mRNA_H-elongata_contig65944.14179.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig65944.14179.1 vs. uniprot
Match: D7FLK3_ECTSI (AAA ATPase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLK3_ECTSI) HSP 1 Score: 322 bits (825), Expect = 2.320e-99 Identity = 185/259 (71.43%), Postives = 194/259 (74.90%), Query Frame = 1
Query: 1 PPPGKTLLAKAVATECGLPFFSVKGPELLDMYVGESERNVREVFAQARLAAPCVLFFDELDSLAPARGRGGDSGGVMDRVVAQLLAELDGAASAGY------------------------------KSGDPEDGRVGAISDGEASG--TVFVIGATNRPDLLDPSLMRPGRFDRLLYLGVSGDRETQIKVLRAITRKFRFENDTDGNSNGGVDLAEMVRENIPSHFTGADLSAVASNALQLALRRRVAEIEAQVRQQHA 681
P GKTLLAKAVATECGLPFFSVKGPELLDMYVGESERNVREVFAQARLAAPCVLFFDELDSLAPARGRGGDSGGVMDRVVAQLLAELDGAAS + G E + G TVFVIGATNRPDLLDPSLMRPGRFDRLLYLGVSGDRETQ KVLRAITRKF FE + +S GVDLAE+VR+ IP FTGADLSAVASNALQLALRRRVAEIEA+V + +A
Sbjct: 846 PGTGKTLLAKAVATECGLPFFSVKGPELLDMYVGESERNVREVFAQARLAAPCVLFFDELDSLAPARGRGGDSGGVMDRVVAQLLAELDGAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXVHRHQRHGQDESYXXXXXXXXDTVGEETVFVIGATNRPDLLDPSLMRPGRFDRLLYLGVSGDRETQTKVLRAITRKFGFEEE---DSEHGVDLAEIVRDRIPPQFTGADLSAVASNALQLALRRRVAEIEAEVAETNA 1101
BLAST of mRNA_H-elongata_contig65944.14179.1 vs. uniprot
Match: A0A836CKR6_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKR6_9STRA) HSP 1 Score: 281 bits (720), Expect = 8.600e-86 Identity = 158/223 (70.85%), Postives = 171/223 (76.68%), Query Frame = 1
Query: 1 PPPGKTLLAKAVATECGLPFFSVKGPELLDMYVGESERNVREVFAQARLAAPCVLFFDELDSLAPARGRGGDSGGVMDRVVAQLLAELDGAASAGYKSGDPEDGRVGAISDGEASGTVFVIGATNRPDLLDPSLMRPGRFDRLLYLGVSGDRETQIKVLRAITRKFRFENDTDGNSNGGVDLAEMVRENIPSHFTGADLSAVASNALQLALRRRVAEIEAQVR 669
P GKTLLAKAVATECGL FFSVKGPELLDMYVGESERNVREVF QAR AAPCVLFFDELDSLAP RGRG DSGGVMDRVV+QLL+ELDG V A +DG A VFVIGATNRPDLLDPSL+RPGRFDRLLYLG GD +TQ+KVL A TRKF FE+ GV LAE+ R IP+ FTGAD+SAVAS AL AL+RR+AE+EA R
Sbjct: 656 PGTGKTLLAKAVATECGLAFFSVKGPELLDMYVGESERNVREVFRQARSAAPCVLFFDELDSLAPQRGRGADSGGVMDRVVSQLLSELDG---------------VSAGADGRA---VFVIGATNRPDLLDPSLLRPGRFDRLLYLGTGGDTDTQLKVLSAATRKFTFED--------GVSLAEVARA-IPATFTGADMSAVASAALMAALKRRIAEVEAAAR 851
BLAST of mRNA_H-elongata_contig65944.14179.1 vs. uniprot
Match: W7TWL5_9STRA (Aaa atpase domain-containing protein (Fragment) n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TWL5_9STRA) HSP 1 Score: 255 bits (651), Expect = 1.250e-80 Identity = 147/219 (67.12%), Postives = 165/219 (75.34%), Query Frame = 1
Query: 1 PPPGKTLLAKAVATECGLPFFSVKGPELLDMYVGESERNVREVFAQARLAAPCVLFFDELDSLAPARGRGGDSGGVMDRVVAQLLAELDGAASAGYKSGDPEDGRVGAISDGEASGTVFVIGATNRPDLLDPSLMRPGRFDRLLYLGVSGDRETQIKVLRAITRKFRFENDTDGNSNGGVDLAEMVRENIPSHFTGADLSAVASNALQLALRRRVAEIE 657
P GKTLLAKAVATECGL F SVKGPELLDMYVGESERNVR+ FA+AR AAP VLFFDELDSLAP RGRG DSGGVMDRVVAQLL ELD A S+G + G E GR G + VFVIGATNRPDLLD SL+RPGRFDRLLYLG + D ++ +L+A TRKF F D VDL+++V +P +FTGAD SAVA+ AL ALRRRVAE+E
Sbjct: 55 PGTGKTLLAKAVATECGLAFLSVKGPELLDMYVGESERNVRQAFARARAAAPAVLFFDELDSLAPQRGRGSDSGGVMDRVVAQLLVELD-AVSSGERGG--EGGREGETGRQD----VFVIGATNRPDLLDSSLLRPGRFDRLLYLGNTTDAGSRRAILQAATRKFPFGED--------VDLSDVVSR-LPPNFTGADFSAVAAQALMRALRRRVAELE 257
BLAST of mRNA_H-elongata_contig65944.14179.1 vs. uniprot
Match: A0A6H5JDF2_9PHAE (AAA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDF2_9PHAE) HSP 1 Score: 258 bits (658), Expect = 2.880e-76 Identity = 144/206 (69.90%), Postives = 147/206 (71.36%), Query Frame = 1
Query: 1 PPPGKTLLAKAVATECGLPFFSVKGPELLDMYVGESERNVREVFAQARLAAPCVLFFDELDSLAPARGRGGDSGGVMDRVVAQLLAELDGAASAGYKSGDPEDGRV----------------------------------GAISDGEASGTVFVIGATNRPDLLDPSLMRPGRFDRLLYLGVSGDRETQIKVLRAITRKFRFENDT 516
P GKTLLAKAVATECGLPFFSVKGPELLDMYVGESERNVREVFAQARLAAPCVLFFDELDSLAPARGRGGDSGGVMDRVVAQLLAELDGAAS G+ D TVFVIGATNRPDLLDPSLMRPGRFDRLLYLGVSGD+ETQ KVLRAITRKF FE D+
Sbjct: 834 PGTGKTLLAKAVATECGLPFFSVKGPELLDMYVGESERNVREVFAQARLAAPCVLFFDELDSLAPARGRGGDSGGVMDRVVAQLLAELDGAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYXXXXGSGGDTVGGDTVFVIGATNRPDLLDPSLMRPGRFDRLLYLGVSGDQETQTKVLRAITRKFGFEEDS 1039
BLAST of mRNA_H-elongata_contig65944.14179.1 vs. uniprot
Match: A0A4D9D6M2_9STRA (AAA domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D6M2_9STRA) HSP 1 Score: 252 bits (643), Expect = 2.300e-75 Identity = 143/219 (65.30%), Postives = 159/219 (72.60%), Query Frame = 1
Query: 1 PPPGKTLLAKAVATECGLPFFSVKGPELLDMYVGESERNVREVFAQARLAAPCVLFFDELDSLAPARGRGGDSGGVMDRVVAQLLAELDGAASAGYKSGDPEDGRVGAISDGEASGTVFVIGATNRPDLLDPSLMRPGRFDRLLYLGVSGDRETQIKVLRAITRKFRFENDTDGNSNGGVDLAEMVRENIPSHFTGADLSAVASNALQLALRRRVAEIE 657
P GKTLLAKAVATECGL F SVKGPELLDMYVGESERNVR+ FA+AR AAP VLFFDELDSLAP RGRG DSGGVMDRVVAQLL ELD +S E G G VFVIGATNRPDLLD SL+RPGRFDRLLYLG + D ++ +L+A TRKF F D VDL+++V +P +FTGAD SAVA+ AL ALRRRVAE+E
Sbjct: 465 PGTGKTLLAKAVATECGLAFLSVKGPELLDMYVGESERNVRQAFARARAAAPAVLFFDELDSLAPQRGRGSDSGGVMDRVVAQLLVELDAVSSG-------EGGXXXXREGGTERKDVFVIGATNRPDLLDSSLLRPGRFDRLLYLGHTTDAGSRRAILQAATRKFPFGED--------VDLSDVVSR-LPPNFTGADFSAVAAQALMRALRRRVAELE 667
BLAST of mRNA_H-elongata_contig65944.14179.1 vs. uniprot
Match: A0A4W4HHW5_ELEEL (Peroxisomal biogenesis factor 6 n=1 Tax=Electrophorus electricus TaxID=8005 RepID=A0A4W4HHW5_ELEEL) HSP 1 Score: 244 bits (622), Expect = 6.670e-74 Identity = 129/215 (60.00%), Postives = 158/215 (73.49%), Query Frame = 1
Query: 1 PPPGKTLLAKAVATECGLPFFSVKGPELLDMYVGESERNVREVFAQARLAAPCVLFFDELDSLAPARGRGGDSGGVMDRVVAQLLAELDGAASAGYKSGDPEDGRVGAISDGEASGTVFVIGATNRPDLLDPSLMRPGRFDRLLYLGVSGDRETQIKVLRAITRKFRFENDTDGNSNGGVDLAEMVRENIPSHFTGADLSAVASNALQLALRRRV 645
P GKTLLAKAVATEC + F SVKGPEL++MYVG+SE N+REVF +AR+AAPC++FFDELDSLAP RGR GDSGGVMDRVV+QLLAELDG S SG VFVIGATNRPDLLD SL+RPGRFDRL+Y+G+ DRE+Q+++LRAI RKF+ E GV L+E+V + P H TGADL A+ S+A+ A++R++
Sbjct: 370 PGTGKTLLAKAVATECSMTFLSVKGPELINMYVGQSEENIREVFRKARVAAPCIIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLHS---------------------SGDVFVIGATNRPDLLDQSLLRPGRFDRLVYVGIGEDRESQLQILRAIVRKFKVE--------PGVSLSEIV-DRCPLHLTGADLYALCSDAMTSAVKRKI 554
BLAST of mRNA_H-elongata_contig65944.14179.1 vs. uniprot
Match: A0A834AT67_9CHIR (Peroxisomal biogenesis factor 6 n=5 Tax=Laurasiatheria TaxID=314145 RepID=A0A834AT67_9CHIR) HSP 1 Score: 240 bits (612), Expect = 8.220e-74 Identity = 129/219 (58.90%), Postives = 160/219 (73.06%), Query Frame = 1
Query: 1 PPPGKTLLAKAVATECGLPFFSVKGPELLDMYVGESERNVREVFAQARLAAPCVLFFDELDSLAPARGRGGDSGGVMDRVVAQLLAELDGAASAGYKSGDPEDGRVGAISDGEASGTVFVIGATNRPDLLDPSLMRPGRFDRLLYLGVSGDRETQIKVLRAITRKFRFENDTDGNSNGGVDLAEMVRENIPSHFTGADLSAVASNALQLALRRRVAEIE 657
P GKTLLAKAVATEC L F SVKGPEL++MYVG+SE NVREVFA+AR AAPC++FFDELDSLAP+RGR GDSGGVMDRVV+QLLAELDG S + VFVIGATNRPDLLDP+L+RPGRFD+L+++GVS DR +Q++VL AITRKF+ E+ V L ++ ++ P TGADL ++ S+A+ AL+RRV ++E
Sbjct: 234 PGTGKTLLAKAVATECSLTFLSVKGPELINMYVGQSEENVREVFARARAAAPCIIFFDELDSLAPSRGRSGDSGGVMDRVVSQLLAELDGLHS---------------------TQDVFVIGATNRPDLLDPALLRPGRFDKLVFVGVSEDRASQLRVLSAITRKFKLES--------SVSLVNVL-DHCPPQLTGADLYSLCSDAMTAALKRRVQDLE 422
BLAST of mRNA_H-elongata_contig65944.14179.1 vs. uniprot
Match: A0A3R6XLN9_9STRA (AAA domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6XLN9_9STRA) HSP 1 Score: 231 bits (590), Expect = 4.300e-73 Identity = 125/219 (57.08%), Postives = 149/219 (68.04%), Query Frame = 1
Query: 1 PPPGKTLLAKAVATECGLPFFSVKGPELLDMYVGESERNVREVFAQARLAAPCVLFFDELDSLAPARGRGGDSGGVMDRVVAQLLAELDGAASAGYKSGDPEDGRVGAISDGEASGTVFVIGATNRPDLLDPSLMRPGRFDRLLYLGVSGDRETQIKVLRAITRKFRFENDTDGNSNGGVDLAEMVRENIPSHFTGADLSAVASNALQLALRRRVAEIE 657
P GKTLLAKA+ATEC + F SVKGPELLDMY+GESE+NVR VF AR A PC+LFFDELDSLAP RGRG DSGGVMDRVV+QLL E+D S VFV+GATNRPDL++ +L+RPGRFDRLLYLG+ D+ TQ+KV++A+TRKF+ D D N+ V P H+TGAD A+ S AL LA++ RVA IE
Sbjct: 2 PGTGKTLLAKAIATECNMNFISVKGPELLDMYIGESEKNVRHVFQMARNARPCILFFDELDSLAPMRGRGSDSGGVMDRVVSQLLTEIDSNLS-----------------------QVFVVGATNRPDLIETALLRPGRFDRLLYLGICNDKPTQLKVVQALTRKFQLAPDVDLNA---------VVALCPFHYTGADFYALCSMALSLAIKDRVAAIE 188
BLAST of mRNA_H-elongata_contig65944.14179.1 vs. uniprot
Match: UPI0005233B09 (peroxisome assembly factor 2-like n=2 Tax=Neognathae TaxID=8825 RepID=UPI0005233B09) HSP 1 Score: 232 bits (591), Expect = 5.870e-73 Identity = 124/219 (56.62%), Postives = 158/219 (72.15%), Query Frame = 1
Query: 1 PPPGKTLLAKAVATECGLPFFSVKGPELLDMYVGESERNVREVFAQARLAAPCVLFFDELDSLAPARGRGGDSGGVMDRVVAQLLAELDGAASAGYKSGDPEDGRVGAISDGEASGTVFVIGATNRPDLLDPSLMRPGRFDRLLYLGVSGDRETQIKVLRAITRKFRFENDTDGNSNGGVDLAEMVRENIPSHFTGADLSAVASNALQLALRRRVAEIE 657
P GKTLLAKAVAT C + F SVKGPEL++MYVG+SE NVR VFA+AR AAPC++FFDELDSLAP+RGR GDSGGVMDRVV+QLLAELDG S + VFVIGATNRPDLLDP+L+RPGRFD+L+Y+G++ DRE+Q++VL A+TRKF+ + V+L ++ E P+ TGAD+ A+ S+A+ A++R+V IE
Sbjct: 48 PGTGKTLLAKAVATTCTMTFLSVKGPELINMYVGQSEENVRNVFARARAAAPCIVFFDELDSLAPSRGRSGDSGGVMDRVVSQLLAELDGLHS---------------------TREVFVIGATNRPDLLDPALLRPGRFDKLVYVGINEDRESQLQVLSAVTRKFQLD--------PSVNLTTVL-EKCPTQLTGADIYALCSDAMMCAVKRKVEWIE 236
BLAST of mRNA_H-elongata_contig65944.14179.1 vs. uniprot
Match: A0A2D4PIH3_MICSU (AAA domain-containing protein (Fragment) n=1 Tax=Micrurus surinamensis TaxID=129470 RepID=A0A2D4PIH3_MICSU) HSP 1 Score: 231 bits (588), Expect = 9.800e-73 Identity = 124/215 (57.67%), Postives = 155/215 (72.09%), Query Frame = 1
Query: 1 PPPGKTLLAKAVATECGLPFFSVKGPELLDMYVGESERNVREVFAQARLAAPCVLFFDELDSLAPARGRGGDSGGVMDRVVAQLLAELDGAASAGYKSGDPEDGRVGAISDGEASGTVFVIGATNRPDLLDPSLMRPGRFDRLLYLGVSGDRETQIKVLRAITRKFRFENDTDGNSNGGVDLAEMVRENIPSHFTGADLSAVASNALQLALRRRV 645
P GKTLLAKAVATEC + F SVKGPEL+ MYVG+SE NVREVFA+AR AAPC++FFDELDSLAP+RGR GDS GVMDRVV+QLLAELDG S S VFVIGATNRPDLLD +L+RPGRFD+L+Y+G++ DR++Q++VL AITRKF+ + V+L ++ + P+ TGADL A+ S+A+ A+RR+V
Sbjct: 81 PGTGKTLLAKAVATECTMTFLSVKGPELISMYVGQSEENVREVFARARAAAPCIIFFDELDSLAPSRGRSGDSQGVMDRVVSQLLAELDGLHS---------------------SQDVFVIGATNRPDLLDSALLRPGRFDKLVYVGINEDRDSQLQVLSAITRKFKLD--------PAVNLLSVL-DRCPAQLTGADLYALCSDAMMFAIRRKV 265 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65944.14179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig65944.14179.1 >prot_H-elongata_contig65944.14179.1 ID=prot_H-elongata_contig65944.14179.1|Name=mRNA_H-elongata_contig65944.14179.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=227bp PPPGKTLLAKAVATECGLPFFSVKGPELLDMYVGESERNVREVFAQARLAback to top mRNA from alignment at H-elongata_contig65944:643..3265+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig65944.14179.1 ID=mRNA_H-elongata_contig65944.14179.1|Name=mRNA_H-elongata_contig65944.14179.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2623bp|location=Sequence derived from alignment at H-elongata_contig65944:643..3265+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig65944:643..3265+ >mRNA_H-elongata_contig65944.14179.1 ID=mRNA_H-elongata_contig65944.14179.1|Name=mRNA_H-elongata_contig65944.14179.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1362bp|location=Sequence derived from alignment at H-elongata_contig65944:643..3265+ (Himanthalia elongata Himel1 dioecious)back to top |