mRNA_H-elongata_contig198939.5581.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig198939.5581.1 vs. uniprot
Match: A0A6H5KVR5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR5_9PHAE) HSP 1 Score: 143 bits (361), Expect = 1.620e-37 Identity = 94/265 (35.47%), Postives = 137/265 (51.70%), Query Frame = 1
Query: 4 KFHEVLGHPAEQITRNTARMAGAQLSGIWRSCVHCSESRVRRYAVPKSTENRVDRRAERLFIDLSGPFHETSLGGNRFVMLCIDDFTRFKMVRFIKHKSDATNALRDTINDYFAPEGLK--IGVIRTDGGGE*HG-QFLSFLSELGIKR*FTPPYTPQYNDIVERALGLLRDKTVA--LLRGVLEG-----KSNRLWAEAMA----------------GTSSYELWYGRRPTFDNIPPFGTVEYLRRSEPGHKLAPRGASCIMLG 720
+FH + H E + R TA+ G +L G +C CS S+ R + + T+ R D++ R+F DL G S+GG + ++ DDFTR + F+++KSDA +A R + A G+ + ++R+D GG+ G F S +EL IK+ FTP Y+PQYN + ER LGL+ + +A + VL G K+++LWAEAM S YE+WYG P PF Y R P KL P+G SC +G
Sbjct: 36 EFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFADLGGRKDIASVGGKHYPIIVKDDFTRHTWMYFLRNKSDAGSAFRTFLASVRA-NGVPSFVEIVRSDNGGKFFGGDFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFSKPAYCRWQRPS-KLLPKGESCFYVG 297
BLAST of mRNA_H-elongata_contig198939.5581.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE) HSP 1 Score: 148 bits (374), Expect = 3.440e-37 Identity = 95/265 (35.85%), Postives = 139/265 (52.45%), Query Frame = 1
Query: 4 KFHEVLGHPAEQITRNTARMAGAQLSGIWRSCVHCSESRVRRYAVPKSTENRVDRRAERLFIDLSGPFHETSLGGNRFVMLCIDDFTRFKMVRFIKHKSDATNALRDTINDYFAPEGLK--IGVIRTDGGGE*HG-QFLSFLSELGIKR*FTPPYTPQYNDIVERALGLLRDKTVA--LLRGVLEG-----KSNRLWAEAMA----------------GTSSYELWYGRRPTFDNIPPFGTVEYLRRSEPGHKLAPRGASCIMLG 720
+FH + H + + R TA+ G +L G C CS ++ + + + T++R D++ R+F+DL G S+GG + M+ DDFTR + F+KHKSDA A R + A +G+ + ++R+D GGE G +F S +EL IK+ FTP Y+PQYN + ER LGL+ + +A + VL G K+++LWAEAM S YE+WYG P PF Y R P KL P+G SC +G
Sbjct: 668 EFHNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRA-DGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGE-PRPARPYPFLKPAYCRWQRPS-KLLPKGESCFYVG 929
BLAST of mRNA_H-elongata_contig198939.5581.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE) HSP 1 Score: 148 bits (374), Expect = 3.480e-37 Identity = 95/265 (35.85%), Postives = 139/265 (52.45%), Query Frame = 1
Query: 4 KFHEVLGHPAEQITRNTARMAGAQLSGIWRSCVHCSESRVRRYAVPKSTENRVDRRAERLFIDLSGPFHETSLGGNRFVMLCIDDFTRFKMVRFIKHKSDATNALRDTINDYFAPEGLK--IGVIRTDGGGE*HG-QFLSFLSELGIKR*FTPPYTPQYNDIVERALGLLRDKTVA--LLRGVLEG-----KSNRLWAEAMA----------------GTSSYELWYGRRPTFDNIPPFGTVEYLRRSEPGHKLAPRGASCIMLG 720
+FH + H + + R TA+ G +L G C CS ++ + + + T++R D++ R+F+DL G S+GG + M+ DDFTR + F+KHKSDA A R + A +G+ + ++R+D GGE G +F S +EL IK+ FTP Y+PQYN + ER LGL+ + +A + VL G K+++LWAEAM S YE+WYG P PF Y R P KL P+G SC +G
Sbjct: 375 EFHNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRA-DGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGE-PRPARPYPFLKPAYCRWQRPS-KLLPKGESCFYVG 636
BLAST of mRNA_H-elongata_contig198939.5581.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE) HSP 1 Score: 144 bits (364), Expect = 1.800e-36 Identity = 96/266 (36.09%), Postives = 138/266 (51.88%), Query Frame = 1
Query: 4 KFHEVLGHPAEQITRNTARMAGAQLSGIWRSCVHCSESRVRRYAVPKSTENRVDRRAERLFIDLSGPFHETSLGGNRFVMLCIDDFTRFKMVRFIKHKSDATNALRD---TINDYFAPEGLKIGVIRTDGGGE*HG-QFLSFLSELGIKR*FTPPYTPQYNDIVERALGLLRDKTVA--LLRGVLEG-----KSNRLWAEAMA----------------GTSSYELWYGRRPTFDNIPPFGTVEYLRRSEPGHKLAPRGASCIMLG 720
+FH + H E + R TA+ G +L G +C CS S+ R + + T+ R D++ R+F+DL G S+GG + M+ DDFTR + F+K++SDA A R ++ P ++I +R+D GGE G +F S +EL IK+ FTP Y+PQYN + ER LGL+ + +A + VL G K+++LWAEAM S YE+WYG P PF Y R P KL P+G SC +G
Sbjct: 256 EFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWMYFLKNESDAGGAFRTFLASVRANIVPSFVEI--VRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFLKPAYCRWQRPT-KLLPKGESCFYVG 517
BLAST of mRNA_H-elongata_contig198939.5581.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE) HSP 1 Score: 145 bits (366), Expect = 3.690e-36 Identity = 97/265 (36.60%), Postives = 140/265 (52.83%), Query Frame = 1
Query: 4 KFHEVLGHPAEQITRNTARMAGAQLSGIWRSCVHCSESRVRRYAVPKSTENRVDRRAERLFIDLSGPFHETSLGGNRFVMLCIDDFTRFKMVRFIKHKSDATNALRDTINDYFAPEGLK--IGVIRTDGGGE*HG-QFLSFLSELGIKR*FTPPYTPQYNDIVERALGLLRDKTVA--LLRGVLEG-----KSNRLWAEAM-------------AGTSS---YELWYGRRPTFDNIPPFGTVEYLRRSEPGHKLAPRGASCIMLG 720
+FH + H E + R TA+ G +L G +C CS S+ R + + T+ R D++ R+F+DL G S+GG + M+ DDFTR + F+++KSDA +A R + A G+ + ++R+D GGE G +F S +EL IK+ FTP Y+PQYN + ER LGL+ + +A + VL G K+++LWAEAM A S YE+WYG P PF Y R P KL P+G SC +G
Sbjct: 134 EFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDSASVGGKHYPMIVKDDFTRRTWMYFLRNKSDAGSAFRTFLASVRA-NGVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMPPYEMWYGE-PRPARPYPFLKPAYCRWQRPT-KLLPKGESCFYVG 395
BLAST of mRNA_H-elongata_contig198939.5581.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE) HSP 1 Score: 144 bits (364), Expect = 7.450e-36 Identity = 96/265 (36.23%), Postives = 138/265 (52.08%), Query Frame = 1
Query: 4 KFHEVLGHPAEQITRNTARMAGAQLSGIWRSCVHCSESRVRRYAVPKSTENRVDRRAERLFIDLSGPFHETSLGGNRFVMLCIDDFTRFKMVRFIKHKSDATNALRDTINDYFAPEGLK--IGVIRTDGGGE*HG-QFLSFLSELGIKR*FTPPYTPQYNDIVERALGLLRDKTVA--LLRGVLEG-----KSNRLWAEAMA----------------GTSSYELWYGRRPTFDNIPPFGTVEYLRRSEPGHKLAPRGASCIMLG 720
+FH + H E + R TA+ G +L G +C CS S+ R + T+ R D++ R+F+DL G S+GG + M+ DDFTR + F+++KSDA +A R + A G+ + ++R+D GGE G +F S +EL IK+ FTP Y+PQYN + ER LGL+ + +A + VL G K+++LWAEAM S YE+WYG P PF Y R P KL P+G SC +G
Sbjct: 189 EFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVGETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWICFLRNKSDAGSAFRTFLASVRA-NGVPSFVEIVRSDNGGEFFGGEFTSVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFLKPAYCRWQRPT-KLLPKGESCFYVG 450
BLAST of mRNA_H-elongata_contig198939.5581.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE) HSP 1 Score: 144 bits (362), Expect = 1.270e-35 Identity = 96/269 (35.69%), Postives = 139/269 (51.67%), Query Frame = 1
Query: 4 KFHEVLGHPAEQITRNTARMAGAQLSGIWRSCVHCSESRVRRYAVPKSTENRVDRRAERLFIDLSGPFHETSLGGNRFVMLCIDDFTRFKMVRFIKHKSDATNALRDTINDYFAPEGLK--IGVIRTDGGGE*HG-QFLSFLSELGIKR*FTPPYTPQYNDIVERALGLLRDKTVA--LLRGVLEG-----KSNRLWAEAMA----------------GTSSYELWYGR----RPTFDNIPPFGTVEYLRRSEPGHKLAPRGASCIMLG 720
+FH + H E + R TA+ G +L+G +C CS S+ + + T+ R D++ R+F+DL G S+GG + M+ DDFTR + F+K KSDA +A R + A +G+ + ++R+D GGE G +F S +EL IK+ FTP Y+PQYN + ER LGL+ +A + VL G K++RLWAEAM S YE+W+G RP PF Y R P KL P+G +C +G
Sbjct: 574 EFHNIYAHSHEGLLRTTAKRLGIELTGKMHACTGCSMSKAFKKGIAHETKCRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRTWMYFLKSKSDAASAFRSFLASVRA-DGIPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEAINHTACSANPDSKSPYEMWHGEASHARPY-----PFLKPAYCRWQRPS-KLLPKGEACFYVG 835
BLAST of mRNA_H-elongata_contig198939.5581.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE) HSP 1 Score: 133 bits (334), Expect = 4.400e-33 Identity = 81/197 (41.12%), Postives = 109/197 (55.33%), Query Frame = 1
Query: 10 HEVLGHPAEQITRNTARMAGAQLSG-IWRSCVHCSESRVRRYAVPKSTENRVDRRAERLFIDLSGPFHETSLGGNRFVMLCIDDFTRFKMVRFIKHKSDATNALRDTINDYFAPE-GLKIGVIRTDGGGE*HGQFLSFLSELGIKR*FTPPYTPQYNDIVERALGLLRDKTVALLRGVLE-----GKSNRLWAEAMA 579
H GH E++ + TA+ G QL+G C+ CS S+ + + KST+ R + RLF++L G S+GGN + ++ DD TR+ V F+KHKSDA A + DY A ++ V RTDGGGE GQF GIK+ FTPP TP+YN + ERALGLL D +A E S LWAEA++
Sbjct: 139 HNSHGHTHEELLQKTAKQQGVQLTGGPLLPCLGCSMSKGQVKPISKSTDTRAANKLFRLFLNLGGRMQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPVSPGLWAEAIS 335
BLAST of mRNA_H-elongata_contig198939.5581.1 vs. uniprot
Match: A0A6H5KPZ8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPZ8_9PHAE) HSP 1 Score: 130 bits (326), Expect = 6.920e-31 Identity = 87/229 (37.99%), Postives = 118/229 (51.53%), Query Frame = 1
Query: 4 KFHEVLGHPAEQITRNTARMAGAQLS-GIWRSCVHCSESRVRRYAVPKSTENRVDRRAERLFIDLSGPFHETSLGGNRFVMLCIDDFTRFKMVRFIKHKSDATNALRDTINDYFAPEGL--KIGVIRTDGGGE*HGQFLSFLSELGIKR*FTPPYTPQYNDIVERALGLLRDKTVAL---LRGVLEGKSNR--LWAEAMA---------GTSSYELWYGRRPTFDNIPP 639
++H GH E + R TA G QL+ G C+ CS S+ + V KST +R + R+++DL G S+GGN + ++ DDF+R+ V F+KHKSDA + DY EG+ K+ + RTDGGGE GQF GIK+ TPP+TP Y D+ ERALGL+ D +A + N LWAEA++ T S E TF N PP
Sbjct: 424 EYHLAHGHAHETLLRITAEQQGVQLTDGPLLPCLGCSMSKGQVKPVQKSTSSRAVTKIFRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADYRT-EGVPCKVYIARTDGGGEFQGQFAEVCRRHGIKQELTPPHTPIYKDVAERALGLITDAALASRIQATQLFPDAPNHPGLWAEAISCACHQLKCIATKSNEGDKSAYETFHNSPP 651
BLAST of mRNA_H-elongata_contig198939.5581.1 vs. uniprot
Match: A0A6H5JM30_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM30_9PHAE) HSP 1 Score: 125 bits (314), Expect = 3.550e-29 Identity = 84/240 (35.00%), Postives = 121/240 (50.42%), Query Frame = 1
Query: 4 KFHEVLGHPAEQITRNTARMAGAQLS-GIWRSCVHCSESRVRRYAVPKSTENRVDRRAERLFIDLSGPFHETSLGGNRFVMLCIDDFTRFKMVRFIKHKSDATNALRDTINDYFAPEGL--KIGVIRTDGGGE*HGQFLSFLSELGIKR*FTPPYTPQYNDIVERALGLLRDKTVALLRGVLEGKS--------NRLWAEAMA----------------GTSSYELWYGRRPTFDNIPPF 642
++H G E + R TA G QL+ G C+ CS S + V KST R ++ R+++DL G S+GGN + ++ DDF+R+ V F+KHKSDA L + DY +G+ ++ + RTDGGGE GQF GIK+ FTPP+TP+YN + ERALG L T A L ++ LWAEA++ S+YE+++ P + PF
Sbjct: 588 EYHLAHGQARETLLRITAEQQGVQLTDGPLLPCLGCSMSTGQVKPVQKSTSTRAVKKLFRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGLEKFLADYRT-KGVPCEVYIARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERALGALGLITDAALASRIQATQLFPDAPNHPGLWAEAISCACHQLNCTATKSNEGDKSAYEMFHDSPPPVGSTYPF 826 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig198939.5581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig198939.5581.1 >prot_H-elongata_contig198939.5581.1 ID=prot_H-elongata_contig198939.5581.1|Name=mRNA_H-elongata_contig198939.5581.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp MAGAQLSGIWRSCVHCSESRVRRYAVPKSTENRVDRRAERLFIDLSGPFHback to top mRNA from alignment at H-elongata_contig198939:237..1004- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig198939.5581.1 ID=mRNA_H-elongata_contig198939.5581.1|Name=mRNA_H-elongata_contig198939.5581.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=768bp|location=Sequence derived from alignment at H-elongata_contig198939:237..1004- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig198939:237..1004- >mRNA_H-elongata_contig198939.5581.1 ID=mRNA_H-elongata_contig198939.5581.1|Name=mRNA_H-elongata_contig198939.5581.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at H-elongata_contig198939:237..1004- (Himanthalia elongata Himel1 dioecious)back to top |