mRNA_H-elongata_contig65944.14179.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig65944.14179.1
Unique NamemRNA_H-elongata_contig65944.14179.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig65944.14179.1 vs. uniprot
Match: D7FLK3_ECTSI (AAA ATPase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLK3_ECTSI)

HSP 1 Score: 322 bits (825), Expect = 2.320e-99
Identity = 185/259 (71.43%), Postives = 194/259 (74.90%), Query Frame = 1
Query:    1 PPPGKTLLAKAVATECGLPFFSVKGPELLDMYVGESERNVREVFAQARLAAPCVLFFDELDSLAPARGRGGDSGGVMDRVVAQLLAELDGAASAGY------------------------------KSGDPEDGRVGAISDGEASG--TVFVIGATNRPDLLDPSLMRPGRFDRLLYLGVSGDRETQIKVLRAITRKFRFENDTDGNSNGGVDLAEMVRENIPSHFTGADLSAVASNALQLALRRRVAEIEAQVRQQHA 681
            P  GKTLLAKAVATECGLPFFSVKGPELLDMYVGESERNVREVFAQARLAAPCVLFFDELDSLAPARGRGGDSGGVMDRVVAQLLAELDGAAS                                 + G  E          +  G  TVFVIGATNRPDLLDPSLMRPGRFDRLLYLGVSGDRETQ KVLRAITRKF FE +   +S  GVDLAE+VR+ IP  FTGADLSAVASNALQLALRRRVAEIEA+V + +A
Sbjct:  846 PGTGKTLLAKAVATECGLPFFSVKGPELLDMYVGESERNVREVFAQARLAAPCVLFFDELDSLAPARGRGGDSGGVMDRVVAQLLAELDGAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXVHRHQRHGQDESYXXXXXXXXDTVGEETVFVIGATNRPDLLDPSLMRPGRFDRLLYLGVSGDRETQTKVLRAITRKFGFEEE---DSEHGVDLAEIVRDRIPPQFTGADLSAVASNALQLALRRRVAEIEAEVAETNA 1101          
BLAST of mRNA_H-elongata_contig65944.14179.1 vs. uniprot
Match: A0A836CKR6_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKR6_9STRA)

HSP 1 Score: 281 bits (720), Expect = 8.600e-86
Identity = 158/223 (70.85%), Postives = 171/223 (76.68%), Query Frame = 1
Query:    1 PPPGKTLLAKAVATECGLPFFSVKGPELLDMYVGESERNVREVFAQARLAAPCVLFFDELDSLAPARGRGGDSGGVMDRVVAQLLAELDGAASAGYKSGDPEDGRVGAISDGEASGTVFVIGATNRPDLLDPSLMRPGRFDRLLYLGVSGDRETQIKVLRAITRKFRFENDTDGNSNGGVDLAEMVRENIPSHFTGADLSAVASNALQLALRRRVAEIEAQVR 669
            P  GKTLLAKAVATECGL FFSVKGPELLDMYVGESERNVREVF QAR AAPCVLFFDELDSLAP RGRG DSGGVMDRVV+QLL+ELDG               V A +DG A   VFVIGATNRPDLLDPSL+RPGRFDRLLYLG  GD +TQ+KVL A TRKF FE+        GV LAE+ R  IP+ FTGAD+SAVAS AL  AL+RR+AE+EA  R
Sbjct:  656 PGTGKTLLAKAVATECGLAFFSVKGPELLDMYVGESERNVREVFRQARSAAPCVLFFDELDSLAPQRGRGADSGGVMDRVVSQLLSELDG---------------VSAGADGRA---VFVIGATNRPDLLDPSLLRPGRFDRLLYLGTGGDTDTQLKVLSAATRKFTFED--------GVSLAEVARA-IPATFTGADMSAVASAALMAALKRRIAEVEAAAR 851          
BLAST of mRNA_H-elongata_contig65944.14179.1 vs. uniprot
Match: W7TWL5_9STRA (Aaa atpase domain-containing protein (Fragment) n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TWL5_9STRA)

HSP 1 Score: 255 bits (651), Expect = 1.250e-80
Identity = 147/219 (67.12%), Postives = 165/219 (75.34%), Query Frame = 1
Query:    1 PPPGKTLLAKAVATECGLPFFSVKGPELLDMYVGESERNVREVFAQARLAAPCVLFFDELDSLAPARGRGGDSGGVMDRVVAQLLAELDGAASAGYKSGDPEDGRVGAISDGEASGTVFVIGATNRPDLLDPSLMRPGRFDRLLYLGVSGDRETQIKVLRAITRKFRFENDTDGNSNGGVDLAEMVRENIPSHFTGADLSAVASNALQLALRRRVAEIE 657
            P  GKTLLAKAVATECGL F SVKGPELLDMYVGESERNVR+ FA+AR AAP VLFFDELDSLAP RGRG DSGGVMDRVVAQLL ELD A S+G + G  E GR G     +    VFVIGATNRPDLLD SL+RPGRFDRLLYLG + D  ++  +L+A TRKF F  D        VDL+++V   +P +FTGAD SAVA+ AL  ALRRRVAE+E
Sbjct:   55 PGTGKTLLAKAVATECGLAFLSVKGPELLDMYVGESERNVRQAFARARAAAPAVLFFDELDSLAPQRGRGSDSGGVMDRVVAQLLVELD-AVSSGERGG--EGGREGETGRQD----VFVIGATNRPDLLDSSLLRPGRFDRLLYLGNTTDAGSRRAILQAATRKFPFGED--------VDLSDVVSR-LPPNFTGADFSAVAAQALMRALRRRVAELE 257          
BLAST of mRNA_H-elongata_contig65944.14179.1 vs. uniprot
Match: A0A6H5JDF2_9PHAE (AAA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDF2_9PHAE)

HSP 1 Score: 258 bits (658), Expect = 2.880e-76
Identity = 144/206 (69.90%), Postives = 147/206 (71.36%), Query Frame = 1
Query:    1 PPPGKTLLAKAVATECGLPFFSVKGPELLDMYVGESERNVREVFAQARLAAPCVLFFDELDSLAPARGRGGDSGGVMDRVVAQLLAELDGAASAGYKSGDPEDGRV----------------------------------GAISDGEASGTVFVIGATNRPDLLDPSLMRPGRFDRLLYLGVSGDRETQIKVLRAITRKFRFENDT 516
            P  GKTLLAKAVATECGLPFFSVKGPELLDMYVGESERNVREVFAQARLAAPCVLFFDELDSLAPARGRGGDSGGVMDRVVAQLLAELDGAAS                                               G+  D     TVFVIGATNRPDLLDPSLMRPGRFDRLLYLGVSGD+ETQ KVLRAITRKF FE D+
Sbjct:  834 PGTGKTLLAKAVATECGLPFFSVKGPELLDMYVGESERNVREVFAQARLAAPCVLFFDELDSLAPARGRGGDSGGVMDRVVAQLLAELDGAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYXXXXGSGGDTVGGDTVFVIGATNRPDLLDPSLMRPGRFDRLLYLGVSGDQETQTKVLRAITRKFGFEEDS 1039          
BLAST of mRNA_H-elongata_contig65944.14179.1 vs. uniprot
Match: A0A4D9D6M2_9STRA (AAA domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D6M2_9STRA)

HSP 1 Score: 252 bits (643), Expect = 2.300e-75
Identity = 143/219 (65.30%), Postives = 159/219 (72.60%), Query Frame = 1
Query:    1 PPPGKTLLAKAVATECGLPFFSVKGPELLDMYVGESERNVREVFAQARLAAPCVLFFDELDSLAPARGRGGDSGGVMDRVVAQLLAELDGAASAGYKSGDPEDGRVGAISDGEASGTVFVIGATNRPDLLDPSLMRPGRFDRLLYLGVSGDRETQIKVLRAITRKFRFENDTDGNSNGGVDLAEMVRENIPSHFTGADLSAVASNALQLALRRRVAEIE 657
            P  GKTLLAKAVATECGL F SVKGPELLDMYVGESERNVR+ FA+AR AAP VLFFDELDSLAP RGRG DSGGVMDRVVAQLL ELD  +S        E G       G     VFVIGATNRPDLLD SL+RPGRFDRLLYLG + D  ++  +L+A TRKF F  D        VDL+++V   +P +FTGAD SAVA+ AL  ALRRRVAE+E
Sbjct:  465 PGTGKTLLAKAVATECGLAFLSVKGPELLDMYVGESERNVRQAFARARAAAPAVLFFDELDSLAPQRGRGSDSGGVMDRVVAQLLVELDAVSSG-------EGGXXXXREGGTERKDVFVIGATNRPDLLDSSLLRPGRFDRLLYLGHTTDAGSRRAILQAATRKFPFGED--------VDLSDVVSR-LPPNFTGADFSAVAAQALMRALRRRVAELE 667          
BLAST of mRNA_H-elongata_contig65944.14179.1 vs. uniprot
Match: A0A4W4HHW5_ELEEL (Peroxisomal biogenesis factor 6 n=1 Tax=Electrophorus electricus TaxID=8005 RepID=A0A4W4HHW5_ELEEL)

HSP 1 Score: 244 bits (622), Expect = 6.670e-74
Identity = 129/215 (60.00%), Postives = 158/215 (73.49%), Query Frame = 1
Query:    1 PPPGKTLLAKAVATECGLPFFSVKGPELLDMYVGESERNVREVFAQARLAAPCVLFFDELDSLAPARGRGGDSGGVMDRVVAQLLAELDGAASAGYKSGDPEDGRVGAISDGEASGTVFVIGATNRPDLLDPSLMRPGRFDRLLYLGVSGDRETQIKVLRAITRKFRFENDTDGNSNGGVDLAEMVRENIPSHFTGADLSAVASNALQLALRRRV 645
            P  GKTLLAKAVATEC + F SVKGPEL++MYVG+SE N+REVF +AR+AAPC++FFDELDSLAP RGR GDSGGVMDRVV+QLLAELDG  S                     SG VFVIGATNRPDLLD SL+RPGRFDRL+Y+G+  DRE+Q+++LRAI RKF+ E         GV L+E+V +  P H TGADL A+ S+A+  A++R++
Sbjct:  370 PGTGKTLLAKAVATECSMTFLSVKGPELINMYVGQSEENIREVFRKARVAAPCIIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLHS---------------------SGDVFVIGATNRPDLLDQSLLRPGRFDRLVYVGIGEDRESQLQILRAIVRKFKVE--------PGVSLSEIV-DRCPLHLTGADLYALCSDAMTSAVKRKI 554          
BLAST of mRNA_H-elongata_contig65944.14179.1 vs. uniprot
Match: A0A834AT67_9CHIR (Peroxisomal biogenesis factor 6 n=5 Tax=Laurasiatheria TaxID=314145 RepID=A0A834AT67_9CHIR)

HSP 1 Score: 240 bits (612), Expect = 8.220e-74
Identity = 129/219 (58.90%), Postives = 160/219 (73.06%), Query Frame = 1
Query:    1 PPPGKTLLAKAVATECGLPFFSVKGPELLDMYVGESERNVREVFAQARLAAPCVLFFDELDSLAPARGRGGDSGGVMDRVVAQLLAELDGAASAGYKSGDPEDGRVGAISDGEASGTVFVIGATNRPDLLDPSLMRPGRFDRLLYLGVSGDRETQIKVLRAITRKFRFENDTDGNSNGGVDLAEMVRENIPSHFTGADLSAVASNALQLALRRRVAEIE 657
            P  GKTLLAKAVATEC L F SVKGPEL++MYVG+SE NVREVFA+AR AAPC++FFDELDSLAP+RGR GDSGGVMDRVV+QLLAELDG  S                     +  VFVIGATNRPDLLDP+L+RPGRFD+L+++GVS DR +Q++VL AITRKF+ E+         V L  ++ ++ P   TGADL ++ S+A+  AL+RRV ++E
Sbjct:  234 PGTGKTLLAKAVATECSLTFLSVKGPELINMYVGQSEENVREVFARARAAAPCIIFFDELDSLAPSRGRSGDSGGVMDRVVSQLLAELDGLHS---------------------TQDVFVIGATNRPDLLDPALLRPGRFDKLVFVGVSEDRASQLRVLSAITRKFKLES--------SVSLVNVL-DHCPPQLTGADLYSLCSDAMTAALKRRVQDLE 422          
BLAST of mRNA_H-elongata_contig65944.14179.1 vs. uniprot
Match: A0A3R6XLN9_9STRA (AAA domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6XLN9_9STRA)

HSP 1 Score: 231 bits (590), Expect = 4.300e-73
Identity = 125/219 (57.08%), Postives = 149/219 (68.04%), Query Frame = 1
Query:    1 PPPGKTLLAKAVATECGLPFFSVKGPELLDMYVGESERNVREVFAQARLAAPCVLFFDELDSLAPARGRGGDSGGVMDRVVAQLLAELDGAASAGYKSGDPEDGRVGAISDGEASGTVFVIGATNRPDLLDPSLMRPGRFDRLLYLGVSGDRETQIKVLRAITRKFRFENDTDGNSNGGVDLAEMVRENIPSHFTGADLSAVASNALQLALRRRVAEIE 657
            P  GKTLLAKA+ATEC + F SVKGPELLDMY+GESE+NVR VF  AR A PC+LFFDELDSLAP RGRG DSGGVMDRVV+QLL E+D   S                        VFV+GATNRPDL++ +L+RPGRFDRLLYLG+  D+ TQ+KV++A+TRKF+   D D N+         V    P H+TGAD  A+ S AL LA++ RVA IE
Sbjct:    2 PGTGKTLLAKAIATECNMNFISVKGPELLDMYIGESEKNVRHVFQMARNARPCILFFDELDSLAPMRGRGSDSGGVMDRVVSQLLTEIDSNLS-----------------------QVFVVGATNRPDLIETALLRPGRFDRLLYLGICNDKPTQLKVVQALTRKFQLAPDVDLNA---------VVALCPFHYTGADFYALCSMALSLAIKDRVAAIE 188          
BLAST of mRNA_H-elongata_contig65944.14179.1 vs. uniprot
Match: UPI0005233B09 (peroxisome assembly factor 2-like n=2 Tax=Neognathae TaxID=8825 RepID=UPI0005233B09)

HSP 1 Score: 232 bits (591), Expect = 5.870e-73
Identity = 124/219 (56.62%), Postives = 158/219 (72.15%), Query Frame = 1
Query:    1 PPPGKTLLAKAVATECGLPFFSVKGPELLDMYVGESERNVREVFAQARLAAPCVLFFDELDSLAPARGRGGDSGGVMDRVVAQLLAELDGAASAGYKSGDPEDGRVGAISDGEASGTVFVIGATNRPDLLDPSLMRPGRFDRLLYLGVSGDRETQIKVLRAITRKFRFENDTDGNSNGGVDLAEMVRENIPSHFTGADLSAVASNALQLALRRRVAEIE 657
            P  GKTLLAKAVAT C + F SVKGPEL++MYVG+SE NVR VFA+AR AAPC++FFDELDSLAP+RGR GDSGGVMDRVV+QLLAELDG  S                     +  VFVIGATNRPDLLDP+L+RPGRFD+L+Y+G++ DRE+Q++VL A+TRKF+ +          V+L  ++ E  P+  TGAD+ A+ S+A+  A++R+V  IE
Sbjct:   48 PGTGKTLLAKAVATTCTMTFLSVKGPELINMYVGQSEENVRNVFARARAAAPCIVFFDELDSLAPSRGRSGDSGGVMDRVVSQLLAELDGLHS---------------------TREVFVIGATNRPDLLDPALLRPGRFDKLVYVGINEDRESQLQVLSAVTRKFQLD--------PSVNLTTVL-EKCPTQLTGADIYALCSDAMMCAVKRKVEWIE 236          
BLAST of mRNA_H-elongata_contig65944.14179.1 vs. uniprot
Match: A0A2D4PIH3_MICSU (AAA domain-containing protein (Fragment) n=1 Tax=Micrurus surinamensis TaxID=129470 RepID=A0A2D4PIH3_MICSU)

HSP 1 Score: 231 bits (588), Expect = 9.800e-73
Identity = 124/215 (57.67%), Postives = 155/215 (72.09%), Query Frame = 1
Query:    1 PPPGKTLLAKAVATECGLPFFSVKGPELLDMYVGESERNVREVFAQARLAAPCVLFFDELDSLAPARGRGGDSGGVMDRVVAQLLAELDGAASAGYKSGDPEDGRVGAISDGEASGTVFVIGATNRPDLLDPSLMRPGRFDRLLYLGVSGDRETQIKVLRAITRKFRFENDTDGNSNGGVDLAEMVRENIPSHFTGADLSAVASNALQLALRRRV 645
            P  GKTLLAKAVATEC + F SVKGPEL+ MYVG+SE NVREVFA+AR AAPC++FFDELDSLAP+RGR GDS GVMDRVV+QLLAELDG  S                     S  VFVIGATNRPDLLD +L+RPGRFD+L+Y+G++ DR++Q++VL AITRKF+ +          V+L  ++ +  P+  TGADL A+ S+A+  A+RR+V
Sbjct:   81 PGTGKTLLAKAVATECTMTFLSVKGPELISMYVGQSEENVREVFARARAAAPCIIFFDELDSLAPSRGRSGDSQGVMDRVVSQLLAELDGLHS---------------------SQDVFVIGATNRPDLLDSALLRPGRFDKLVYVGINEDRDSQLQVLSAITRKFKLD--------PAVNLLSVL-DRCPAQLTGADLYALCSDAMMFAIRRKV 265          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65944.14179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLK3_ECTSI2.320e-9971.43AAA ATPase domain-containing protein n=1 Tax=Ectoc... [more]
A0A836CKR6_9STRA8.600e-8670.85P-loop containing nucleoside triphosphate hydrolas... [more]
W7TWL5_9STRA1.250e-8067.12Aaa atpase domain-containing protein (Fragment) n=... [more]
A0A6H5JDF2_9PHAE2.880e-7669.90AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A4D9D6M2_9STRA2.300e-7565.30AAA domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A4W4HHW5_ELEEL6.670e-7460.00Peroxisomal biogenesis factor 6 n=1 Tax=Electropho... [more]
A0A834AT67_9CHIR8.220e-7458.90Peroxisomal biogenesis factor 6 n=5 Tax=Laurasiath... [more]
A0A3R6XLN9_9STRA4.300e-7357.08AAA domain-containing protein (Fragment) n=1 Tax=A... [more]
UPI0005233B095.870e-7356.62peroxisome assembly factor 2-like n=2 Tax=Neognath... [more]
A0A2D4PIH3_MICSU9.800e-7357.67AAA domain-containing protein (Fragment) n=1 Tax=M... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig65944contigH-elongata_contig65944:643..3265 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score323.6
Seed ortholog evalue7.6e-86
Seed eggNOG ortholog2880.D7FLK3
Preferred namePEX6
KEGG koko:K13339
KEGG TC3.A.20.1
KEGG Pathwayko04146,map04146
GOsGO:0001302,GO:0001881,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005829,GO:0006082,GO:0006605,GO:0006625,GO:0006629,GO:0006631,GO:0006635,GO:0006810,GO:0006886,GO:0006996,GO:0007031,GO:0007568,GO:0007569,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009987,GO:0015031,GO:0015833,GO:0015919,GO:0016042,GO:0016043,GO:0016054,GO:0016462,GO:0016558,GO:0016562,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017038,GO:0017111,GO:0019395,GO:0019752,GO:0023051,GO:0030258,GO:0032502,GO:0032787,GO:0033036,GO:0033365,GO:0034440,GO:0034613,GO:0042579,GO:0042886,GO:0043112,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043574,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044260,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0044743,GO:0045184,GO:0046395,GO:0046907,GO:0046982,GO:0046983,GO:0048869,GO:0050789,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0055114,GO:0065002,GO:0065007,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0072329,GO:0072594,GO:0072662,GO:0072663,GO:1901575
EggNOG free text desc.peroxisome organization
EggNOG OGsCOG0464@1,KOG0736@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Exons5
Model size681
Cds size681
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig65944.14179.1prot_H-elongata_contig65944.14179.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig65944 643..3265 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931047.0541434-CDS-H-elongata_contig65944:642..7231622931047.0541434-CDS-H-elongata_contig65944:642..723Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65944 643..723 +
1691679676.153846-CDS-H-elongata_contig65944:642..7231691679676.153846-CDS-H-elongata_contig65944:642..723Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65944 643..723 +
1622931047.0740447-CDS-H-elongata_contig65944:1348..15031622931047.0740447-CDS-H-elongata_contig65944:1348..1503Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65944 1349..1503 +
1691679676.1679726-CDS-H-elongata_contig65944:1348..15031691679676.1679726-CDS-H-elongata_contig65944:1348..1503Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65944 1349..1503 +
1622931047.0939121-CDS-H-elongata_contig65944:2061..22961622931047.0939121-CDS-H-elongata_contig65944:2061..2296Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65944 2062..2296 +
1691679676.1761968-CDS-H-elongata_contig65944:2061..22961691679676.1761968-CDS-H-elongata_contig65944:2061..2296Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65944 2062..2296 +
1622931047.1108289-CDS-H-elongata_contig65944:2687..27951622931047.1108289-CDS-H-elongata_contig65944:2687..2795Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65944 2688..2795 +
1691679676.184336-CDS-H-elongata_contig65944:2687..27951691679676.184336-CDS-H-elongata_contig65944:2687..2795Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65944 2688..2795 +
1622931047.1286464-CDS-H-elongata_contig65944:3163..32651622931047.1286464-CDS-H-elongata_contig65944:3163..3265Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65944 3164..3265 +
1691679676.1932185-CDS-H-elongata_contig65944:3163..32651691679676.1932185-CDS-H-elongata_contig65944:3163..3265Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65944 3164..3265 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig65944.14179.1

>prot_H-elongata_contig65944.14179.1 ID=prot_H-elongata_contig65944.14179.1|Name=mRNA_H-elongata_contig65944.14179.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=227bp
PPPGKTLLAKAVATECGLPFFSVKGPELLDMYVGESERNVREVFAQARLA
APCVLFFDELDSLAPARGRGGDSGGVMDRVVAQLLAELDGAASAGYKSGD
PEDGRVGAISDGEASGTVFVIGATNRPDLLDPSLMRPGRFDRLLYLGVSG
DRETQIKVLRAITRKFRFENDTDGNSNGGVDLAEMVRENIPSHFTGADLS
AVASNALQLALRRRVAEIEAQVRQQHA
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mRNA from alignment at H-elongata_contig65944:643..3265+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig65944.14179.1 ID=mRNA_H-elongata_contig65944.14179.1|Name=mRNA_H-elongata_contig65944.14179.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2623bp|location=Sequence derived from alignment at H-elongata_contig65944:643..3265+ (Himanthalia elongata Himel1 dioecious)
CCTCCGCCAGGAAAGACGCTGCTTGCCAAGGCCGTGGCGACGGAGTGCGG CCTGCCTTTCTTTAGCGTCAAGGGCCCTGAGGTGCGCGATGCTGGCAACG AGCGGTAGCATCGTCTGGTGTAGTCCCCGCTTTTCTTGGTACAAAAAAGT AAGTGTTAAGAGGCACGGCGTCTCTGAGAGAGCATCGCATGCTTGTATCG TTTCCTTCTATGCTGCTGCTCGCGGGCGAGAGAAAGCGTTCGCCCATTGG CGGTTCACATTCAACCGTAGCAGAGAAGGAAGGTTTTATGTCTTGTCTTT TCGCGTTTTGCTTTGCCACAGGCGAGTAGGAGAGGAGCGCATCGAGTTTT GCGTCTTGTTTTGCACTCTCAATCTTGTTATTTTATCTTCTTCTCTCCTC TCCGTTTGATTCTTCTTCGATGTATATTAATAGAAAATCAAATCATGAGA AATAAATAAAACGCGAACTGCGCCCTCTCCCTCTGTCTATCCTGCGTAAG CCACCCTCTACCTTGCCGAAGGTGGAGGGCAGGGCAAGGAAAAGGAGAGG GGAGGGTGTCCTCGAATGTCCGATTTCATCACGTCGACGTGCGTTTGGAT TTTGTGGCAATTTTGTGTCGTCTGGGTCTCTCTCTGCCTCTGCCCTTTTC TTCGGGGCACCAAAAGATGAGCCCTCTTTCCCACTGTTTTATTTGGCGGT TCTCAGCTCCTCGATATGTACGTGGGCGAGTCCGAGCGGAACGTGCGGGA GGTGTTCGCGCAGGCTCGGTTGGCTGCGCCGTGCGTCCTCTTCTTCGACG AGCTCGACTCCCTCGCGCCGGCCAGGGGCCGTGGAGGGGACTCCGGTGGC GTCATGGACAGGTGGGCCGCAACGGAACAAGGCGGTCGATGCCGCTGCGG CACTACGACGTAGTTACACTGTTGTGCAACGTGAACATGTAGATATAAGG AGGCGTGTGTCCGTTGTCTTCTTTGGTATTAGAGCTTTTCGTCATGGGTT TAAAACCCCCTCGAGTACACGATGACAGCAAAAAATCTGCTCCGAAACAA GAGTTAGTGCTTTTTCCTCCGCCTCACACGATCGCGGGGCGTGCAAGAAG CCCGGTTTTCTCAACAATCGAAAGCTTCGCCCCCGAGACGTGATGGCTAA AATGTATCGCTCGCGGGAACCCCCCCCCGGTTTTCAACGATACTGGGTTA ATGGCCCGCCTTCCTTCTTTCCCCGCGAGTTAGTTTGAGGGCACGCGCGT GGTTTTTCGACAAGCTTCACTCTCCCGTTACTCACGTGTTGCGGCACCGG CGGTGGTGGATGGGATCCGCAACCTGCTTACGTTACGCAAGATCCACGAT CCATCACACCCTCTTTTTTTTTATTAACCCGTTGGATTGGTACCTTCCCC CGACCTCTCGTTTCACAAGAGTCGTGGCCCAGCTCCTCGCTGAGCTCGAC GGGGCTGCGTCCGCGGGCTACAAGAGCGGCGATCCGGAAGACGGGCGAGT AGGCGCCATCAGCGATGGCGAGGCTTCGGGCACTGTGTTCGTGATCGGTG CGACCAACCGTCCGGATTTGCTGGACCCATCGTTGATGCGGCCAGGGCGC TTCGACAGGCTTTTGTATCTCGGAGTCAGCGGGGATCGCGAGACCCAGAT AAAGGTGCAGCAACGTCGGTAGGGCTCGGAAAAGGGTACCTGAAACGATT CTCCCACAAGTTACTCTCGCCCGTGTTCCGCTTGTTTTAATTCTCTCTTC GCGCAATATATTTTTGCGGCTGACTAATCATGGACTTAAAGGGTCAACTT CGATGACTGCGACAGTCCCGCGGTGGGCCGACTGCTATTAATAATAGTAC GTTGGTTGTTACTGAACCTCGGGCGGTAATCATACCCGGGAGCGCACCCG TGGCACATAGCGCTGTGGTAGTTTGTCGGGTTTCGGATTGTATCCTACCG ACCGACCCAGCCACCAGACGGTTTTCGCCAAACACTCGACAGCACGAGCG ATGCCGACCGCCATCTATCTGTTCCGCCCGCGAGAGATAAAACAGGTCCT GCGAGCTATCACAAGAAAATTCAGGTTCGAGAATGACACCGACGGCAACA GCAACGGCGGTGTCGACCTCGCAGAGATGGTCAGAGAAAACATCCCTTCT CATGTGGGTTTTTGCCGAGGCGGCGGAATCCTGCACGTTTTACGCGCCCG CGCGGACGGCTGATGATAATTTGCATTTTGTGGGCGCGTTCCAAATATAT ATCAGGTATATGATAAAACCTCTCTGAAACGTCGTTGGAGTTTCGAAGAG CGTTCCAACCTCTCCCGCCGCCGCATTTTCGCGGCTCAAGCTTGAAAAGA AACGGCTGCATCTCGACATATGCCGCCACACCGCCACACCCGGATTGCGT GGCGCCGCTTCAATCCTTAGGATATTTTTTCAAGCGTCCAACACAACCTA CCCCCTTTTCTCTCTGTCCCTTTGCTCTTCCATTTATGCCCCGTTGGCAT CCGGCGTTTGATGATCCGAAGTTTACTGGCGCCGACCTGTCAGCCGTGGC GTCGAACGCGCTGCAGCTCGCTCTTCGTCGGCGCGTGGCGGAAATCGAGG CCCAGGTGCGGCAGCAGCACGCG
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Coding sequence (CDS) from alignment at H-elongata_contig65944:643..3265+

>mRNA_H-elongata_contig65944.14179.1 ID=mRNA_H-elongata_contig65944.14179.1|Name=mRNA_H-elongata_contig65944.14179.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1362bp|location=Sequence derived from alignment at H-elongata_contig65944:643..3265+ (Himanthalia elongata Himel1 dioecious)
CCTCCGCCAGGAAAGACGCTGCTTGCCAAGGCCGTGGCGACGGAGTGCGG
CCTGCCTTTCTTTAGCGTCAAGGGCCCTGAGCCTCCGCCAGGAAAGACGC
TGCTTGCCAAGGCCGTGGCGACGGAGTGCGGCCTGCCTTTCTTTAGCGTC
AAGGGCCCTGAGCTCCTCGATATGTACGTGGGCGAGTCCGAGCGGAACGT
GCGGGAGGTGTTCGCGCAGGCTCGGTTGGCTGCGCCGTGCGTCCTCTTCT
TCGACGAGCTCGACTCCCTCGCGCCGGCCAGGGGCCGTGGAGGGGACTCC
GGTGGCGTCATGGACAGCTCCTCGATATGTACGTGGGCGAGTCCGAGCGG
AACGTGCGGGAGGTGTTCGCGCAGGCTCGGTTGGCTGCGCCGTGCGTCCT
CTTCTTCGACGAGCTCGACTCCCTCGCGCCGGCCAGGGGCCGTGGAGGGG
ACTCCGGTGGCGTCATGGACAGAGTCGTGGCCCAGCTCCTCGCTGAGCTC
GACGGGGCTGCGTCCGCGGGCTACAAGAGCGGCGATCCGGAAGACGGGCG
AGTAGGCGCCATCAGCGATGGCGAGGCTTCGGGCACTGTGTTCGTGATCG
GTGCGACCAACCGTCCGGATTTGCTGGACCCATCGTTGATGCGGCCAGGG
CGCTTCGACAGGCTTTTGTATCTCGGAGTCAGCGGGGATCGCGAGACCCA
GATAAAGAGTCGTGGCCCAGCTCCTCGCTGAGCTCGACGGGGCTGCGTCC
GCGGGCTACAAGAGCGGCGATCCGGAAGACGGGCGAGTAGGCGCCATCAG
CGATGGCGAGGCTTCGGGCACTGTGTTCGTGATCGGTGCGACCAACCGTC
CGGATTTGCTGGACCCATCGTTGATGCGGCCAGGGCGCTTCGACAGGCTT
TTGTATCTCGGAGTCAGCGGGGATCGCGAGACCCAGATAAAGGTCCTGCG
AGCTATCACAAGAAAATTCAGGTTCGAGAATGACACCGACGGCAACAGCA
ACGGCGGTGTCGACCTCGCAGAGATGGTCAGAGAAAACATCCCTTCTCAT
GTCCTGCGAGCTATCACAAGAAAATTCAGGTTCGAGAATGACACCGACGG
CAACAGCAACGGCGGTGTCGACCTCGCAGAGATGGTCAGAGAAAACATCC
CTTCTCATTTTACTGGCGCCGACCTGTCAGCCGTGGCGTCGAACGCGCTG
CAGCTCGCTCTTCGTCGGCGCGTGGCGGAAATCGAGGCCCAGGTGCGGCA
GCAGCACGCGTTTACTGGCGCCGACCTGTCAGCCGTGGCGTCGAACGCGC
TGCAGCTCGCTCTTCGTCGGCGCGTGGCGGAAATCGAGGCCCAGGTGCGG
CAGCAGCACGCG
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