mRNA_H-elongata_contig5619.13062.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5619.13062.1
Unique NamemRNA_H-elongata_contig5619.13062.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig5619.13062.1 vs. uniprot
Match: D8LMN3_ECTSI (CNOT1_TTP_bind domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMN3_ECTSI)

HSP 1 Score: 549 bits (1414), Expect = 7.320e-183
Identity = 285/330 (86.36%), Postives = 300/330 (90.91%), Query Frame = 1
Query:    1 VLRIMRLVPECAPELLGSEDCAFAIAVASVAFGAEVSPMANPLPQPLPSNPLPSLDLDKWCAERLARKDREVFAASVLSFVQSHFPLARLRQLSQKQGDTSGEGLLPTCAMSLEASAILLKSLGATGLVSPAAEALAKKNPAIQASAKQLAEAGKKMHPTLNSLLNPPEEIESMADSYFQRIYTAEQSIEEVIDMLERFKTSSDTREQEIFACMVHNLFDEYRFFHNYPEKELRITGILFGSLIQHQLVSSITLGIALRYVLEALRRPPGPDNAGKMFRFGMFALEQFKGRLGEWPQYCSHIVQIPHLVGNHPSLVEEIERSIQRQGGGG 990
            VLRIMRLVP+CA ELLG++DCAFA+AVASV FGAE+ P  N    P      P LDLDKW AERL RKDREVFAA VLSFVQ HFP AR+RQ +QK G+T GEG+LPTCAMSLEA+AILLK+LGATGLVSPAAEALAKKNP IQASAKQLAEAGKKMHPTLN LLNPPEEIESMA+SYFQRIYTAEQSIEEVI MLERFK+SSDTREQEIFACMVHNLFDEYRFFHNYPEKELRITGIL GSLIQHQLVSSITLGIALRYVLEALRR PGPD AGKMFRFGMFALEQFKGRLGEWPQYCSHIVQIPHLVGNHP+LVEEIERS+QRQGGGG
Sbjct:  657 VLRIMRLVPDCAAELLGADDCAFAVAVASVVFGAELPPTPN---APQXXXXXPPLDLDKWGAERLGRKDREVFAARVLSFVQLHFPTARMRQAAQKPGETPGEGMLPTCAMSLEAAAILLKALGATGLVSPAAEALAKKNPGIQASAKQLAEAGKKMHPTLNQLLNPPEEIESMANSYFQRIYTAEQSIEEVIAMLERFKSSSDTREQEIFACMVHNLFDEYRFFHNYPEKELRITGILLGSLIQHQLVSSITLGIALRYVLEALRRAPGPDPAGKMFRFGMFALEQFKGRLGEWPQYCSHIVQIPHLVGNHPALVEEIERSMQRQGGGG 983          
BLAST of mRNA_H-elongata_contig5619.13062.1 vs. uniprot
Match: A0A6H5JXN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN6_9PHAE)

HSP 1 Score: 544 bits (1401), Expect = 9.790e-171
Identity = 283/329 (86.02%), Postives = 297/329 (90.27%), Query Frame = 1
Query:    1 VLRIMRLVPECAPELLGSEDCAFAIAVASVAFGAEVSPMANPLPQPLPSNPLPSLDLDKWCAERLARKDREVFAASVLSFVQSHFPLARLRQLSQKQGDTSGEGLLPTCAMSLEASAILLKSLGATGLVSPAAEALAKKNPAIQASAKQLAEAGKKMHPTLNSLLNPPEEIESMADSYFQRIYTAEQSIEEVIDMLERFKTSSDTREQEIFACMVHNLFDEYRFFHNYPEKELRITGILFGSLIQHQLVSSITLGIALRYVLEALRRPPGPDNAGKMFRFGMFALEQFKGRLGEWPQYCSHIVQIPHLVGNHPSLVEEIERSIQRQGGG 987
            VLRIMRLVP+CA ELLG++DCAFA+AVASV FGAE+ P  N    P        LDLDKW AERL RKDREVFAA VLSFVQ HFP AR+RQ +QK G+T GEG+LPTCAMSLEA+AILLK LGATGLVSPAAEALAKKNP IQASAKQLAEAGKKMHPTLN LLNPPEEIESMA+SYFQRIYTAEQSIEEVI MLERFK+SSDTREQEIFACMVHNLFDEYRFFHNYPEKELRITGIL GSLIQHQLVSSITLGIALRYVLEALRR PGPD AGKMFRFGMFALEQFKGRLGEWPQYCSHIVQIPHLVGNHP+LVEEIERS+QRQGGG
Sbjct:  685 VLRIMRLVPDCAAELLGADDCAFAVAVASVVFGAELPPTPN---SPQXXXXXXXLDLDKWGAERLGRKDREVFAARVLSFVQLHFPTARMRQAAQKPGETPGEGMLPTCAMSLEAAAILLKMLGATGLVSPAAEALAKKNPGIQASAKQLAEAGKKMHPTLNQLLNPPEEIESMANSYFQRIYTAEQSIEEVIAMLERFKSSSDTREQEIFACMVHNLFDEYRFFHNYPEKELRITGILLGSLIQHQLVSSITLGIALRYVLEALRRAPGPDPAGKMFRFGMFALEQFKGRLGEWPQYCSHIVQIPHLVGNHPALVEEIERSMQRQGGG 1010          
BLAST of mRNA_H-elongata_contig5619.13062.1 vs. uniprot
Match: A0A835ZHM2_9STRA (CCR4-Not complex component, Not1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHM2_9STRA)

HSP 1 Score: 287 bits (735), Expect = 1.080e-81
Identity = 176/380 (46.32%), Postives = 218/380 (57.37%), Query Frame = 1
Query:    1 VLRIMRLVPECAPELLGSEDCAFAIAVASVAFGAEVSPMANPLPQPLPSNPLPSLDLDKWCAERLARKDREVFAASVLSFVQSHFPLARLRQLSQKQGDTSGEGLLPTCAMSLEASAILLKSLGATGLVSPAAEALAKKNPAIQASAKQLAEAGKKMHPTLNSLLN---------------------------------------------------------PPEEIESMADSYFQRIYTAEQSIEEVIDMLERFKTSSDTREQEIFACMVHNLFDEYRFFHNYPEKELRITGILFGSLIQHQLVSSITLGIALRYVLEALRRPPGPDNAGKMFRFGMFALEQFKGRLGEWPQYCSHIVQIPHLVGNHPSLVEEIERSI 969
            VLR+ R+VPE  P LLGS+D  FAI +A +A+GAE +          P+     +DL+ W +ERL R++ E FAA +LSF+ ++   A  R +SQ Q + +   +  +C + +EA A  L+++   GL  P A AL                  + MHP    L+                                                          P  +I  MA++YFQRIYT+EQSI EV++ML RF+ S D REQ+IFACMVHNLFDEYRFFH YPEKELRITG+LFG LIQ  LVSSITLGIALRYVLEALR+PPGP   GKMFRFGMFALEQFKGRLGEWPQYCSHI  I HL   HP LV E+ER++
Sbjct:  594 VLRVARVVPEALPALLGSDDAPFAICLACIAYGAERADA--------PARE--RIDLEAWASERL-RREGEPFAARLLSFLNTNVATALPRDVSQAQANAADGDVGISCMLCIEALAACLRAVA--GL--PGAAALGXXXXXXXXXXXXXXXXXR-MHPAFAQLMGAVATPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQPASDIMEMANAYFQRIYTSEQSIPEVLEMLRRFQASDDKREQDIFACMVHNLFDEYRFFHKYPEKELRITGVLFGMLIQQGLVSSITLGIALRYVLEALRKPPGPGAEGKMFRFGMFALEQFKGRLGEWPQYCSHIASIQHLAAQHPELVREMERAM 957          
BLAST of mRNA_H-elongata_contig5619.13062.1 vs. uniprot
Match: W7TUR4_9STRA (Ccr4-not transcription n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TUR4_9STRA)

HSP 1 Score: 281 bits (720), Expect = 1.060e-79
Identity = 168/336 (50.00%), Postives = 212/336 (63.10%), Query Frame = 1
Query:    1 VLRIMRLVPECAPELLGSEDCAFAIAVASVAFGAEVSPMANPLPQPLPSNPLPSLDLDKWCAERLARK-DREVFAASVLSFVQSHFPLARLRQLSQKQGDTSGEGLLPTCAMSLEASAILLKSLGAT-GLVSPAAEALAKKNPAIQASAKQLAEAGKKMHPT--------LNSLLNPPEEIESMADSYFQRIYTAEQSIEEVIDMLERFKTSSDTREQEIFACMVHNLFDEYRFFHNYPEKELRITGILFGSLIQHQLVSSITLGIALRYVLEALRRPPGPDNAGKMFRFGMFALEQFKGRLGEWPQYCSHIVQIPHLVGNHPSLVEEIERSIQRQ 978
            +L +M LVP    ++L S    F +A+A+ A   E                   L+L+K+ AE+L+   ++E FA   LSFV  H   ARLR  S   G+      +P   +S E+   LLK LG    L    ++   +   A++  +K+  E G                      + IE MA++YFQ+IYT+EQSI +VI+ML+RFK+S D +E EIFACM+ NLFDEYRFFH YPEKELRITGILFGSLIQHQLVSS+TLG+ALRYVLEALRRPPGP NAGK +RFGMFALEQF+GRL EWPQYCSH++QIPHL  NHP LV EIER++ RQ
Sbjct:  581 ILAVMLLVPSTQQDVLSSSCTEFVVALAAAAADKE------------------QLNLEKFIAEKLSSSTNKENFARGTLSFVHKHAGHARLR--SAVVGND-----VPPVLLSEESLVSLLKVLGQDPDLRQGGSQVAMEVKQALELYSKRFMEVGSANQGAGAAXXXXXXXXXXXXSDAIEEMANAYFQKIYTSEQSIPDVIEMLKRFKSSKDAKELEIFACMIRNLFDEYRFFHKYPEKELRITGILFGSLIQHQLVSSLTLGVALRYVLEALRRPPGPGNAGKWYRFGMFALEQFQGRLHEWPQYCSHLIQIPHLRQNHPDLVLEIERAMSRQ 891          
BLAST of mRNA_H-elongata_contig5619.13062.1 vs. uniprot
Match: A0A7S2G852_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G852_9STRA)

HSP 1 Score: 258 bits (660), Expect = 1.000e-77
Identity = 127/163 (77.91%), Postives = 142/163 (87.12%), Query Frame = 1
Query:  505 EEIESMADSYFQRIYTAEQSIEEVIDMLERFKTSSDTREQEIFACMVHNLFDEYRFFHNYPEKELRITGILFGSLIQHQLVSSITLGIALRYVLEALRRPPGPDNAGKMFRFGMFALEQFKGRLGEWPQYCSHIVQIPHLVGNHPSLVEEIERSIQRQGGGGG 993
            +EIE MA+SYFQ+IYT+EQSI EVIDML++FKTS + REQEIFACM+HNLFDEYRFFH YPEKELRITGILFG+LIQHQLVSSITLGIALRYVLEALR+ PG    GKMFRFGMFALEQFK RL EWPQYCSHIVQI HL   H  LV+EI+R+++   GGGG
Sbjct:  253 DEIEDMANSYFQKIYTSEQSIAEVIDMLKKFKTSPNQREQEIFACMIHNLFDEYRFFHKYPEKELRITGILFGTLIQHQLVSSITLGIALRYVLEALRKAPGSGANGKMFRFGMFALEQFKARLYEWPQYCSHIVQIDHLCQQHAELVDEIQRAMKSSKGGGG 415          
BLAST of mRNA_H-elongata_contig5619.13062.1 vs. uniprot
Match: A0A7S2RR73_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RR73_9STRA)

HSP 1 Score: 248 bits (632), Expect = 5.970e-77
Identity = 122/150 (81.33%), Postives = 136/150 (90.67%), Query Frame = 1
Query:  523 ADSYFQRIYTAEQSIEEVIDMLERFKTSSDTREQEIFACMVHNLFDEYRFFHNYPEKELRITGILFGSLIQHQLVSSITLGIALRYVLEALRRPPGPDNAGKMFRFGMFALEQFKGRLGEWPQYCSHIVQIPHLVGNHPSLVEEIERSIQ 972
            A+SYFQ+IYT+EQSI EVI+ML+RFKTSS+ REQEIFACM+HNLFDEYRFFH YPEKELRITGILFG+LIQHQLVSSITLGIALRYVLEALR+P     +GKMFRFGMFALEQFK RL EWPQYCSHIVQI +L  NHP LVEEI+R++Q
Sbjct:    1 ANSYFQKIYTSEQSIAEVIEMLKRFKTSSNQREQEIFACMIHNLFDEYRFFHKYPEKELRITGILFGTLIQHQLVSSITLGIALRYVLEALRKPHW--QSGKMFRFGMFALEQFKARLSEWPQYCSHIVQIDYLNANHPDLVEEIKRAMQ 148          
BLAST of mRNA_H-elongata_contig5619.13062.1 vs. uniprot
Match: A0A1Z5JVQ8_FISSO (CCR4-NOT transcription complex subunit 1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JVQ8_FISSO)

HSP 1 Score: 255 bits (651), Expect = 1.440e-70
Identity = 167/364 (45.88%), Postives = 216/364 (59.34%), Query Frame = 1
Query:    1 VLRIMRLVPECAPE----LLGSEDCAFAIAVASVAFGAEVSPMANPLPQPLPSNPLPSLDLDKWCAERLARKDREV-FAASVLSFVQSHFPLARLRQLSQKQGDTSGEGL-LPTCAMSLEASAILLKSLGATGLVSPAAEALAK--KNPAIQASAKQLAEAGKKMHPTLNSLL---NPP---------EEIESMADSYFQRIYTAEQSIEEVIDMLERFKTSSDTREQEIFACMVHNLFDEYRFFHNYPEKELRITGILFGSLIQHQLVSSITLGIALRYVLEALRRPPGPDNAGKMFRFGMFALEQFKGRLGEWPQYCSHIVQIPHLVGNHPSLVEEIE------------RSIQRQGGGGGT 996
            ++ I RL+P  A      L G++D  ++I++A V    +                   L L  W  E+L  K     FA S++S+++  +  A+ R      G   G  + L    +SL+    LL+SL A+ L  P   +L +      +  + K L +A    HP+L   L   NPP         E++E MA +YFQ+IYT+EQSI +V++ML+RFKTS +++E EIFACMVHNLF+EYRFF+ YPEKELRITGILFG+LIQ QLVSSITLGIALRYVLEALR+PP   + GKMF+FGMFALEQFKGRL EWPQYCSHIVQIPHL   +  LV EIE             S+  Q  GGGT
Sbjct:  510 IINIARLLPSPADAVASLLSGNKDAEYSISIAFVMSDNDF------------------LQLKPWLGEKLTSKGYAAPFAFSLVSYLRKTYAAAKPRV-----GGADGPLVSLENIVISLQ----LLESLEASVLAQPVVGSLDRVLATGTLGENVKSLMDACLTAHPSLRVALSGQNPPTPLAPLTSSEDVEDMATAYFQKIYTSEQSIGDVVEMLKRFKTSGNSKENEIFACMVHNLFNEYRFFNKYPEKELRITGILFGALIQEQLVSSITLGIALRYVLEALRKPPETTSTGKMFKFGMFALEQFKGRLHEWPQYCSHIVQIPHLKEKYAELVAEIESEMNKSQKRGSGNSVDSQSSGGGT 846          
BLAST of mRNA_H-elongata_contig5619.13062.1 vs. uniprot
Match: A0A7S4W626_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4W626_9STRA)

HSP 1 Score: 253 bits (647), Expect = 4.710e-70
Identity = 146/283 (51.59%), Postives = 194/283 (68.55%), Query Frame = 1
Query:  169 LDKWCAER--LARKDREVFAASVLSFVQSHFPLARLRQLSQKQGDTSGEGL--LPTCAMSLEASAILLKSLGATGLVSPAAEALAKKNPAIQA--SAKQLAEAGKKMHPTLNSLLNPP----EEIESMADSYFQRIYTAEQSIEEVIDMLERFKTSSDTREQEIFACMVHNLFDEYRFFHNYPEKELRITGILFGSLIQHQLVSSITLGIALRYVLEALRRPPGPD------NAGKMFRFGMFALEQFKGRLGEWPQYCSHIVQIPHLVGNHPSLVEEIERSI 969
            L +W +ER      +R VF  S++++      L+R    +  + +  G  L  +   A SL+    L  ++ +  + +PA+++    + ++    S K+L +A   +HP+LN+++       ++IE MA+SYFQ+IYT+EQSI EV++ML+RFK S + RE +IFACM+HNLFDEYRFF  YPEKELRITGILFG LIQHQLVSSITLGIALRYVLEALR+PP P       N+GKMFRFGMFALEQFKGRL EWPQYCSHIVQIPHL   +  LV+EIE ++
Sbjct:  436 LREWFSERRNATAVERNVFVLSLIAY------LSRTHTAALARNNDGGPPLVSIENIATSLQFLQGLDNAILSQQISNPASQSAENSSSSLTIGDSVKRLIDACVSVHPSLNNVIKQTSGNADDIEEMANSYFQKIYTSEQSIIEVVEMLKRFKISGNARENDIFACMIHNLFDEYRFFSKYPEKELRITGILFGMLIQHQLVSSITLGIALRYVLEALRKPPTPSVSTPNSNSGKMFRFGMFALEQFKGRLHEWPQYCSHIVQIPHLREKYSLLVDEIEGTM 712          
BLAST of mRNA_H-elongata_contig5619.13062.1 vs. uniprot
Match: A0A7S4RY41_9STRA (Hypothetical protein n=10 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RY41_9STRA)

HSP 1 Score: 253 bits (647), Expect = 5.000e-70
Identity = 146/283 (51.59%), Postives = 194/283 (68.55%), Query Frame = 1
Query:  169 LDKWCAER--LARKDREVFAASVLSFVQSHFPLARLRQLSQKQGDTSGEGL--LPTCAMSLEASAILLKSLGATGLVSPAAEALAKKNPAIQA--SAKQLAEAGKKMHPTLNSLLNPP----EEIESMADSYFQRIYTAEQSIEEVIDMLERFKTSSDTREQEIFACMVHNLFDEYRFFHNYPEKELRITGILFGSLIQHQLVSSITLGIALRYVLEALRRPPGPD------NAGKMFRFGMFALEQFKGRLGEWPQYCSHIVQIPHLVGNHPSLVEEIERSI 969
            L +W +ER      +R VF  S++++      L+R    +  + +  G  L  +   A SL+    L  ++ +  + +PA+++    + ++    S K+L +A   +HP+LN+++       ++IE MA+SYFQ+IYT+EQSI EV++ML+RFK S + RE +IFACM+HNLFDEYRFF  YPEKELRITGILFG LIQHQLVSSITLGIALRYVLEALR+PP P       N+GKMFRFGMFALEQFKGRL EWPQYCSHIVQIPHL   +  LV+EIE ++
Sbjct:  703 LREWFSERRNATAVERNVFVLSLIAY------LSRTHTAALARNNDGGPPLVSIENIATSLQFLQGLDNAILSQQISNPASQSAENSSSSLTIGDSVKRLIDACVSVHPSLNNVIKQTSGNADDIEEMANSYFQKIYTSEQSIIEVVEMLKRFKISGNARENDIFACMIHNLFDEYRFFSKYPEKELRITGILFGMLIQHQLVSSITLGIALRYVLEALRKPPTPSVSTPNSNSGKMFRFGMFALEQFKGRLHEWPQYCSHIVQIPHLREKYSLLVDEIEGTM 979          
BLAST of mRNA_H-elongata_contig5619.13062.1 vs. uniprot
Match: A0A7S2UP57_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UP57_9STRA)

HSP 1 Score: 246 bits (628), Expect = 1.640e-67
Identity = 160/367 (43.60%), Postives = 217/367 (59.13%), Query Frame = 1
Query:    1 VLRIMRLVPE----CAPELLGSEDCAFAIAVASVAFGAEVSPMANPLPQPLPSNPLPSLDLDKWCAERLARKD--------REVFAASVLSFVQSHFPLARLRQLSQKQGDTSGEGLLPTCAMSLEASAILLKSLGAT--GLVSPAAEAL-------AKKNPAIQASAKQLAEAGKKMHPTLNSLLN-----------------PPEEIESMADSYFQRIYTAEQSIEEVIDMLERFKTSSDTREQEIFACMVHNLFDEYRFFHNYPEKELRITGILFGSLIQHQLVSSITLGIALRYVLEALRRPPGP-----DNAGKMFRFGMFALEQFKGRLGEWPQYCSHIVQIPHLVGNHPSLVEEIERSIQ 972
            ++ I+RL+P      A  + G++D  F +AVA V    ++                  L L  W +ER++  +        R +FA +++S++   +  A  R      G+ SG+G   T  +S+E  ++ L+ L      ++S A  +        + +   +  S K L +A    H +L+SL++                   ++IE MA+SYFQ+IYT+EQSI EVI+ML+RFK S + RE +IFACM+HNLFDEYRFF  YPEKELRITGILFG LIQ QLVSSITLGIALRYVLEALR+PP P      N+GKMFRFGMFALEQFK RL EWPQYCSHIVQIP+L   + +LV EIE +++
Sbjct:  669 IISIVRLLPSPESVTAAIINGNKDFEFGLAVAFVMADNDM------------------LQLSAWLSERMSTMNSSGSTGNGRVIFAIAIVSYIGKMYASALSR------GNHSGKG---TPLVSIENISVCLQFLNGLDKNVLSQALPSSLSGGGDSSNRGMLLGESVKALTDACMSAHTSLSSLMSNSSSAPSSSRTPTPTSGSTDDIEEMANSYFQKIYTSEQSIGEVIEMLKRFKVSGNARENDIFACMIHNLFDEYRFFSKYPEKELRITGILFGQLIQQQLVSSITLGIALRYVLEALRKPPSPPGSTTSNSGKMFRFGMFALEQFKSRLHEWPQYCSHIVQIPYLREGYGALVNEIEEAME 1008          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5619.13062.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMN3_ECTSI7.320e-18386.36CNOT1_TTP_bind domain-containing protein (Fragment... [more]
A0A6H5JXN6_9PHAE9.790e-17186.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZHM2_9STRA1.080e-8146.32CCR4-Not complex component, Not1-domain-containing... [more]
W7TUR4_9STRA1.060e-7950.00Ccr4-not transcription n=2 Tax=Monodopsidaceae Tax... [more]
A0A7S2G852_9STRA1.000e-7777.91Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2RR73_9STRA5.970e-7781.33Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A1Z5JVQ8_FISSO1.440e-7045.88CCR4-NOT transcription complex subunit 1 n=2 Tax=F... [more]
A0A7S4W626_9STRA4.710e-7051.59Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4RY41_9STRA5.000e-7051.59Hypothetical protein n=10 Tax=Ditylum brightwellii... [more]
A0A7S2UP57_9STRA1.640e-6743.60Hypothetical protein n=1 Tax=Attheya septentrional... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5619contigH-elongata_contig5619:656..3626 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score547.4
Seed ortholog evalue7.1e-153
Seed eggNOG ortholog2880.D8LMN3
KEGG koko:K12604
KEGG Pathwayko03018,map03018
GOsGO:0000288,GO:0000289,GO:0000932,GO:0000956,GO:0003674,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006351,GO:0006354,GO:0006401,GO:0006402,GO:0006417,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0016070,GO:0016071,GO:0017148,GO:0018130,GO:0019222,GO:0019438,GO:0019439,GO:0030014,GO:0030015,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032774,GO:0032947,GO:0032991,GO:0034248,GO:0034249,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0035770,GO:0036464,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576,GO:1990904,GO:2000112,GO:2000113
EggNOG free text desc.nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
EggNOG OGsCOG5103@1,KOG1831@2759
COG Functional cat.DK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019
Hectar predicted targeting categoryother localisation
Exons6
Model size1503
Cds size1491
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930915.0030475-UTR-H-elongata_contig5619:655..6671622930915.0030475-UTR-H-elongata_contig5619:655..667Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5619 656..667 +
1691679623.0180755-UTR-H-elongata_contig5619:655..6671691679623.0180755-UTR-H-elongata_contig5619:655..667Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5619 656..667 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930915.021634-CDS-H-elongata_contig5619:667..9011622930915.021634-CDS-H-elongata_contig5619:667..901Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5619 668..901 +
1691679623.030338-CDS-H-elongata_contig5619:667..9011691679623.030338-CDS-H-elongata_contig5619:667..901Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5619 668..901 +
1622930915.035956-CDS-H-elongata_contig5619:1386..16291622930915.035956-CDS-H-elongata_contig5619:1386..1629Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5619 1387..1629 +
1691679623.0402634-CDS-H-elongata_contig5619:1386..16291691679623.0402634-CDS-H-elongata_contig5619:1386..1629Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5619 1387..1629 +
1622930915.0574336-CDS-H-elongata_contig5619:1968..20521622930915.0574336-CDS-H-elongata_contig5619:1968..2052Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5619 1969..2052 +
1691679623.0498934-CDS-H-elongata_contig5619:1968..20521691679623.0498934-CDS-H-elongata_contig5619:1968..2052Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5619 1969..2052 +
1622930915.0786655-CDS-H-elongata_contig5619:2432..28651622930915.0786655-CDS-H-elongata_contig5619:2432..2865Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5619 2433..2865 +
1691679623.0619054-CDS-H-elongata_contig5619:2432..28651691679623.0619054-CDS-H-elongata_contig5619:2432..2865Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5619 2433..2865 +
1622930915.0930822-CDS-H-elongata_contig5619:2997..33001622930915.0930822-CDS-H-elongata_contig5619:2997..3300Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5619 2998..3300 +
1691679623.070665-CDS-H-elongata_contig5619:2997..33001691679623.070665-CDS-H-elongata_contig5619:2997..3300Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5619 2998..3300 +
1622930915.1111696-CDS-H-elongata_contig5619:3432..36261622930915.1111696-CDS-H-elongata_contig5619:3432..3626Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5619 3433..3626 +
1691679623.080217-CDS-H-elongata_contig5619:3432..36261691679623.080217-CDS-H-elongata_contig5619:3432..3626Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5619 3433..3626 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5619.13062.1prot_H-elongata_contig5619.13062.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5619 668..3626 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5619.13062.1

>prot_H-elongata_contig5619.13062.1 ID=prot_H-elongata_contig5619.13062.1|Name=mRNA_H-elongata_contig5619.13062.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=497bp
MRLVPECAPELLGSEDCAFAIAVASVAFGAEVSPMANPLPQPLPSNPLPS
LDLDKWCAERLARKDREVFAASVLSFVQSHFPLARLRQLSQKQGDTSGEG
LLPTCAMSLEASAILLKSLGATGLVSPAAEALAKKNPAIQASAKQLAEAG
KKMHPTLNSLLNPPEEIESMADSYFQRIYTAEQSIEEVIDMLERFKTSSD
TREQEIFACMVHNLFDEYRFFHNYPEKELRITGILFGSLIQHQLVSSITL
GIALRYVLEALRRPPGPDNAGKMFRFGMFALEQFKGRLGEWPQYCSHIVQ
IPHLVGNHPSLVEEIERSIQRQGGGGGTGAVAGAPSGPHGSVSVSEASSL
GGQQQQQTHRQQQLHQQHQQPLHQQAQQQHQLQQQHQQQQQQQQQQQQQQ
QQQQQQQQQQQQQQQQQQQQQQQQQHQQQQQQRYGGRAQSVDLGQQQHQH
QQSLSQQQQPQTRQQQQQQSRQDQQPQQLPQQSQPQQQQQPQTRHQQ
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mRNA from alignment at H-elongata_contig5619:656..3626+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5619.13062.1 ID=mRNA_H-elongata_contig5619.13062.1|Name=mRNA_H-elongata_contig5619.13062.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2971bp|location=Sequence derived from alignment at H-elongata_contig5619:656..3626+ (Himanthalia elongata Himel1 dioecious)
GTGCTCCGCATCATGCGGCTAGTGCCCGAGTGCGCCCCCGAGCTCCTCGG GTCGGAGGATTGCGCTTTCGCGATCGCAGTAGCAAGCGTCGCTTTCGGGG CGGAAGTATCTCCGATGGCGAACCCCCTTCCGCAGCCTCTCCCATCCAAC CCCCTGCCGTCCCTTGATCTAGACAAATGGTGCGCCGAGCGACTTGCGAG GAAGGATCGTGAGGTGTTTGCCGCAAGCGTTCTTTCCTTCGTGCAGGTAA TTTTGGTGGACGATGTTCGCGTCGTGTTCATTGTGTGCCGTTTTTCTCTG GAAATGTTTTCATCAGCGTGTTTGGTGTGCTCTGGTCTTTAGTAATATAC GTAGTCCGTAAACGAATGTTTTTAAAATCTTATATCCGGGGGGAGAGTAA CTTGCTCTTTGCCGTTTGAAACAATAAAAATATGCTGCACTTGTTGCGTT CCTTACCAAACCGACGTGACTTGCTCTCAAGAACTCTTTCTCTTTCGCGG AAGAAGGCGACCACTGTCCTCAATACCTCTGGTAACCCCCCCCCCCCTCT ATACTATGTTGTAGTGTGCTATACTGTACCACACTATAATGTAGTGTTCT ATAGTGTACTAAAGTGTACTACTGTATAGGCACAAGCGAAGCAATATTTA TAGAAATATGAAAATAGTTTTATCACAATTTTTGGTGATGCGTACTAGCC CCCCTCTCCCCTTCCTCTCTCTCCCCCGCAGTCGCACTTTCCCTTGGCGC GGCTACGGCAGCTATCTCAGAAACAGGGTGACACCTCCGGCGAGGGCTTG TTGCCAACGTGCGCCATGTCCCTAGAGGCAAGCGCGATCTTGTTGAAGTC TCTCGGGGCGACGGGGCTTGTCTCTCCCGCCGCCGAGGCATTGGCGAAGA AGAATCCCGCGATACAGGCGTCGGCGAAGCAGCTGGCGGAGGCTGGCAAG AAGATGCACCCAACGCTAAACTCGGTGAGTCATGCTGGTGGATGCATCTG TGTGGGAGTGTGTGTGTACTTATTAAATTGCACATAACCGCGCAGTTTGG CGCTGTCATGCTAGTCCTTCAAGGCTACTCTCGCATTTGTGTGTGTGTGT GTGTGTCTTTGTTTTAGTAGTGTTTCTTACATGTGGTCTGACGGAAGTGT TGGTTTCAATCGTCGGAAAAGATGGTAGGGTGCGGATCGATGCACTTTTT GTTGGGTAATTCGTCTCGGTTTATAAAGAGGTGGCGGCTTGTTTTTCGCA TGCAAAGCCGAGCAATGCAAAGTCAGACGAACTCGTTTTTTTTTTGAATC CCATGTTCTGCAGCTACTCAATCCGCCCGAAGAAATCGAGTCGATGGCCG ACAGCTACTTTCAGCGCATCTACACAGCCGAGCAGTCAATCGAAGAGGTT TGTGCGGGTCAGTCAGAGATCTCGGACTGAAAATCGCCCCGGAACGCATG ACGGGTGGTATGCATTGTTTCGTTATTACTATTTTTTATTTGGTGCGCGC AGACCGGGGTCTCGTTGTGTTTTCGGCGCATGCTACAAATTTTAGTGTTG GGAGGCCTAGGTACAATCGTTGATATGATTGGAGTGTAGTCATAACATAT AGTAGAGTGCCTCCTGCTCATGGTCAGCTGAACAGAGAAAAACAATTCCC CCCCCTGTTGTGGATATAGCTAATAAGGAGAGAGGAGGAGAGGGTACTTG TGTTTCAAGCTGTGCTGTACCCACCTTTGGATTCCTTTTTATTTTTGTTT TGCGCGTGGTTTTTGACTGCTATGAAGGTAATCGACATGCTGGAGCGGTT CAAGACATCGTCCGACACCCGCGAGCAGGAAATATTCGCGTGCATGGTGC ACAACCTCTTCGACGAGTACCGCTTCTTCCACAACTACCCGGAGAAGGAG CTGCGAATCACGGGCATCCTCTTCGGCTCACTCATCCAGCACCAGCTCGT AAGTTCCATCACGCTAGGGATCGCGCTCCGATACGTCCTGGAGGCCCTGC GCAGACCCCCGGGGCCGGACAACGCGGGAAAGATGTTCCGGTTCGGGATG TTCGCACTCGAGCAGTTTAAGGGCCGCCTGGGAGAGTGGCCCCAGTACTG CAGCCACATCGTGCAGATCCCTCACCTCGTGGGGAACCATCCCTCCCTCG TGGAGGAGATCGAAAGGTCTATACAGAGGCAGGGAGGCGGTGGGGGGACC GGGGCTGTCGGTGGGGGAGTTGGGGGTGGTGCGGGTGGAGGGGAGCGTGG ACCCGTGCTCCTTGGTCCGATCCGTCCCCCGCCAGCGAAGGAACAGTCTC AGCTCCTGGCAGCAAGGTCGACGAGTGCGGGGGTCGAGAGAGCTGGAGCG CCCTCCGGTCCGCATGGGTCTGTTTCTGTATCGGAGGCATCCTCGCTTGG TGGACAGCAGCAACAACAAACGCATCGGCAGCAGCAGCTACATCAGCAGC ATCAACAGCCATTACATCAGCAAGCACAGCAGCAGCATCAGCTTCAGCAG CAACATCAGCAGCAACAACAGCAGCAGCAGCAGCAACAGCAGCAGCAGCA GCAGCAACAACAACAGCAGCAACAACAACAACAGCAGCAGCAGCAGCAAC AACAGCAGCAGCAACAGCAGCAACATCAACAGCAACAGCAACAGCGTATG CCCGTAGGTCAGAGTGTGCTGGACCCTGCTCTTGTTAACATAACGTCGGC TGCTCGGAGCCCTGAAATGAGGCATAGCCTAGTTGGAGGAGGCCAGCAGC TGTCGGGTCAGGGTGTTCCTGGAATAGGGTACGGGGGAAGAGCTCAAAGT GTTGATCTTGGACAGCAGCAGCATCAACATCAACAGTCGTTGTCTCAGCA GCAACAGCCTCAGACTCGGCAGCAGCAGCAACAACAATCTCGGCAAGACC AACAGCCTCAGCAGCTGCCACAACAGTCTCAGCCTCAGCAGCAGCAACAG CCTCAGACTCGACACCAACAG
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Coding sequence (CDS) from alignment at H-elongata_contig5619:656..3626+

>mRNA_H-elongata_contig5619.13062.1 ID=mRNA_H-elongata_contig5619.13062.1|Name=mRNA_H-elongata_contig5619.13062.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2982bp|location=Sequence derived from alignment at H-elongata_contig5619:656..3626+ (Himanthalia elongata Himel1 dioecious)
ATGCGGCTAGTGCCCGAGTGCGCCCCCGAGCTCCTCGGGTCGGAGGATTG
CGCTTTCGCGATCGCAGTAGCAAGCGTCGCTTTCGGGGCGGAAGTATCTC
CGATGGCGAACCCCCTTCCGCAGCCTCTCCCATCCAACCCCCTGCCGTCC
CTTGATCTAGACAAATGGTGCGCCGAGCGACTTGCGAGGAAGGATCGTGA
GGTGTTTGCCGCAAGCGTTCTTTCCTTCGTGCAGATGCGGCTAGTGCCCG
AGTGCGCCCCCGAGCTCCTCGGGTCGGAGGATTGCGCTTTCGCGATCGCA
GTAGCAAGCGTCGCTTTCGGGGCGGAAGTATCTCCGATGGCGAACCCCCT
TCCGCAGCCTCTCCCATCCAACCCCCTGCCGTCCCTTGATCTAGACAAAT
GGTGCGCCGAGCGACTTGCGAGGAAGGATCGTGAGGTGTTTGCCGCAAGC
GTTCTTTCCTTCGTGCAGTCGCACTTTCCCTTGGCGCGGCTACGGCAGCT
ATCTCAGAAACAGGGTGACACCTCCGGCGAGGGCTTGTTGCCAACGTGCG
CCATGTCCCTAGAGGCAAGCGCGATCTTGTTGAAGTCTCTCGGGGCGACG
GGGCTTGTCTCTCCCGCCGCCGAGGCATTGGCGAAGAAGAATCCCGCGAT
ACAGGCGTCGGCGAAGCAGCTGGCGGAGGCTGGCAAGAAGATGCACCCAA
CGCTAAACTCGTCGCACTTTCCCTTGGCGCGGCTACGGCAGCTATCTCAG
AAACAGGGTGACACCTCCGGCGAGGGCTTGTTGCCAACGTGCGCCATGTC
CCTAGAGGCAAGCGCGATCTTGTTGAAGTCTCTCGGGGCGACGGGGCTTG
TCTCTCCCGCCGCCGAGGCATTGGCGAAGAAGAATCCCGCGATACAGGCG
TCGGCGAAGCAGCTGGCGGAGGCTGGCAAGAAGATGCACCCAACGCTAAA
CTCGCTACTCAATCCGCCCGAAGAAATCGAGTCGATGGCCGACAGCTACT
TTCAGCGCATCTACACAGCCGAGCAGTCAATCGAAGAGCTACTCAATCCG
CCCGAAGAAATCGAGTCGATGGCCGACAGCTACTTTCAGCGCATCTACAC
AGCCGAGCAGTCAATCGAAGAGGTAATCGACATGCTGGAGCGGTTCAAGA
CATCGTCCGACACCCGCGAGCAGGAAATATTCGCGTGCATGGTGCACAAC
CTCTTCGACGAGTACCGCTTCTTCCACAACTACCCGGAGAAGGAGCTGCG
AATCACGGGCATCCTCTTCGGCTCACTCATCCAGCACCAGCTCGTAAGTT
CCATCACGCTAGGGATCGCGCTCCGATACGTCCTGGAGGCCCTGCGCAGA
CCCCCGGGGCCGGACAACGCGGGAAAGATGTTCCGGTTCGGGATGTTCGC
ACTCGAGCAGTTTAAGGGCCGCCTGGGAGAGTGGCCCCAGTACTGCAGCC
ACATCGTGCAGATCCCTCACCTCGTGGGGAACCATCCCTCCCTCGTGGAG
GAGATCGAAAGGTCTATACAGAGGCAGGGAGGCGGTGGGGGGACCGGGGC
TGTCGGTAATCGACATGCTGGAGCGGTTCAAGACATCGTCCGACACCCGC
GAGCAGGAAATATTCGCGTGCATGGTGCACAACCTCTTCGACGAGTACCG
CTTCTTCCACAACTACCCGGAGAAGGAGCTGCGAATCACGGGCATCCTCT
TCGGCTCACTCATCCAGCACCAGCTCGTAAGTTCCATCACGCTAGGGATC
GCGCTCCGATACGTCCTGGAGGCCCTGCGCAGACCCCCGGGGCCGGACAA
CGCGGGAAAGATGTTCCGGTTCGGGATGTTCGCACTCGAGCAGTTTAAGG
GCCGCCTGGGAGAGTGGCCCCAGTACTGCAGCCACATCGTGCAGATCCCT
CACCTCGTGGGGAACCATCCCTCCCTCGTGGAGGAGATCGAAAGGTCTAT
ACAGAGGCAGGGAGGCGGTGGGGGGACCGGGGCTGTCGCTGGAGCGCCCT
CCGGTCCGCATGGGTCTGTTTCTGTATCGGAGGCATCCTCGCTTGGTGGA
CAGCAGCAACAACAAACGCATCGGCAGCAGCAGCTACATCAGCAGCATCA
ACAGCCATTACATCAGCAAGCACAGCAGCAGCATCAGCTTCAGCAGCAAC
ATCAGCAGCAACAACAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAG
CAACAACAACAGCAGCAACAACAACAACAGCAGCAGCAGCAGCAACAACA
GCAGCAGCAACAGCAGCAACATCAACAGCAACAGCAACAGCCTGGAGCGC
CCTCCGGTCCGCATGGGTCTGTTTCTGTATCGGAGGCATCCTCGCTTGGT
GGACAGCAGCAACAACAAACGCATCGGCAGCAGCAGCTACATCAGCAGCA
TCAACAGCCATTACATCAGCAAGCACAGCAGCAGCATCAGCTTCAGCAGC
AACATCAGCAGCAACAACAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAG
CAGCAACAACAACAGCAGCAACAACAACAACAGCAGCAGCAGCAGCAACA
ACAGCAGCAGCAACAGCAGCAACATCAACAGCAACAGCAACAGCGGTACG
GGGGAAGAGCTCAAAGTGTTGATCTTGGACAGCAGCAGCATCAACATCAA
CAGTCGTTGTCTCAGCAGCAACAGCCTCAGACTCGGCAGCAGCAGCAACA
ACAATCTCGGCAAGACCAACAGCCTCAGCAGCTGCCACAACAGTCTCAGC
CTCAGCAGCAGCAACAGCCTCAGACTCGACACCAACAGGGTACGGGGGAA
GAGCTCAAAGTGTTGATCTTGGACAGCAGCAGCATCAACATCAACAGTCG
TTGTCTCAGCAGCAACAGCCTCAGACTCGGCAGCAGCAGCAACAACAATC
TCGGCAAGACCAACAGCCTCAGCAGCTGCCACAACAGTCTCAGCCTCAGC
AGCAGCAACAGCCTCAGACTCGACACCAACAG
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