mRNA_H-elongata_contig5619.13062.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig5619.13062.1 vs. uniprot
Match: D8LMN3_ECTSI (CNOT1_TTP_bind domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMN3_ECTSI) HSP 1 Score: 549 bits (1414), Expect = 7.320e-183 Identity = 285/330 (86.36%), Postives = 300/330 (90.91%), Query Frame = 1
Query: 1 VLRIMRLVPECAPELLGSEDCAFAIAVASVAFGAEVSPMANPLPQPLPSNPLPSLDLDKWCAERLARKDREVFAASVLSFVQSHFPLARLRQLSQKQGDTSGEGLLPTCAMSLEASAILLKSLGATGLVSPAAEALAKKNPAIQASAKQLAEAGKKMHPTLNSLLNPPEEIESMADSYFQRIYTAEQSIEEVIDMLERFKTSSDTREQEIFACMVHNLFDEYRFFHNYPEKELRITGILFGSLIQHQLVSSITLGIALRYVLEALRRPPGPDNAGKMFRFGMFALEQFKGRLGEWPQYCSHIVQIPHLVGNHPSLVEEIERSIQRQGGGG 990
VLRIMRLVP+CA ELLG++DCAFA+AVASV FGAE+ P N P P LDLDKW AERL RKDREVFAA VLSFVQ HFP AR+RQ +QK G+T GEG+LPTCAMSLEA+AILLK+LGATGLVSPAAEALAKKNP IQASAKQLAEAGKKMHPTLN LLNPPEEIESMA+SYFQRIYTAEQSIEEVI MLERFK+SSDTREQEIFACMVHNLFDEYRFFHNYPEKELRITGIL GSLIQHQLVSSITLGIALRYVLEALRR PGPD AGKMFRFGMFALEQFKGRLGEWPQYCSHIVQIPHLVGNHP+LVEEIERS+QRQGGGG
Sbjct: 657 VLRIMRLVPDCAAELLGADDCAFAVAVASVVFGAELPPTPN---APQXXXXXPPLDLDKWGAERLGRKDREVFAARVLSFVQLHFPTARMRQAAQKPGETPGEGMLPTCAMSLEAAAILLKALGATGLVSPAAEALAKKNPGIQASAKQLAEAGKKMHPTLNQLLNPPEEIESMANSYFQRIYTAEQSIEEVIAMLERFKSSSDTREQEIFACMVHNLFDEYRFFHNYPEKELRITGILLGSLIQHQLVSSITLGIALRYVLEALRRAPGPDPAGKMFRFGMFALEQFKGRLGEWPQYCSHIVQIPHLVGNHPALVEEIERSMQRQGGGG 983
BLAST of mRNA_H-elongata_contig5619.13062.1 vs. uniprot
Match: A0A6H5JXN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN6_9PHAE) HSP 1 Score: 544 bits (1401), Expect = 9.790e-171 Identity = 283/329 (86.02%), Postives = 297/329 (90.27%), Query Frame = 1
Query: 1 VLRIMRLVPECAPELLGSEDCAFAIAVASVAFGAEVSPMANPLPQPLPSNPLPSLDLDKWCAERLARKDREVFAASVLSFVQSHFPLARLRQLSQKQGDTSGEGLLPTCAMSLEASAILLKSLGATGLVSPAAEALAKKNPAIQASAKQLAEAGKKMHPTLNSLLNPPEEIESMADSYFQRIYTAEQSIEEVIDMLERFKTSSDTREQEIFACMVHNLFDEYRFFHNYPEKELRITGILFGSLIQHQLVSSITLGIALRYVLEALRRPPGPDNAGKMFRFGMFALEQFKGRLGEWPQYCSHIVQIPHLVGNHPSLVEEIERSIQRQGGG 987
VLRIMRLVP+CA ELLG++DCAFA+AVASV FGAE+ P N P LDLDKW AERL RKDREVFAA VLSFVQ HFP AR+RQ +QK G+T GEG+LPTCAMSLEA+AILLK LGATGLVSPAAEALAKKNP IQASAKQLAEAGKKMHPTLN LLNPPEEIESMA+SYFQRIYTAEQSIEEVI MLERFK+SSDTREQEIFACMVHNLFDEYRFFHNYPEKELRITGIL GSLIQHQLVSSITLGIALRYVLEALRR PGPD AGKMFRFGMFALEQFKGRLGEWPQYCSHIVQIPHLVGNHP+LVEEIERS+QRQGGG
Sbjct: 685 VLRIMRLVPDCAAELLGADDCAFAVAVASVVFGAELPPTPN---SPQXXXXXXXLDLDKWGAERLGRKDREVFAARVLSFVQLHFPTARMRQAAQKPGETPGEGMLPTCAMSLEAAAILLKMLGATGLVSPAAEALAKKNPGIQASAKQLAEAGKKMHPTLNQLLNPPEEIESMANSYFQRIYTAEQSIEEVIAMLERFKSSSDTREQEIFACMVHNLFDEYRFFHNYPEKELRITGILLGSLIQHQLVSSITLGIALRYVLEALRRAPGPDPAGKMFRFGMFALEQFKGRLGEWPQYCSHIVQIPHLVGNHPALVEEIERSMQRQGGG 1010
BLAST of mRNA_H-elongata_contig5619.13062.1 vs. uniprot
Match: A0A835ZHM2_9STRA (CCR4-Not complex component, Not1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHM2_9STRA) HSP 1 Score: 287 bits (735), Expect = 1.080e-81 Identity = 176/380 (46.32%), Postives = 218/380 (57.37%), Query Frame = 1
Query: 1 VLRIMRLVPECAPELLGSEDCAFAIAVASVAFGAEVSPMANPLPQPLPSNPLPSLDLDKWCAERLARKDREVFAASVLSFVQSHFPLARLRQLSQKQGDTSGEGLLPTCAMSLEASAILLKSLGATGLVSPAAEALAKKNPAIQASAKQLAEAGKKMHPTLNSLLN---------------------------------------------------------PPEEIESMADSYFQRIYTAEQSIEEVIDMLERFKTSSDTREQEIFACMVHNLFDEYRFFHNYPEKELRITGILFGSLIQHQLVSSITLGIALRYVLEALRRPPGPDNAGKMFRFGMFALEQFKGRLGEWPQYCSHIVQIPHLVGNHPSLVEEIERSI 969
VLR+ R+VPE P LLGS+D FAI +A +A+GAE + P+ +DL+ W +ERL R++ E FAA +LSF+ ++ A R +SQ Q + + + +C + +EA A L+++ GL P A AL + MHP L+ P +I MA++YFQRIYT+EQSI EV++ML RF+ S D REQ+IFACMVHNLFDEYRFFH YPEKELRITG+LFG LIQ LVSSITLGIALRYVLEALR+PPGP GKMFRFGMFALEQFKGRLGEWPQYCSHI I HL HP LV E+ER++
Sbjct: 594 VLRVARVVPEALPALLGSDDAPFAICLACIAYGAERADA--------PARE--RIDLEAWASERL-RREGEPFAARLLSFLNTNVATALPRDVSQAQANAADGDVGISCMLCIEALAACLRAVA--GL--PGAAALGXXXXXXXXXXXXXXXXXR-MHPAFAQLMGAVATPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQPASDIMEMANAYFQRIYTSEQSIPEVLEMLRRFQASDDKREQDIFACMVHNLFDEYRFFHKYPEKELRITGVLFGMLIQQGLVSSITLGIALRYVLEALRKPPGPGAEGKMFRFGMFALEQFKGRLGEWPQYCSHIASIQHLAAQHPELVREMERAM 957
BLAST of mRNA_H-elongata_contig5619.13062.1 vs. uniprot
Match: W7TUR4_9STRA (Ccr4-not transcription n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TUR4_9STRA) HSP 1 Score: 281 bits (720), Expect = 1.060e-79 Identity = 168/336 (50.00%), Postives = 212/336 (63.10%), Query Frame = 1
Query: 1 VLRIMRLVPECAPELLGSEDCAFAIAVASVAFGAEVSPMANPLPQPLPSNPLPSLDLDKWCAERLARK-DREVFAASVLSFVQSHFPLARLRQLSQKQGDTSGEGLLPTCAMSLEASAILLKSLGAT-GLVSPAAEALAKKNPAIQASAKQLAEAGKKMHPT--------LNSLLNPPEEIESMADSYFQRIYTAEQSIEEVIDMLERFKTSSDTREQEIFACMVHNLFDEYRFFHNYPEKELRITGILFGSLIQHQLVSSITLGIALRYVLEALRRPPGPDNAGKMFRFGMFALEQFKGRLGEWPQYCSHIVQIPHLVGNHPSLVEEIERSIQRQ 978
+L +M LVP ++L S F +A+A+ A E L+L+K+ AE+L+ ++E FA LSFV H ARLR S G+ +P +S E+ LLK LG L ++ + A++ +K+ E G + IE MA++YFQ+IYT+EQSI +VI+ML+RFK+S D +E EIFACM+ NLFDEYRFFH YPEKELRITGILFGSLIQHQLVSS+TLG+ALRYVLEALRRPPGP NAGK +RFGMFALEQF+GRL EWPQYCSH++QIPHL NHP LV EIER++ RQ
Sbjct: 581 ILAVMLLVPSTQQDVLSSSCTEFVVALAAAAADKE------------------QLNLEKFIAEKLSSSTNKENFARGTLSFVHKHAGHARLR--SAVVGND-----VPPVLLSEESLVSLLKVLGQDPDLRQGGSQVAMEVKQALELYSKRFMEVGSANQGAGAAXXXXXXXXXXXXSDAIEEMANAYFQKIYTSEQSIPDVIEMLKRFKSSKDAKELEIFACMIRNLFDEYRFFHKYPEKELRITGILFGSLIQHQLVSSLTLGVALRYVLEALRRPPGPGNAGKWYRFGMFALEQFQGRLHEWPQYCSHLIQIPHLRQNHPDLVLEIERAMSRQ 891
BLAST of mRNA_H-elongata_contig5619.13062.1 vs. uniprot
Match: A0A7S2G852_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G852_9STRA) HSP 1 Score: 258 bits (660), Expect = 1.000e-77 Identity = 127/163 (77.91%), Postives = 142/163 (87.12%), Query Frame = 1
Query: 505 EEIESMADSYFQRIYTAEQSIEEVIDMLERFKTSSDTREQEIFACMVHNLFDEYRFFHNYPEKELRITGILFGSLIQHQLVSSITLGIALRYVLEALRRPPGPDNAGKMFRFGMFALEQFKGRLGEWPQYCSHIVQIPHLVGNHPSLVEEIERSIQRQGGGGG 993
+EIE MA+SYFQ+IYT+EQSI EVIDML++FKTS + REQEIFACM+HNLFDEYRFFH YPEKELRITGILFG+LIQHQLVSSITLGIALRYVLEALR+ PG GKMFRFGMFALEQFK RL EWPQYCSHIVQI HL H LV+EI+R+++ GGGG
Sbjct: 253 DEIEDMANSYFQKIYTSEQSIAEVIDMLKKFKTSPNQREQEIFACMIHNLFDEYRFFHKYPEKELRITGILFGTLIQHQLVSSITLGIALRYVLEALRKAPGSGANGKMFRFGMFALEQFKARLYEWPQYCSHIVQIDHLCQQHAELVDEIQRAMKSSKGGGG 415
BLAST of mRNA_H-elongata_contig5619.13062.1 vs. uniprot
Match: A0A7S2RR73_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RR73_9STRA) HSP 1 Score: 248 bits (632), Expect = 5.970e-77 Identity = 122/150 (81.33%), Postives = 136/150 (90.67%), Query Frame = 1
Query: 523 ADSYFQRIYTAEQSIEEVIDMLERFKTSSDTREQEIFACMVHNLFDEYRFFHNYPEKELRITGILFGSLIQHQLVSSITLGIALRYVLEALRRPPGPDNAGKMFRFGMFALEQFKGRLGEWPQYCSHIVQIPHLVGNHPSLVEEIERSIQ 972
A+SYFQ+IYT+EQSI EVI+ML+RFKTSS+ REQEIFACM+HNLFDEYRFFH YPEKELRITGILFG+LIQHQLVSSITLGIALRYVLEALR+P +GKMFRFGMFALEQFK RL EWPQYCSHIVQI +L NHP LVEEI+R++Q
Sbjct: 1 ANSYFQKIYTSEQSIAEVIEMLKRFKTSSNQREQEIFACMIHNLFDEYRFFHKYPEKELRITGILFGTLIQHQLVSSITLGIALRYVLEALRKPHW--QSGKMFRFGMFALEQFKARLSEWPQYCSHIVQIDYLNANHPDLVEEIKRAMQ 148
BLAST of mRNA_H-elongata_contig5619.13062.1 vs. uniprot
Match: A0A1Z5JVQ8_FISSO (CCR4-NOT transcription complex subunit 1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JVQ8_FISSO) HSP 1 Score: 255 bits (651), Expect = 1.440e-70 Identity = 167/364 (45.88%), Postives = 216/364 (59.34%), Query Frame = 1
Query: 1 VLRIMRLVPECAPE----LLGSEDCAFAIAVASVAFGAEVSPMANPLPQPLPSNPLPSLDLDKWCAERLARKDREV-FAASVLSFVQSHFPLARLRQLSQKQGDTSGEGL-LPTCAMSLEASAILLKSLGATGLVSPAAEALAK--KNPAIQASAKQLAEAGKKMHPTLNSLL---NPP---------EEIESMADSYFQRIYTAEQSIEEVIDMLERFKTSSDTREQEIFACMVHNLFDEYRFFHNYPEKELRITGILFGSLIQHQLVSSITLGIALRYVLEALRRPPGPDNAGKMFRFGMFALEQFKGRLGEWPQYCSHIVQIPHLVGNHPSLVEEIE------------RSIQRQGGGGGT 996
++ I RL+P A L G++D ++I++A V + L L W E+L K FA S++S+++ + A+ R G G + L +SL+ LL+SL A+ L P +L + + + K L +A HP+L L NPP E++E MA +YFQ+IYT+EQSI +V++ML+RFKTS +++E EIFACMVHNLF+EYRFF+ YPEKELRITGILFG+LIQ QLVSSITLGIALRYVLEALR+PP + GKMF+FGMFALEQFKGRL EWPQYCSHIVQIPHL + LV EIE S+ Q GGGT
Sbjct: 510 IINIARLLPSPADAVASLLSGNKDAEYSISIAFVMSDNDF------------------LQLKPWLGEKLTSKGYAAPFAFSLVSYLRKTYAAAKPRV-----GGADGPLVSLENIVISLQ----LLESLEASVLAQPVVGSLDRVLATGTLGENVKSLMDACLTAHPSLRVALSGQNPPTPLAPLTSSEDVEDMATAYFQKIYTSEQSIGDVVEMLKRFKTSGNSKENEIFACMVHNLFNEYRFFNKYPEKELRITGILFGALIQEQLVSSITLGIALRYVLEALRKPPETTSTGKMFKFGMFALEQFKGRLHEWPQYCSHIVQIPHLKEKYAELVAEIESEMNKSQKRGSGNSVDSQSSGGGT 846
BLAST of mRNA_H-elongata_contig5619.13062.1 vs. uniprot
Match: A0A7S4W626_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4W626_9STRA) HSP 1 Score: 253 bits (647), Expect = 4.710e-70 Identity = 146/283 (51.59%), Postives = 194/283 (68.55%), Query Frame = 1
Query: 169 LDKWCAER--LARKDREVFAASVLSFVQSHFPLARLRQLSQKQGDTSGEGL--LPTCAMSLEASAILLKSLGATGLVSPAAEALAKKNPAIQA--SAKQLAEAGKKMHPTLNSLLNPP----EEIESMADSYFQRIYTAEQSIEEVIDMLERFKTSSDTREQEIFACMVHNLFDEYRFFHNYPEKELRITGILFGSLIQHQLVSSITLGIALRYVLEALRRPPGPD------NAGKMFRFGMFALEQFKGRLGEWPQYCSHIVQIPHLVGNHPSLVEEIERSI 969
L +W +ER +R VF S++++ L+R + + + G L + A SL+ L ++ + + +PA+++ + ++ S K+L +A +HP+LN+++ ++IE MA+SYFQ+IYT+EQSI EV++ML+RFK S + RE +IFACM+HNLFDEYRFF YPEKELRITGILFG LIQHQLVSSITLGIALRYVLEALR+PP P N+GKMFRFGMFALEQFKGRL EWPQYCSHIVQIPHL + LV+EIE ++
Sbjct: 436 LREWFSERRNATAVERNVFVLSLIAY------LSRTHTAALARNNDGGPPLVSIENIATSLQFLQGLDNAILSQQISNPASQSAENSSSSLTIGDSVKRLIDACVSVHPSLNNVIKQTSGNADDIEEMANSYFQKIYTSEQSIIEVVEMLKRFKISGNARENDIFACMIHNLFDEYRFFSKYPEKELRITGILFGMLIQHQLVSSITLGIALRYVLEALRKPPTPSVSTPNSNSGKMFRFGMFALEQFKGRLHEWPQYCSHIVQIPHLREKYSLLVDEIEGTM 712
BLAST of mRNA_H-elongata_contig5619.13062.1 vs. uniprot
Match: A0A7S4RY41_9STRA (Hypothetical protein n=10 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RY41_9STRA) HSP 1 Score: 253 bits (647), Expect = 5.000e-70 Identity = 146/283 (51.59%), Postives = 194/283 (68.55%), Query Frame = 1
Query: 169 LDKWCAER--LARKDREVFAASVLSFVQSHFPLARLRQLSQKQGDTSGEGL--LPTCAMSLEASAILLKSLGATGLVSPAAEALAKKNPAIQA--SAKQLAEAGKKMHPTLNSLLNPP----EEIESMADSYFQRIYTAEQSIEEVIDMLERFKTSSDTREQEIFACMVHNLFDEYRFFHNYPEKELRITGILFGSLIQHQLVSSITLGIALRYVLEALRRPPGPD------NAGKMFRFGMFALEQFKGRLGEWPQYCSHIVQIPHLVGNHPSLVEEIERSI 969
L +W +ER +R VF S++++ L+R + + + G L + A SL+ L ++ + + +PA+++ + ++ S K+L +A +HP+LN+++ ++IE MA+SYFQ+IYT+EQSI EV++ML+RFK S + RE +IFACM+HNLFDEYRFF YPEKELRITGILFG LIQHQLVSSITLGIALRYVLEALR+PP P N+GKMFRFGMFALEQFKGRL EWPQYCSHIVQIPHL + LV+EIE ++
Sbjct: 703 LREWFSERRNATAVERNVFVLSLIAY------LSRTHTAALARNNDGGPPLVSIENIATSLQFLQGLDNAILSQQISNPASQSAENSSSSLTIGDSVKRLIDACVSVHPSLNNVIKQTSGNADDIEEMANSYFQKIYTSEQSIIEVVEMLKRFKISGNARENDIFACMIHNLFDEYRFFSKYPEKELRITGILFGMLIQHQLVSSITLGIALRYVLEALRKPPTPSVSTPNSNSGKMFRFGMFALEQFKGRLHEWPQYCSHIVQIPHLREKYSLLVDEIEGTM 979
BLAST of mRNA_H-elongata_contig5619.13062.1 vs. uniprot
Match: A0A7S2UP57_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UP57_9STRA) HSP 1 Score: 246 bits (628), Expect = 1.640e-67 Identity = 160/367 (43.60%), Postives = 217/367 (59.13%), Query Frame = 1
Query: 1 VLRIMRLVPE----CAPELLGSEDCAFAIAVASVAFGAEVSPMANPLPQPLPSNPLPSLDLDKWCAERLARKD--------REVFAASVLSFVQSHFPLARLRQLSQKQGDTSGEGLLPTCAMSLEASAILLKSLGAT--GLVSPAAEAL-------AKKNPAIQASAKQLAEAGKKMHPTLNSLLN-----------------PPEEIESMADSYFQRIYTAEQSIEEVIDMLERFKTSSDTREQEIFACMVHNLFDEYRFFHNYPEKELRITGILFGSLIQHQLVSSITLGIALRYVLEALRRPPGP-----DNAGKMFRFGMFALEQFKGRLGEWPQYCSHIVQIPHLVGNHPSLVEEIERSIQ 972
++ I+RL+P A + G++D F +AVA V ++ L L W +ER++ + R +FA +++S++ + A R G+ SG+G T +S+E ++ L+ L ++S A + + + + S K L +A H +L+SL++ ++IE MA+SYFQ+IYT+EQSI EVI+ML+RFK S + RE +IFACM+HNLFDEYRFF YPEKELRITGILFG LIQ QLVSSITLGIALRYVLEALR+PP P N+GKMFRFGMFALEQFK RL EWPQYCSHIVQIP+L + +LV EIE +++
Sbjct: 669 IISIVRLLPSPESVTAAIINGNKDFEFGLAVAFVMADNDM------------------LQLSAWLSERMSTMNSSGSTGNGRVIFAIAIVSYIGKMYASALSR------GNHSGKG---TPLVSIENISVCLQFLNGLDKNVLSQALPSSLSGGGDSSNRGMLLGESVKALTDACMSAHTSLSSLMSNSSSAPSSSRTPTPTSGSTDDIEEMANSYFQKIYTSEQSIGEVIEMLKRFKVSGNARENDIFACMIHNLFDEYRFFSKYPEKELRITGILFGQLIQQQLVSSITLGIALRYVLEALRKPPSPPGSTTSNSGKMFRFGMFALEQFKSRLHEWPQYCSHIVQIPYLREGYGALVNEIEEAME 1008 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5619.13062.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig5619.13062.1 >prot_H-elongata_contig5619.13062.1 ID=prot_H-elongata_contig5619.13062.1|Name=mRNA_H-elongata_contig5619.13062.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=497bp MRLVPECAPELLGSEDCAFAIAVASVAFGAEVSPMANPLPQPLPSNPLPSback to top mRNA from alignment at H-elongata_contig5619:656..3626+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig5619.13062.1 ID=mRNA_H-elongata_contig5619.13062.1|Name=mRNA_H-elongata_contig5619.13062.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2971bp|location=Sequence derived from alignment at H-elongata_contig5619:656..3626+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig5619:656..3626+ >mRNA_H-elongata_contig5619.13062.1 ID=mRNA_H-elongata_contig5619.13062.1|Name=mRNA_H-elongata_contig5619.13062.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2982bp|location=Sequence derived from alignment at H-elongata_contig5619:656..3626+ (Himanthalia elongata Himel1 dioecious)back to top |