mRNA_H-elongata_contig11860.1436.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11860.1436.1
Unique NamemRNA_H-elongata_contig11860.1436.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig11860.1436.1 vs. uniprot
Match: D7G8K0_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8K0_ECTSI)

HSP 1 Score: 248 bits (634), Expect = 1.460e-75
Identity = 136/253 (53.75%), Postives = 166/253 (65.61%), Query Frame = 1
Query:   13 MLLDACDCELPNEGRRADVSGRGLVGVVQEDLRFFIRLRSLDAGDNSLQLNSFALMPRLEELRLPCNGIRDV----VLPK-----------RGYTELTRLDLSYNSLSNDALSVLGRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLEGDIVIDVLSKLPALQELNLAFNYFTCVTLTPEAIENAFVSLECLDLGFNYINSENDVAVLVLLAQLQRIVLYGNPLAGPTGEDPLGLRVEHLLDKANR 726
            ML+DAC C+LP+EGRRADVSGRGLV VV+ED+ FF+RL+++DAGDNSL  +SF  +PRLEELRLPCN IRD+    +L +            GY +L RLDLSYNSLS  ALSVL  L                                  +LE D V DVLS+LP L+ELNLAFNYFT + L  +  E AF  LE LDLGFN+I SE+DV V+VL  +LQR++LYGNPLAGPTGED LGL VE L+ +++R
Sbjct:    1 MLMDACGCDLPDEGRRADVSGRGLVSVVREDMSFFVRLQAVDAGDNSLPFDSFLDLPRLEELRLPCNSIRDIDGRKILTQLQLGGGDGNSGNGYGQLRRLDLSYNSLSGGALSVLTHLPSLTDLDLTCNGLVDLPVAMARFPVLQKLSLERNQLESDAVFDVLSRLPGLRELNLAFNYFTGINLDLDIAEQAFPLLEALDLGFNFIGSESDVVVVVLFERLQRLILYGNPLAGPTGEDSLGLCVEKLVAESDR 253          
BLAST of mRNA_H-elongata_contig11860.1436.1 vs. uniprot
Match: A0A836C9W6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9W6_9STRA)

HSP 1 Score: 176 bits (446), Expect = 1.520e-47
Identity = 102/245 (41.63%), Postives = 136/245 (55.51%), Query Frame = 1
Query:    1 LNGFMLLDACDCELPNEGRRADVSGRGLVGVVQEDLRFFIRLRSLDAGDNSLQLNSFALMPRLEELRLPCNGIRDVV---LPKRGYTELTRLDLSYNSLSNDALSVLGRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLEGDIVIDVLSKLPALQELNLAFNYFTCVTLTPEAIENAFVSLECLDLGFNYINSENDVAVLVLLAQLQRIVLYGNPLAGPTGEDPLGLRVEHLLDKANR 726
            ++GF +L+    +LP+  RR+D+SG     VVQ+DL +F +L+ LDAGDNSL L+ FA + +L ELRL CNGI       LP   Y  LTRLDLSYN+LS  A++ L +L                                  +LEG  V+  L+ LP L+EL+LAFNYF  +              E LDL FNYI ++ D   LVLL +L R++LYGNPL GP+GED  G+ +E L D A+R
Sbjct:  157 VDGFAILEGSGVDLPDGARRSDISGGNFTEVVQDDLGYFNKLQELDAGDNSLSLSCFACLQQLHELRLQCNGITAPPAPPLPPASYPALTRLDLSYNALSGAAIAQLAQLPVLKYLDLSCNGLTSLPAELAALPCLECLVLERNQLEGGEVMATLATLPVLRELSLAFNYFAAI--------------EALDLAFNYIGAQADAMPLVLLPKLARVILYGNPLCGPSGEDLSGITIEGLEDAADR 387          
BLAST of mRNA_H-elongata_contig11860.1436.1 vs. uniprot
Match: A0A7S3XTX8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XTX8_HETAK)

HSP 1 Score: 162 bits (411), Expect = 8.290e-43
Identity = 100/243 (41.15%), Postives = 131/243 (53.91%), Query Frame = 1
Query:    1 LNGFMLLDACDCELPNEGRRADVSGRGLVGVVQEDLRFFIRLRSLDAGDNSLQLNSFALMPRLEELRLPCNGIRDVVLPKRGYTELTRLDLSYNSLSNDALSVLGRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLEGDIVIDVLSKLPALQELNLAFNYFTCVTLTPE-AIENAFVSLECLDLGFNYINSENDVAVLVLLAQLQRIVLYGNPLAGPTGEDPLGLRVEHLLDKANR 726
            L+GF LL A   + P+E RRAD SG+G   V   DL +F+RL +LD  +N L L  F  +PRL++LRL  NG+   + P+ GY  L RLDLSYN++   AL  L  L                                  + +G+I + VL+++P L+EL LAFN+    T   E A E  F +L+ LDL FNY+ +E DV  L  L  L R++LYGNPLAGPTGEDP G  V   L  A R
Sbjct:  100 LDGFDLLQAAGVQFPDEARRADASGKGYEEVNTADLGYFVRLATLDVSENHLALEWFCRLPRLKDLRLAYNGLT-ALGPQEGYPALMRLDLSYNAVEPAALGCLAALPRLRALDLTSNGLAELPDALAGFHTLEILTLEHNQFDGEIPL-VLAEIPKLRELYLAFNFID--TAPAECAAEGQFPALDLLDLAFNYVAAERDVLPLAALPVLTRVILYGNPLAGPTGEDPAGACVRRFLHLAER 338          
BLAST of mRNA_H-elongata_contig11860.1436.1 vs. uniprot
Match: F0YEQ3_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEQ3_AURAN)

HSP 1 Score: 123 bits (309), Expect = 1.090e-28
Identity = 125/256 (48.83%), Postives = 154/256 (60.16%), Query Frame = 1
Query:    1 LNGFMLLDACDCELPNEGRRADVSGRGLVGVVQEDLRFFIRLRSLDAGDNSLQLNSFALMPRLEELRLPCNGIRDVVLPK--RGYTELTRLDLSYNSLSNDALSVLGRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLE--GDIVID-----VLSKLPALQELNLAFNYFT------CVTLTPEAIENA-FVSLECLDLGFNYINSENDVAVLVLLAQLQRIVLYGNPLAGPTGEDPLGLRVEHLLDKA 720
            ++GF+LL+AC  E P+EG RADVSG     V + DL +F RL +LD  DN L L  F  +PRL+ELR   NG+     P+    +  L  LDLSYN+L   A++ L  +XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     GD   D      LS L  L+EL+LA N  T       V    +  E A FV L  L+L +N I++E DV  L LL +L+ + LYGNPL GP  ED  G  V +  + A
Sbjct:   70 VDGFLLLEACGVEFPDEGHRADVSGYAASSVSETDLEYFPRLATLDCSDNCLPLAPFGKLPRLKELRFAANGLERFDWPQGSSAWQRLQVLDLSYNALGVQAVTNLAGMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGDAQDDCGNVCALSGLTRLRELSLAHNKLTGFPTLDAVAEATKVSETAIFVELVALNLAWNKIHTEGDVMGLTLLPKLEHLALYGNPLLGPAKEDASGGSVRNFAECA 325          
BLAST of mRNA_H-elongata_contig11860.1436.1 vs. uniprot
Match: A0A7S4E570_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E570_9STRA)

HSP 1 Score: 111 bits (277), Expect = 2.190e-24
Identity = 80/255 (31.37%), Postives = 111/255 (43.53%), Query Frame = 1
Query:    1 LNGFMLLDACDCELPNEGRRADVSGRGLVGVVQEDLRFFIRLRSLDAGDNS-LQLNSFALMPRLEELRLP------CNGIRDVVLPKRGYTELTRLDLSYNSLSNDALSVLGRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLEGDIVIDVLSKLPALQELNLAFNYFTCVTLTPEAIENAF------VSLECLDLGFNYINSENDVAVLVLLAQLQRIVLYGNPLAGPTGEDPLGLRVEHLLDKANR 726
            ++GF+LLDAC  E P+EG RADVSGR    V   DL +F  L  +DA DN  L L  F  +PRL++LR        C+ + +   P+     L  LDLSYN+ + D +S L  +                                  +L+GD                      +  T+   A   +         L  LDL  N+I SE D+  L +L +L+++ LYGNPL G TGEDP G  V  L+  A +
Sbjct:  123 IDGFLLLDACGVEFPDEGHRADVSGRHATEVSSTDLEYFPNLSWVDASDNPRLPLEDFGSLPRLKDLRFAANSWSVCSSVSEDWFPR-----LLVLDLSYNTATLDGISQLVTMPRLRDLDLTGNGLVELPDVFSDFQSLEKLFLERNRLQGDXXXXXXXXXXXXXXXXXXXXVTSTPTIDAMAEATSLDHTEILAELVALDLAHNHIRSEKDIDDLTVLPKLEQLSLYGNPLLGATGEDPTGETVRTLVQTATQ 372          
BLAST of mRNA_H-elongata_contig11860.1436.1 vs. uniprot
Match: A0A225WGB5_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WGB5_9STRA)

HSP 1 Score: 108 bits (269), Expect = 6.940e-24
Identity = 75/237 (31.65%), Postives = 105/237 (44.30%), Query Frame = 1
Query:    1 LNGFMLLDACDCELPNEGRRADVSGRGLVGVVQEDLRFFIRLRSLDAGDNSLQLNSFALMPRLEELRLPCNGIRDVVLPKRGYTELTRLDLSYNSLSNDALSVLGRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLEGDIVIDVLSKLPALQELNLAFNYFTCVTLTPEAIEN----AFVSLECLDLGFNYINSENDVAVLVLLAQLQRIVLYGNPLA--GPTGEDPLGL 693
            L+GF+ LD C  E P+E  +A +S   +  VV EDL FF  L  LD  DN   L+ F  +P L EL   CN + ++ L   G+  L  L+LS+N L +  L  L  L                                   + G  V   L+ +P L+ LNL++N  T    +   +E+     F +L  L+L  N I  E DV     L  L++++LYGNPLA    T  DP  L
Sbjct:   48 LDGFLFLDCCRVEFPDEVVQAVLSDMHITDVVAEDLLFFTNLTRLDMSDNEAPLDPFGCLPALVELDFQCNALEEITL-SNGFQNLEVLNLSFNCLGSKDLEELSNLLRIRELYLGSNRIRSLPPIMDRFSRLETLSLESNNISGQEVFSFLAIMPRLRNLNLSYNKITGFPESALTLEDKRGAGFYNLIYLNLAHNMITDEEDVINTCELRSLRKLILYGNPLAHAAVTSYDPTKL 283          
BLAST of mRNA_H-elongata_contig11860.1436.1 vs. uniprot
Match: A0A418F1K1_9STRA (Uncharacterized protein n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418F1K1_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.220e-23
Identity = 72/226 (31.86%), Postives = 104/226 (46.02%), Query Frame = 1
Query:    1 LNGFMLLDACDCELPNEGRRADVSGRGLVGVVQEDLRFFIRLRSLDAGDNSLQLNSFALMPRLEELRLPCNGIRDVVLPKRGYTELTRLDLSYNSLSNDALSVLGRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLEGDIVIDVLSKLPALQELNLAFNYF-----TCVTLTPEAIENAFVSLECLDLGFNYINSENDVAVLVLLAQLQRIVLYGNPLA 663
            L+GF+LLD C  E P E  RADV+G  +  VV +DL FF  L  LD  DN         +P L+EL   CN +  +     G+  L  L+LS+N L++  +  L +L                                   ++G  V  +L+  P L+ LNL+ N       + + L  +     FV+L  L+L  N I+ E D+  LV +  LQ++VLYGNPLA
Sbjct:   69 LDGFLLLDTCRVEFPEEATRADVNGLNIRSVVVDDLLFFSNLVFLDMSDNQSPFEPLGALPALKELDFQCNAVHKIT-NLTGFDALEWLNLSFNCLTSPDVEELAKLPKLRELYLSNNAIATLPPIMDRFSRLETLSLERNNMQGTGVFTLLAVAPRLRNLNLSHNKLVEFPESALALHDKQSNCGFVTLAYLNLAHNKISRECDILPLVKMRSLQQLVLYGNPLA 293          
BLAST of mRNA_H-elongata_contig11860.1436.1 vs. uniprot
Match: D0MWK4_PHYIT (Uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0MWK4_PHYIT)

HSP 1 Score: 107 bits (267), Expect = 1.590e-23
Identity = 79/237 (33.33%), Postives = 104/237 (43.88%), Query Frame = 1
Query:    1 LNGFMLLDACDCELPNEGRRADVSGRGLVGVVQEDLRFFIRLRSLDAGDNSLQLNSFALMPRLEELRLPCNGIRDVVLPKRGYTELTRLDLSYNSLSNDALSVLGRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLEGDIVIDVLSKLPALQELNLAFNYFTCV---TLTPEAIENA-FVSLECLDLGFNYINSENDVAVLVLLAQLQRIVLYGNPLA--GPTGEDPLGL 693
            L+GF+LLD C  E P+E  +A +S   +  VV EDL FF  L  LD  DN   L  F  +P L EL   CN + +V+L   G+  L  L+LS+N L    L  L  L                                   + G  V   L+ +P L+ LNL++N  T      LT E    A F +L  L+L  N I  E  V     L  L++++LYGNPLA    T  DP  L
Sbjct:   64 LDGFLLLDWCRVEFPDEVAQAFLSDMHITDVVAEDLLFFTNLTRLDMSDNEAPLEPFGCLPALVELDFQCNALEEVIL-SNGFQSLEVLNLSFNCLGPKDLEELSNLLRIRELYLGSNRIRSLPPIMDRFSRLETLSLESNNISGQEVFSFLAIMPRLRNLNLSYNKITGFPESALTLEEKRGAGFYNLIYLNLAHNMITDEEAVVYTTELRSLRKLILYGNPLAHAAVTSYDPTKL 299          
BLAST of mRNA_H-elongata_contig11860.1436.1 vs. uniprot
Match: A0A1V9ZGP9_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZGP9_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.590e-23
Identity = 72/225 (32.00%), Postives = 102/225 (45.33%), Query Frame = 1
Query:    1 LNGFMLLDACDCELPNEGRRADVSGRGLVGVVQEDLRFFIRLRSLDAGDNSLQLNSFALMPRLEELRLPCNGIRDVVLPKRGYTELTRLDLSYNSLSNDALSVLGRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLEGDIVIDVLSKLPALQELNLAFNYFTCVTLTPEAIEN----AFVSLECLDLGFNYINSENDVAVLVLLAQLQRIVLYGNPLA 663
            L+GF+LLD C  E P E  RADV+G  +  VV +DL++F  L  LD  DN   L     +P L+EL   CN +  V     G+T L  L+LS+N L    +  L +L                                   ++G  V  +L+ +P L+ LNL+ N  T   +   A+ +     +  L  L+L  N I  E D+  L  L  L ++VLYGNPLA
Sbjct:   46 LDGFLLLDTCRVEFPEEASRADVNGHNITAVVADDLQYFTNLLFLDMSDNQAPLEPLGALPALKELDFQCNALHKVS-NLVGFTSLEWLNLSFNCLVGKDVEELSKLPKLRELYLASNWITSVPPIMDRFARLETLSLERNNIQGTGVFLLLAVMPRLKNLNLSHNKITEFPINSLALNDKQGAGYYHLAYLNLAHNKIAREEDIFSLTQLRVLSQLVLYGNPLA 269          
BLAST of mRNA_H-elongata_contig11860.1436.1 vs. uniprot
Match: A0A6A5AXA2_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AXA2_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.930e-23
Identity = 72/226 (31.86%), Postives = 104/226 (46.02%), Query Frame = 1
Query:    1 LNGFMLLDACDCELPNEGRRADVSGRGLVGVVQEDLRFFIRLRSLDAGDNSLQLNSFALMPRLEELRLPCNGIRDVVLPKRGYTELTRLDLSYNSLSNDALSVLGRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLEGDIVIDVLSKLPALQELNLAFNYF-----TCVTLTPEAIENAFVSLECLDLGFNYINSENDVAVLVLLAQLQRIVLYGNPLA 663
            L+GF+LLD C  E P E  RADV+G  +  VV +DL FF  L  LD  DN         +P L+EL   CN +  +     G+  L  L+LS+N L++  +  L +L                                   ++G  V  +L+  P L+ LNL+ N       + + L  +     FV+L  L+L  N I+ E D+  LV +  LQ++VLYGNPLA
Sbjct:  532 LDGFLLLDTCRVEFPEEATRADVNGLNIRSVVVDDLLFFSNLVFLDMSDNQSPFEPLGALPALKELDFQCNAVHKIT-NLTGFDALEWLNLSFNCLTSPDVEELAKLPKLRELYLSNNAIATLPPIMDRFSRLETLSLERNNMQGTGVFTLLAVAPRLRNLNLSHNKLGEFPESALALHDKQSNCGFVTLAYLNLAHNKISRECDILPLVKMRSLQQLVLYGNPLA 756          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11860.1436.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8K0_ECTSI1.460e-7553.75Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
A0A836C9W6_9STRA1.520e-4741.63Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3XTX8_HETAK8.290e-4341.15Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
F0YEQ3_AURAN1.090e-2848.83Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S4E570_9STRA2.190e-2431.37Hypothetical protein (Fragment) n=2 Tax=Pelagomona... [more]
A0A225WGB5_9STRA6.940e-2431.65Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A418F1K1_9STRA1.220e-2331.86Uncharacterized protein n=6 Tax=Aphanomyces astaci... [more]
D0MWK4_PHYIT1.590e-2333.33Uncharacterized protein n=1 Tax=Phytophthora infes... [more]
A0A1V9ZGP9_9STRA1.590e-2332.00Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A6A5AXA2_9STRA1.930e-2331.86Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11860contigH-elongata_contig11860:7630..8515 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score246.5
Seed ortholog evalue1.2e-62
Seed eggNOG ortholog2880.D7G8K0
KEGG koko:K08460
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04030
Hectar predicted targeting categoryother localisation
Exons2
Model size726
Cds size714
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11860.1436.1prot_H-elongata_contig11860.1436.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11860 7642..8515 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929693.3740377-UTR-H-elongata_contig11860:7629..76411622929693.3740377-UTR-H-elongata_contig11860:7629..7641Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11860 7630..7641 +
1691679121.30093-UTR-H-elongata_contig11860:7629..76411691679121.30093-UTR-H-elongata_contig11860:7629..7641Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11860 7630..7641 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929693.3893847-CDS-H-elongata_contig11860:7641..80791622929693.3893847-CDS-H-elongata_contig11860:7641..8079Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11860 7642..8079 +
1691679121.3108745-CDS-H-elongata_contig11860:7641..80791691679121.3108745-CDS-H-elongata_contig11860:7641..8079Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11860 7642..8079 +
1622929693.4036126-CDS-H-elongata_contig11860:8239..85151622929693.4036126-CDS-H-elongata_contig11860:8239..8515Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11860 8240..8515 +
1691679121.3225684-CDS-H-elongata_contig11860:8239..85151691679121.3225684-CDS-H-elongata_contig11860:8239..8515Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11860 8240..8515 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11860.1436.1

>prot_H-elongata_contig11860.1436.1 ID=prot_H-elongata_contig11860.1436.1|Name=mRNA_H-elongata_contig11860.1436.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=238bp
MLLDACDCELPNEGRRADVSGRGLVGVVQEDLRFFIRLRSLDAGDNSLQL
NSFALMPRLEELRLPCNGIRDVVLPKRGYTELTRLDLSYNSLSNDALSVL
GRLPNLTDLDLTCNGLVKLPEAMGVFFRLQKLSLERNKLEGDIVIDVLSK
LPALQELNLAFNYFTCVTLTPEAIENAFVSLECLDLGFNYINSENDVAVL
VLLAQLQRIVLYGNPLAGPTGEDPLGLRVEHLLDKANR
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mRNA from alignment at H-elongata_contig11860:7630..8515+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11860.1436.1 ID=mRNA_H-elongata_contig11860.1436.1|Name=mRNA_H-elongata_contig11860.1436.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=886bp|location=Sequence derived from alignment at H-elongata_contig11860:7630..8515+ (Himanthalia elongata Himel1 dioecious)
CTGAACGGGTTCATGTTGTTGGACGCATGCGACTGCGAGCTCCCCAATGA AGGAAGAAGGGCAGATGTTAGTGGTAGGGGCTTGGTAGGGGTTGTTCAAG AGGATCTTCGCTTCTTTATCCGACTGCGGAGTCTCGATGCCGGTGACAAT AGTCTTCAGCTCAACAGCTTTGCGTTGATGCCGAGGCTGGAGGAACTCCG TCTTCCGTGCAATGGTATCCGGGACGTAGTGCTACCGAAAAGAGGCTACA CCGAGCTCACTCGTCTCGACCTTTCATACAACAGTCTTTCAAATGACGCA CTGTCCGTACTTGGCCGGCTTCCGAATTTAACCGACCTTGACCTTACGTG TAACGGTCTCGTGAAGCTGCCGGAGGCGATGGGAGTTTTTTTTCGTCTCC AGAAGCTCTCTCTGGAACGCAACAAGCTGGAGGGGGACATCGTAATCGAC GTGAGAAACACATTGAACTTATTATTAGCTACATCATTTATTCCAGCCGA AGCTCGAACATCGTGGTAGACGAAGGGTAGCAAAAGTAATAAATTCCTTA AGGGTCCATGCGACTGCACACCCTCCTTGGCCAAGCCTCCCTTCGAACTG ATGGTCTCAGGTTCTTTCCAAGCTTCCGGCTCTTCAAGAGCTCAACTTGG CATTTAACTACTTCACGTGTGTCACTCTGACACCAGAGGCGATCGAGAAC GCATTTGTCTCACTTGAGTGCCTAGACCTGGGCTTCAATTACATCAACAG TGAGAACGACGTGGCGGTCCTGGTGCTACTCGCACAACTACAGCGGATCG TACTGTACGGGAATCCGCTCGCAGGTCCTACCGGCGAGGATCCTCTCGGT TTGCGCGTCGAACATCTTCTCGACAAGGCAAACAGG
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Coding sequence (CDS) from alignment at H-elongata_contig11860:7630..8515+

>mRNA_H-elongata_contig11860.1436.1 ID=mRNA_H-elongata_contig11860.1436.1|Name=mRNA_H-elongata_contig11860.1436.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1428bp|location=Sequence derived from alignment at H-elongata_contig11860:7630..8515+ (Himanthalia elongata Himel1 dioecious)
ATGTTGTTGGACGCATGCGACTGCGAGCTCCCCAATGAAGGAAGAAGGGC
AGATGTTAGTGGTAGGGGCTTGGTAGGGGTTGTTCAAGAGGATCTTCGCT
TCTTTATCCGACTGCGGAGTCTCGATGCCGGTGACAATAGTCTTCAGCTC
AACAGCTTTGCGTTGATGCCGAGGCTGGAGGAACTCCGTCTTCCGTGCAA
TGGTATCCGGGACGTAGTGCTACCGAAAAGAGGCTACACCGAGCTCACTC
GTCTCGACCTTTCATACAACAGTCTTTCAAATGACGCACTGTCCGTACTT
GGCCGGCTTCCGAATTTAACCGACCTTGACCTTACGTGTAACGGTCTCGT
GAAGCTGCCGGAGGCGATGGGAGTTTTTTTTCGTCTCCAGAAGCTCTCTC
TGGAACGCAACAAGCTGGAGGGGGACATCGTAATCGACATGTTGTTGGAC
GCATGCGACTGCGAGCTCCCCAATGAAGGAAGAAGGGCAGATGTTAGTGG
TAGGGGCTTGGTAGGGGTTGTTCAAGAGGATCTTCGCTTCTTTATCCGAC
TGCGGAGTCTCGATGCCGGTGACAATAGTCTTCAGCTCAACAGCTTTGCG
TTGATGCCGAGGCTGGAGGAACTCCGTCTTCCGTGCAATGGTATCCGGGA
CGTAGTGCTACCGAAAAGAGGCTACACCGAGCTCACTCGTCTCGACCTTT
CATACAACAGTCTTTCAAATGACGCACTGTCCGTACTTGGCCGGCTTCCG
AATTTAACCGACCTTGACCTTACGTGTAACGGTCTCGTGAAGCTGCCGGA
GGCGATGGGAGTTTTTTTTCGTCTCCAGAAGCTCTCTCTGGAACGCAACA
AGCTGGAGGGGGACATCGTAATCGACGTTCTTTCCAAGCTTCCGGCTCTT
CAAGAGCTCAACTTGGCATTTAACTACTTCACGTGTGTCACTCTGACACC
AGAGGCGATCGAGAACGCATTTGTCTCACTTGAGTGCCTAGACCTGGGCT
TCAATTACATCAACAGTGAGAACGACGTGGCGGTCCTGGTGCTACTCGCA
CAACTACAGCGGATCGTACTGTACGGGAATCCGCTCGCAGGTCCTACCGG
CGAGGATCCTCTCGGTTTGCGCGTCGAACATCTTCTCGACAAGGCAAACA
GGGTTCTTTCCAAGCTTCCGGCTCTTCAAGAGCTCAACTTGGCATTTAAC
TACTTCACGTGTGTCACTCTGACACCAGAGGCGATCGAGAACGCATTTGT
CTCACTTGAGTGCCTAGACCTGGGCTTCAATTACATCAACAGTGAGAACG
ACGTGGCGGTCCTGGTGCTACTCGCACAACTACAGCGGATCGTACTGTAC
GGGAATCCGCTCGCAGGTCCTACCGGCGAGGATCCTCTCGGTTTGCGCGT
CGAACATCTTCTCGACAAGGCAAACAGG
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