mRNA_H-elongata_contig11860.1436.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig11860.1436.1 vs. uniprot
Match: D7G8K0_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8K0_ECTSI) HSP 1 Score: 248 bits (634), Expect = 1.460e-75 Identity = 136/253 (53.75%), Postives = 166/253 (65.61%), Query Frame = 1
Query: 13 MLLDACDCELPNEGRRADVSGRGLVGVVQEDLRFFIRLRSLDAGDNSLQLNSFALMPRLEELRLPCNGIRDV----VLPK-----------RGYTELTRLDLSYNSLSNDALSVLGRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLEGDIVIDVLSKLPALQELNLAFNYFTCVTLTPEAIENAFVSLECLDLGFNYINSENDVAVLVLLAQLQRIVLYGNPLAGPTGEDPLGLRVEHLLDKANR 726
ML+DAC C+LP+EGRRADVSGRGLV VV+ED+ FF+RL+++DAGDNSL +SF +PRLEELRLPCN IRD+ +L + GY +L RLDLSYNSLS ALSVL L +LE D V DVLS+LP L+ELNLAFNYFT + L + E AF LE LDLGFN+I SE+DV V+VL +LQR++LYGNPLAGPTGED LGL VE L+ +++R
Sbjct: 1 MLMDACGCDLPDEGRRADVSGRGLVSVVREDMSFFVRLQAVDAGDNSLPFDSFLDLPRLEELRLPCNSIRDIDGRKILTQLQLGGGDGNSGNGYGQLRRLDLSYNSLSGGALSVLTHLPSLTDLDLTCNGLVDLPVAMARFPVLQKLSLERNQLESDAVFDVLSRLPGLRELNLAFNYFTGINLDLDIAEQAFPLLEALDLGFNFIGSESDVVVVVLFERLQRLILYGNPLAGPTGEDSLGLCVEKLVAESDR 253
BLAST of mRNA_H-elongata_contig11860.1436.1 vs. uniprot
Match: A0A836C9W6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9W6_9STRA) HSP 1 Score: 176 bits (446), Expect = 1.520e-47 Identity = 102/245 (41.63%), Postives = 136/245 (55.51%), Query Frame = 1
Query: 1 LNGFMLLDACDCELPNEGRRADVSGRGLVGVVQEDLRFFIRLRSLDAGDNSLQLNSFALMPRLEELRLPCNGIRDVV---LPKRGYTELTRLDLSYNSLSNDALSVLGRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLEGDIVIDVLSKLPALQELNLAFNYFTCVTLTPEAIENAFVSLECLDLGFNYINSENDVAVLVLLAQLQRIVLYGNPLAGPTGEDPLGLRVEHLLDKANR 726
++GF +L+ +LP+ RR+D+SG VVQ+DL +F +L+ LDAGDNSL L+ FA + +L ELRL CNGI LP Y LTRLDLSYN+LS A++ L +L +LEG V+ L+ LP L+EL+LAFNYF + E LDL FNYI ++ D LVLL +L R++LYGNPL GP+GED G+ +E L D A+R
Sbjct: 157 VDGFAILEGSGVDLPDGARRSDISGGNFTEVVQDDLGYFNKLQELDAGDNSLSLSCFACLQQLHELRLQCNGITAPPAPPLPPASYPALTRLDLSYNALSGAAIAQLAQLPVLKYLDLSCNGLTSLPAELAALPCLECLVLERNQLEGGEVMATLATLPVLRELSLAFNYFAAI--------------EALDLAFNYIGAQADAMPLVLLPKLARVILYGNPLCGPSGEDLSGITIEGLEDAADR 387
BLAST of mRNA_H-elongata_contig11860.1436.1 vs. uniprot
Match: A0A7S3XTX8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XTX8_HETAK) HSP 1 Score: 162 bits (411), Expect = 8.290e-43 Identity = 100/243 (41.15%), Postives = 131/243 (53.91%), Query Frame = 1
Query: 1 LNGFMLLDACDCELPNEGRRADVSGRGLVGVVQEDLRFFIRLRSLDAGDNSLQLNSFALMPRLEELRLPCNGIRDVVLPKRGYTELTRLDLSYNSLSNDALSVLGRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLEGDIVIDVLSKLPALQELNLAFNYFTCVTLTPE-AIENAFVSLECLDLGFNYINSENDVAVLVLLAQLQRIVLYGNPLAGPTGEDPLGLRVEHLLDKANR 726
L+GF LL A + P+E RRAD SG+G V DL +F+RL +LD +N L L F +PRL++LRL NG+ + P+ GY L RLDLSYN++ AL L L + +G+I + VL+++P L+EL LAFN+ T E A E F +L+ LDL FNY+ +E DV L L L R++LYGNPLAGPTGEDP G V L A R
Sbjct: 100 LDGFDLLQAAGVQFPDEARRADASGKGYEEVNTADLGYFVRLATLDVSENHLALEWFCRLPRLKDLRLAYNGLT-ALGPQEGYPALMRLDLSYNAVEPAALGCLAALPRLRALDLTSNGLAELPDALAGFHTLEILTLEHNQFDGEIPL-VLAEIPKLRELYLAFNFID--TAPAECAAEGQFPALDLLDLAFNYVAAERDVLPLAALPVLTRVILYGNPLAGPTGEDPAGACVRRFLHLAER 338
BLAST of mRNA_H-elongata_contig11860.1436.1 vs. uniprot
Match: F0YEQ3_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEQ3_AURAN) HSP 1 Score: 123 bits (309), Expect = 1.090e-28 Identity = 125/256 (48.83%), Postives = 154/256 (60.16%), Query Frame = 1
Query: 1 LNGFMLLDACDCELPNEGRRADVSGRGLVGVVQEDLRFFIRLRSLDAGDNSLQLNSFALMPRLEELRLPCNGIRDVVLPK--RGYTELTRLDLSYNSLSNDALSVLGRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLE--GDIVID-----VLSKLPALQELNLAFNYFT------CVTLTPEAIENA-FVSLECLDLGFNYINSENDVAVLVLLAQLQRIVLYGNPLAGPTGEDPLGLRVEHLLDKA 720
++GF+LL+AC E P+EG RADVSG V + DL +F RL +LD DN L L F +PRL+ELR NG+ P+ + L LDLSYN+L A++ L +XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GD D LS L L+EL+LA N T V + E A FV L L+L +N I++E DV L LL +L+ + LYGNPL GP ED G V + + A
Sbjct: 70 VDGFLLLEACGVEFPDEGHRADVSGYAASSVSETDLEYFPRLATLDCSDNCLPLAPFGKLPRLKELRFAANGLERFDWPQGSSAWQRLQVLDLSYNALGVQAVTNLAGMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGDAQDDCGNVCALSGLTRLRELSLAHNKLTGFPTLDAVAEATKVSETAIFVELVALNLAWNKIHTEGDVMGLTLLPKLEHLALYGNPLLGPAKEDASGGSVRNFAECA 325
BLAST of mRNA_H-elongata_contig11860.1436.1 vs. uniprot
Match: A0A7S4E570_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E570_9STRA) HSP 1 Score: 111 bits (277), Expect = 2.190e-24 Identity = 80/255 (31.37%), Postives = 111/255 (43.53%), Query Frame = 1
Query: 1 LNGFMLLDACDCELPNEGRRADVSGRGLVGVVQEDLRFFIRLRSLDAGDNS-LQLNSFALMPRLEELRLP------CNGIRDVVLPKRGYTELTRLDLSYNSLSNDALSVLGRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLEGDIVIDVLSKLPALQELNLAFNYFTCVTLTPEAIENAF------VSLECLDLGFNYINSENDVAVLVLLAQLQRIVLYGNPLAGPTGEDPLGLRVEHLLDKANR 726
++GF+LLDAC E P+EG RADVSGR V DL +F L +DA DN L L F +PRL++LR C+ + + P+ L LDLSYN+ + D +S L + +L+GD + T+ A + L LDL N+I SE D+ L +L +L+++ LYGNPL G TGEDP G V L+ A +
Sbjct: 123 IDGFLLLDACGVEFPDEGHRADVSGRHATEVSSTDLEYFPNLSWVDASDNPRLPLEDFGSLPRLKDLRFAANSWSVCSSVSEDWFPR-----LLVLDLSYNTATLDGISQLVTMPRLRDLDLTGNGLVELPDVFSDFQSLEKLFLERNRLQGDXXXXXXXXXXXXXXXXXXXXVTSTPTIDAMAEATSLDHTEILAELVALDLAHNHIRSEKDIDDLTVLPKLEQLSLYGNPLLGATGEDPTGETVRTLVQTATQ 372
BLAST of mRNA_H-elongata_contig11860.1436.1 vs. uniprot
Match: A0A225WGB5_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WGB5_9STRA) HSP 1 Score: 108 bits (269), Expect = 6.940e-24 Identity = 75/237 (31.65%), Postives = 105/237 (44.30%), Query Frame = 1
Query: 1 LNGFMLLDACDCELPNEGRRADVSGRGLVGVVQEDLRFFIRLRSLDAGDNSLQLNSFALMPRLEELRLPCNGIRDVVLPKRGYTELTRLDLSYNSLSNDALSVLGRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLEGDIVIDVLSKLPALQELNLAFNYFTCVTLTPEAIEN----AFVSLECLDLGFNYINSENDVAVLVLLAQLQRIVLYGNPLA--GPTGEDPLGL 693
L+GF+ LD C E P+E +A +S + VV EDL FF L LD DN L+ F +P L EL CN + ++ L G+ L L+LS+N L + L L L + G V L+ +P L+ LNL++N T + +E+ F +L L+L N I E DV L L++++LYGNPLA T DP L
Sbjct: 48 LDGFLFLDCCRVEFPDEVVQAVLSDMHITDVVAEDLLFFTNLTRLDMSDNEAPLDPFGCLPALVELDFQCNALEEITL-SNGFQNLEVLNLSFNCLGSKDLEELSNLLRIRELYLGSNRIRSLPPIMDRFSRLETLSLESNNISGQEVFSFLAIMPRLRNLNLSYNKITGFPESALTLEDKRGAGFYNLIYLNLAHNMITDEEDVINTCELRSLRKLILYGNPLAHAAVTSYDPTKL 283
BLAST of mRNA_H-elongata_contig11860.1436.1 vs. uniprot
Match: A0A418F1K1_9STRA (Uncharacterized protein n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418F1K1_9STRA) HSP 1 Score: 108 bits (271), Expect = 1.220e-23 Identity = 72/226 (31.86%), Postives = 104/226 (46.02%), Query Frame = 1
Query: 1 LNGFMLLDACDCELPNEGRRADVSGRGLVGVVQEDLRFFIRLRSLDAGDNSLQLNSFALMPRLEELRLPCNGIRDVVLPKRGYTELTRLDLSYNSLSNDALSVLGRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLEGDIVIDVLSKLPALQELNLAFNYF-----TCVTLTPEAIENAFVSLECLDLGFNYINSENDVAVLVLLAQLQRIVLYGNPLA 663
L+GF+LLD C E P E RADV+G + VV +DL FF L LD DN +P L+EL CN + + G+ L L+LS+N L++ + L +L ++G V +L+ P L+ LNL+ N + + L + FV+L L+L N I+ E D+ LV + LQ++VLYGNPLA
Sbjct: 69 LDGFLLLDTCRVEFPEEATRADVNGLNIRSVVVDDLLFFSNLVFLDMSDNQSPFEPLGALPALKELDFQCNAVHKIT-NLTGFDALEWLNLSFNCLTSPDVEELAKLPKLRELYLSNNAIATLPPIMDRFSRLETLSLERNNMQGTGVFTLLAVAPRLRNLNLSHNKLVEFPESALALHDKQSNCGFVTLAYLNLAHNKISRECDILPLVKMRSLQQLVLYGNPLA 293
BLAST of mRNA_H-elongata_contig11860.1436.1 vs. uniprot
Match: D0MWK4_PHYIT (Uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0MWK4_PHYIT) HSP 1 Score: 107 bits (267), Expect = 1.590e-23 Identity = 79/237 (33.33%), Postives = 104/237 (43.88%), Query Frame = 1
Query: 1 LNGFMLLDACDCELPNEGRRADVSGRGLVGVVQEDLRFFIRLRSLDAGDNSLQLNSFALMPRLEELRLPCNGIRDVVLPKRGYTELTRLDLSYNSLSNDALSVLGRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLEGDIVIDVLSKLPALQELNLAFNYFTCV---TLTPEAIENA-FVSLECLDLGFNYINSENDVAVLVLLAQLQRIVLYGNPLA--GPTGEDPLGL 693
L+GF+LLD C E P+E +A +S + VV EDL FF L LD DN L F +P L EL CN + +V+L G+ L L+LS+N L L L L + G V L+ +P L+ LNL++N T LT E A F +L L+L N I E V L L++++LYGNPLA T DP L
Sbjct: 64 LDGFLLLDWCRVEFPDEVAQAFLSDMHITDVVAEDLLFFTNLTRLDMSDNEAPLEPFGCLPALVELDFQCNALEEVIL-SNGFQSLEVLNLSFNCLGPKDLEELSNLLRIRELYLGSNRIRSLPPIMDRFSRLETLSLESNNISGQEVFSFLAIMPRLRNLNLSYNKITGFPESALTLEEKRGAGFYNLIYLNLAHNMITDEEAVVYTTELRSLRKLILYGNPLAHAAVTSYDPTKL 299
BLAST of mRNA_H-elongata_contig11860.1436.1 vs. uniprot
Match: A0A1V9ZGP9_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZGP9_9STRA) HSP 1 Score: 108 bits (270), Expect = 1.590e-23 Identity = 72/225 (32.00%), Postives = 102/225 (45.33%), Query Frame = 1
Query: 1 LNGFMLLDACDCELPNEGRRADVSGRGLVGVVQEDLRFFIRLRSLDAGDNSLQLNSFALMPRLEELRLPCNGIRDVVLPKRGYTELTRLDLSYNSLSNDALSVLGRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLEGDIVIDVLSKLPALQELNLAFNYFTCVTLTPEAIEN----AFVSLECLDLGFNYINSENDVAVLVLLAQLQRIVLYGNPLA 663
L+GF+LLD C E P E RADV+G + VV +DL++F L LD DN L +P L+EL CN + V G+T L L+LS+N L + L +L ++G V +L+ +P L+ LNL+ N T + A+ + + L L+L N I E D+ L L L ++VLYGNPLA
Sbjct: 46 LDGFLLLDTCRVEFPEEASRADVNGHNITAVVADDLQYFTNLLFLDMSDNQAPLEPLGALPALKELDFQCNALHKVS-NLVGFTSLEWLNLSFNCLVGKDVEELSKLPKLRELYLASNWITSVPPIMDRFARLETLSLERNNIQGTGVFLLLAVMPRLKNLNLSHNKITEFPINSLALNDKQGAGYYHLAYLNLAHNKIAREEDIFSLTQLRVLSQLVLYGNPLA 269
BLAST of mRNA_H-elongata_contig11860.1436.1 vs. uniprot
Match: A0A6A5AXA2_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AXA2_9STRA) HSP 1 Score: 108 bits (271), Expect = 1.930e-23 Identity = 72/226 (31.86%), Postives = 104/226 (46.02%), Query Frame = 1
Query: 1 LNGFMLLDACDCELPNEGRRADVSGRGLVGVVQEDLRFFIRLRSLDAGDNSLQLNSFALMPRLEELRLPCNGIRDVVLPKRGYTELTRLDLSYNSLSNDALSVLGRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLEGDIVIDVLSKLPALQELNLAFNYF-----TCVTLTPEAIENAFVSLECLDLGFNYINSENDVAVLVLLAQLQRIVLYGNPLA 663
L+GF+LLD C E P E RADV+G + VV +DL FF L LD DN +P L+EL CN + + G+ L L+LS+N L++ + L +L ++G V +L+ P L+ LNL+ N + + L + FV+L L+L N I+ E D+ LV + LQ++VLYGNPLA
Sbjct: 532 LDGFLLLDTCRVEFPEEATRADVNGLNIRSVVVDDLLFFSNLVFLDMSDNQSPFEPLGALPALKELDFQCNAVHKIT-NLTGFDALEWLNLSFNCLTSPDVEELAKLPKLRELYLSNNAIATLPPIMDRFSRLETLSLERNNMQGTGVFTLLAVAPRLRNLNLSHNKLGEFPESALALHDKQSNCGFVTLAYLNLAHNKISRECDILPLVKMRSLQQLVLYGNPLA 756 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11860.1436.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig11860.1436.1 >prot_H-elongata_contig11860.1436.1 ID=prot_H-elongata_contig11860.1436.1|Name=mRNA_H-elongata_contig11860.1436.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=238bp MLLDACDCELPNEGRRADVSGRGLVGVVQEDLRFFIRLRSLDAGDNSLQLback to top mRNA from alignment at H-elongata_contig11860:7630..8515+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig11860.1436.1 ID=mRNA_H-elongata_contig11860.1436.1|Name=mRNA_H-elongata_contig11860.1436.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=886bp|location=Sequence derived from alignment at H-elongata_contig11860:7630..8515+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig11860:7630..8515+ >mRNA_H-elongata_contig11860.1436.1 ID=mRNA_H-elongata_contig11860.1436.1|Name=mRNA_H-elongata_contig11860.1436.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1428bp|location=Sequence derived from alignment at H-elongata_contig11860:7630..8515+ (Himanthalia elongata Himel1 dioecious)back to top |