mRNA_H-elongata_contig56015.13033.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig56015.13033.1
Unique NamemRNA_H-elongata_contig56015.13033.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig56015.13033.1 vs. uniprot
Match: D7G5S7_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5S7_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 1.170e-19
Identity = 42/65 (64.62%), Postives = 54/65 (83.08%), Query Frame = 1
Query:    4 NINERGMWGNTPLLVATQYGHANVALALLKCGADARAENERRATALHYSCAEGVIDVCRALLDNG 198
            +++ERGMWGNTPL+VATQY H ++ALAL+  GA+   ENER+ATALH+SCAEG + V  ALL+NG
Sbjct:  160 DLDERGMWGNTPLIVATQYAHPDIALALIAGGANVTLENERQATALHFSCAEGSVGVVSALLNNG 224          
BLAST of mRNA_H-elongata_contig56015.13033.1 vs. uniprot
Match: A0A6H5JYM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYM2_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 4.060e-19
Identity = 41/65 (63.08%), Postives = 54/65 (83.08%), Query Frame = 1
Query:    4 NINERGMWGNTPLLVATQYGHANVALALLKCGADARAENERRATALHYSCAEGVIDVCRALLDNG 198
            +++ERGMWGNTPL+VATQY H ++ALAL+  GA+   ENER+ATALH+SCAEG + V  ALL++G
Sbjct:  160 DLDERGMWGNTPLIVATQYAHPDIALALIAGGANVTLENERQATALHFSCAEGSVGVASALLNSG 224          
BLAST of mRNA_H-elongata_contig56015.13033.1 vs. uniprot
Match: A0A813HQJ1_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HQJ1_POLGL)

HSP 1 Score: 65.9 bits (159), Expect = 7.980e-12
Identity = 32/62 (51.61%), Postives = 39/62 (62.90%), Query Frame = 1
Query:    7 INERGMWGNTPLLVATQYGHANVALALLKCGADARAENERRATALHYSCAEGVIDVCRALLD 192
            + + GMW NTPLL A  YGHA  AL L+  GA+  A NE  AT LHY+  EG + V  ALL+
Sbjct:  100 LEDLGMWDNTPLLAACNYGHAEAALRLIAAGANVCARNEHNATPLHYAAVEGSLPVVAALLE 161          
BLAST of mRNA_H-elongata_contig56015.13033.1 vs. uniprot
Match: W4GX04_9STRA (Uncharacterized protein n=9 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GX04_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 8.120e-9
Identity = 31/61 (50.82%), Postives = 41/61 (67.21%), Query Frame = 1
Query:    7 INERGMWGNTPLLVATQYGHANVALALLKCGADARAENERRATALHYSCAEGVIDVCRALL 189
            +N RGMW +TPLLVA QY H++VAL LL  GADA   NE+  +A+  +  EG+ +V   LL
Sbjct:  104 LNCRGMWDSTPLLVACQYAHSDVALHLLSVGADATLVNEKHVSAVLLASLEGLTEVLTCLL 164          
BLAST of mRNA_H-elongata_contig56015.13033.1 vs. uniprot
Match: A0A7S2H0N5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2H0N5_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 9.830e-8
Identity = 30/61 (49.18%), Postives = 41/61 (67.21%), Query Frame = 1
Query:    7 INERGMWGNTPLLVATQYGHANVALALLKCGADARAENERRATALHYSCAEGVIDVCRALL 189
            IN R   G TPLL+A QYGHA++A  L+K GAD  A + +R +ALH++  +G + VC  LL
Sbjct:  297 INARDKSGCTPLLIAAQYGHADLAAFLIKRGADLNAVDFQRDSALHWAAYKGSVPVCGLLL 357          
BLAST of mRNA_H-elongata_contig56015.13033.1 vs. uniprot
Match: B8BZT9_THAPS (Palmitoyltransferase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BZT9_THAPS)

HSP 1 Score: 50.4 bits (119), Expect = 1.490e-5
Identity = 27/64 (42.19%), Postives = 40/64 (62.50%), Query Frame = 1
Query:    1 VNINERGMWGNTPLLVATQYGHANVALALLKCGADARAENERRATALHYSCAEGVIDVCRALLD 192
            V I+ +   G TPLL+A QYGH ++A  L++ GADA A +  R TALH++  +G ++     LD
Sbjct:  334 VGIDAKDSSGCTPLLIAAQYGHPDLAAFLIQRGADATAVDSSRDTALHWAAYKGSVEGVEGHLD 397          
BLAST of mRNA_H-elongata_contig56015.13033.1 vs. uniprot
Match: A0A1F7ZV41_9EURO (Protein kinase domain-containing protein n=1 Tax=Aspergillus bombycis TaxID=109264 RepID=A0A1F7ZV41_9EURO)

HSP 1 Score: 49.7 bits (117), Expect = 2.810e-5
Identity = 29/69 (42.03%), Postives = 43/69 (62.32%), Query Frame = 1
Query:    1 VNINERGMWGNTPLLVATQYGHANVALALLKCGADARAENERRATALHYSCA--EGVID-VCRALLDNG 198
            +NINE+G+ G TPLL+A + GH +   ALL  GADA+  ++   T LH+     E  +D V +AL+ +G
Sbjct:  533 LNINEKGLLGETPLLLACRNGHLSTVQALLDLGADAKLSDDYGTTPLHWLSRFHESEVDIVVKALIQHG 601          
BLAST of mRNA_H-elongata_contig56015.13033.1 vs. uniprot
Match: UPI001EB08346 (serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A-like n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EB08346)

HSP 1 Score: 49.3 bits (116), Expect = 3.810e-5
Identity = 25/62 (40.32%), Postives = 37/62 (59.68%), Query Frame = 1
Query:    4 NINERGMWGNTPLLVATQYGHANVALALLKCGADARAENERRATALHYSCAEGVIDVCRALL 189
            NIN RG +G TPL++A + GH  V   L++ GAD    ++ R   LH +C  G ID+ + +L
Sbjct:  255 NINSRGQYGRTPLMMAAKKGHRQVFDLLVREGADVSLVDDNRDNILHVACLGGHIDMVKYVL 316          
BLAST of mRNA_H-elongata_contig56015.13033.1 vs. uniprot
Match: UPI001EE54BD6 (serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A-like n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE54BD6)

HSP 1 Score: 48.5 bits (114), Expect = 7.210e-5
Identity = 25/62 (40.32%), Postives = 37/62 (59.68%), Query Frame = 1
Query:    4 NINERGMWGNTPLLVATQYGHANVALALLKCGADARAENERRATALHYSCAEGVIDVCRALL 189
            NIN RG +G TP++VA + GH  V   L+K GAD    ++ R   LH +C  G +D+ + +L
Sbjct: 1318 NINSRGQYGRTPVMVAAKRGHREVFDLLVKEGADVSLVDDDRDYLLHVACIGGHVDMVKYVL 1379          
BLAST of mRNA_H-elongata_contig56015.13033.1 vs. uniprot
Match: UPI00201EC82C (uncharacterized protein LOC124152553 n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI00201EC82C)

HSP 1 Score: 48.5 bits (114), Expect = 7.240e-5
Identity = 25/62 (40.32%), Postives = 37/62 (59.68%), Query Frame = 1
Query:    4 NINERGMWGNTPLLVATQYGHANVALALLKCGADARAENERRATALHYSCAEGVIDVCRALL 189
            +IN RG +G TPL+VA + GH  V   L++ GAD    ++ R   LH +C  G +DV + +L
Sbjct: 1597 DINSRGRYGRTPLMVAAENGHRQVFDLLVREGADVTLVDDGRNNILHVACLGGHVDVVKYVL 1658          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56015.13033.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7G5S7_ECTSI1.170e-1964.62Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
A0A6H5JYM2_9PHAE4.060e-1963.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A813HQJ1_POLGL7.980e-1251.61Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]
W4GX04_9STRA8.120e-950.82Uncharacterized protein n=9 Tax=Aphanomyces astaci... [more]
A0A7S2H0N5_9STRA9.830e-849.18Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
B8BZT9_THAPS1.490e-542.19Palmitoyltransferase n=1 Tax=Thalassiosira pseudon... [more]
A0A1F7ZV41_9EURO2.810e-542.03Protein kinase domain-containing protein n=1 Tax=A... [more]
UPI001EB083463.810e-540.32serine/threonine-protein phosphatase 6 regulatory ... [more]
UPI001EE54BD67.210e-540.32serine/threonine-protein phosphatase 6 regulatory ... [more]
UPI00201EC82C7.240e-540.32uncharacterized protein LOC124152553 n=1 Tax=Halio... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56015contigH-elongata_contig56015:1544..1741 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.1
Seed ortholog evalue1.2e-14
Seed eggNOG ortholog2880.D7G5S7
KEGG koko:K16726
EggNOG free text desc.positive regulation of MDA-5 signaling pathway
EggNOG OGsKOG4369@1,KOG4369@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-12_008950.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size198
Cds size177
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930911.7820525-UTR-H-elongata_contig56015:1543..15641622930911.7820525-UTR-H-elongata_contig56015:1543..1564Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56015 1544..1564 +
1691679621.6396613-UTR-H-elongata_contig56015:1543..15641691679621.6396613-UTR-H-elongata_contig56015:1543..1564Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56015 1544..1564 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930911.8043063-CDS-H-elongata_contig56015:1564..17411622930911.8043063-CDS-H-elongata_contig56015:1564..1741Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56015 1565..1741 +
1691679621.6498227-CDS-H-elongata_contig56015:1564..17411691679621.6498227-CDS-H-elongata_contig56015:1564..1741Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56015 1565..1741 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56015.13033.1prot_H-elongata_contig56015.13033.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig56015 1565..1741 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig56015.13033.1

>prot_H-elongata_contig56015.13033.1 ID=prot_H-elongata_contig56015.13033.1|Name=mRNA_H-elongata_contig56015.13033.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=59bp
MWGNTPLLVATQYGHANVALALLKCGADARAENERRATALHYSCAEGVID
VCRALLDNG
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mRNA from alignment at H-elongata_contig56015:1544..1741+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig56015.13033.1 ID=mRNA_H-elongata_contig56015.13033.1|Name=mRNA_H-elongata_contig56015.13033.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=198bp|location=Sequence derived from alignment at H-elongata_contig56015:1544..1741+ (Himanthalia elongata Himel1 dioecious)
GTGAACATCAACGAGCGTGGTATGTGGGGCAACACACCTCTCCTTGTAGC GACGCAATATGGACATGCCAATGTTGCCCTGGCCTTGCTAAAATGCGGAG CAGACGCTAGGGCAGAGAACGAGCGACGAGCAACCGCTCTTCATTATAGT TGCGCGGAAGGTGTTATTGATGTTTGCCGAGCACTCCTTGACAATGGT
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Coding sequence (CDS) from alignment at H-elongata_contig56015:1544..1741+

>mRNA_H-elongata_contig56015.13033.1 ID=mRNA_H-elongata_contig56015.13033.1|Name=mRNA_H-elongata_contig56015.13033.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=354bp|location=Sequence derived from alignment at H-elongata_contig56015:1544..1741+ (Himanthalia elongata Himel1 dioecious)
ATGTGGGGCAACACACCTCTCCTTGTAGCGACGCAATATGGACATGCCAA
TGTTGCCCTGGCCTTGCTAAAATGCGGAGCAGACGCTAGGGCAGAGAACG
AGCGACGAGCAACCGCTCTTCATTATAGTTGCGCGGAAGGTGTTATTGAT
GTTTGCCGAGCACTCCTTGACAATGGTATGTGGGGCAACACACCTCTCCT
TGTAGCGACGCAATATGGACATGCCAATGTTGCCCTGGCCTTGCTAAAAT
GCGGAGCAGACGCTAGGGCAGAGAACGAGCGACGAGCAACCGCTCTTCAT
TATAGTTGCGCGGAAGGTGTTATTGATGTTTGCCGAGCACTCCTTGACAA
TGGT
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