mRNA_H-elongata_contig198939.5581.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig198939.5581.1
Unique NamemRNA_H-elongata_contig198939.5581.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig198939.5581.1 vs. uniprot
Match: A0A6H5KVR5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR5_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 1.620e-37
Identity = 94/265 (35.47%), Postives = 137/265 (51.70%), Query Frame = 1
Query:    4 KFHEVLGHPAEQITRNTARMAGAQLSGIWRSCVHCSESRVRRYAVPKSTENRVDRRAERLFIDLSGPFHETSLGGNRFVMLCIDDFTRFKMVRFIKHKSDATNALRDTINDYFAPEGLK--IGVIRTDGGGE*HG-QFLSFLSELGIKR*FTPPYTPQYNDIVERALGLLRDKTVA--LLRGVLEG-----KSNRLWAEAMA----------------GTSSYELWYGRRPTFDNIPPFGTVEYLRRSEPGHKLAPRGASCIMLG 720
            +FH +  H  E + R TA+  G +L G   +C  CS S+  R  + + T+ R D++  R+F DL G     S+GG  + ++  DDFTR   + F+++KSDA +A R  +    A  G+   + ++R+D GG+  G  F S  +EL IK+ FTP Y+PQYN + ER LGL+ +  +A  +   VL G     K+++LWAEAM                   S YE+WYG  P      PF    Y R   P  KL P+G SC  +G
Sbjct:   36 EFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFADLGGRKDIASVGGKHYPIIVKDDFTRHTWMYFLRNKSDAGSAFRTFLASVRA-NGVPSFVEIVRSDNGGKFFGGDFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFSKPAYCRWQRPS-KLLPKGESCFYVG 297          
BLAST of mRNA_H-elongata_contig198939.5581.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 3.440e-37
Identity = 95/265 (35.85%), Postives = 139/265 (52.45%), Query Frame = 1
Query:    4 KFHEVLGHPAEQITRNTARMAGAQLSGIWRSCVHCSESRVRRYAVPKSTENRVDRRAERLFIDLSGPFHETSLGGNRFVMLCIDDFTRFKMVRFIKHKSDATNALRDTINDYFAPEGLK--IGVIRTDGGGE*HG-QFLSFLSELGIKR*FTPPYTPQYNDIVERALGLLRDKTVA--LLRGVLEG-----KSNRLWAEAMA----------------GTSSYELWYGRRPTFDNIPPFGTVEYLRRSEPGHKLAPRGASCIMLG 720
            +FH +  H  + + R TA+  G +L G    C  CS ++  +  + + T++R D++  R+F+DL G     S+GG  + M+  DDFTR   + F+KHKSDA  A R  +    A +G+   + ++R+D GGE  G +F S  +EL IK+ FTP Y+PQYN + ER LGL+ +  +A  +   VL G     K+++LWAEAM                   S YE+WYG  P      PF    Y R   P  KL P+G SC  +G
Sbjct:  668 EFHNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRA-DGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGE-PRPARPYPFLKPAYCRWQRPS-KLLPKGESCFYVG 929          
BLAST of mRNA_H-elongata_contig198939.5581.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 3.480e-37
Identity = 95/265 (35.85%), Postives = 139/265 (52.45%), Query Frame = 1
Query:    4 KFHEVLGHPAEQITRNTARMAGAQLSGIWRSCVHCSESRVRRYAVPKSTENRVDRRAERLFIDLSGPFHETSLGGNRFVMLCIDDFTRFKMVRFIKHKSDATNALRDTINDYFAPEGLK--IGVIRTDGGGE*HG-QFLSFLSELGIKR*FTPPYTPQYNDIVERALGLLRDKTVA--LLRGVLEG-----KSNRLWAEAMA----------------GTSSYELWYGRRPTFDNIPPFGTVEYLRRSEPGHKLAPRGASCIMLG 720
            +FH +  H  + + R TA+  G +L G    C  CS ++  +  + + T++R D++  R+F+DL G     S+GG  + M+  DDFTR   + F+KHKSDA  A R  +    A +G+   + ++R+D GGE  G +F S  +EL IK+ FTP Y+PQYN + ER LGL+ +  +A  +   VL G     K+++LWAEAM                   S YE+WYG  P      PF    Y R   P  KL P+G SC  +G
Sbjct:  375 EFHNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRA-DGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGE-PRPARPYPFLKPAYCRWQRPS-KLLPKGESCFYVG 636          
BLAST of mRNA_H-elongata_contig198939.5581.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 1.800e-36
Identity = 96/266 (36.09%), Postives = 138/266 (51.88%), Query Frame = 1
Query:    4 KFHEVLGHPAEQITRNTARMAGAQLSGIWRSCVHCSESRVRRYAVPKSTENRVDRRAERLFIDLSGPFHETSLGGNRFVMLCIDDFTRFKMVRFIKHKSDATNALRD---TINDYFAPEGLKIGVIRTDGGGE*HG-QFLSFLSELGIKR*FTPPYTPQYNDIVERALGLLRDKTVA--LLRGVLEG-----KSNRLWAEAMA----------------GTSSYELWYGRRPTFDNIPPFGTVEYLRRSEPGHKLAPRGASCIMLG 720
            +FH +  H  E + R TA+  G +L G   +C  CS S+  R  + + T+ R D++  R+F+DL G     S+GG  + M+  DDFTR   + F+K++SDA  A R    ++     P  ++I  +R+D GGE  G +F S  +EL IK+ FTP Y+PQYN + ER LGL+ +  +A  +   VL G     K+++LWAEAM                   S YE+WYG  P      PF    Y R   P  KL P+G SC  +G
Sbjct:  256 EFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWMYFLKNESDAGGAFRTFLASVRANIVPSFVEI--VRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFLKPAYCRWQRPT-KLLPKGESCFYVG 517          
BLAST of mRNA_H-elongata_contig198939.5581.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 3.690e-36
Identity = 97/265 (36.60%), Postives = 140/265 (52.83%), Query Frame = 1
Query:    4 KFHEVLGHPAEQITRNTARMAGAQLSGIWRSCVHCSESRVRRYAVPKSTENRVDRRAERLFIDLSGPFHETSLGGNRFVMLCIDDFTRFKMVRFIKHKSDATNALRDTINDYFAPEGLK--IGVIRTDGGGE*HG-QFLSFLSELGIKR*FTPPYTPQYNDIVERALGLLRDKTVA--LLRGVLEG-----KSNRLWAEAM-------------AGTSS---YELWYGRRPTFDNIPPFGTVEYLRRSEPGHKLAPRGASCIMLG 720
            +FH +  H  E + R TA+  G +L G   +C  CS S+  R  + + T+ R D++  R+F+DL G     S+GG  + M+  DDFTR   + F+++KSDA +A R  +    A  G+   + ++R+D GGE  G +F S  +EL IK+ FTP Y+PQYN + ER LGL+ +  +A  +   VL G     K+++LWAEAM             A   S   YE+WYG  P      PF    Y R   P  KL P+G SC  +G
Sbjct:  134 EFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDSASVGGKHYPMIVKDDFTRRTWMYFLRNKSDAGSAFRTFLASVRA-NGVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMPPYEMWYGE-PRPARPYPFLKPAYCRWQRPT-KLLPKGESCFYVG 395          
BLAST of mRNA_H-elongata_contig198939.5581.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 7.450e-36
Identity = 96/265 (36.23%), Postives = 138/265 (52.08%), Query Frame = 1
Query:    4 KFHEVLGHPAEQITRNTARMAGAQLSGIWRSCVHCSESRVRRYAVPKSTENRVDRRAERLFIDLSGPFHETSLGGNRFVMLCIDDFTRFKMVRFIKHKSDATNALRDTINDYFAPEGLK--IGVIRTDGGGE*HG-QFLSFLSELGIKR*FTPPYTPQYNDIVERALGLLRDKTVA--LLRGVLEG-----KSNRLWAEAMA----------------GTSSYELWYGRRPTFDNIPPFGTVEYLRRSEPGHKLAPRGASCIMLG 720
            +FH +  H  E + R TA+  G +L G   +C  CS S+  R  +   T+ R D++  R+F+DL G     S+GG  + M+  DDFTR   + F+++KSDA +A R  +    A  G+   + ++R+D GGE  G +F S  +EL IK+ FTP Y+PQYN + ER LGL+ +  +A  +   VL G     K+++LWAEAM                   S YE+WYG  P      PF    Y R   P  KL P+G SC  +G
Sbjct:  189 EFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVGETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWICFLRNKSDAGSAFRTFLASVRA-NGVPSFVEIVRSDNGGEFFGGEFTSVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFLKPAYCRWQRPT-KLLPKGESCFYVG 450          
BLAST of mRNA_H-elongata_contig198939.5581.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 1.270e-35
Identity = 96/269 (35.69%), Postives = 139/269 (51.67%), Query Frame = 1
Query:    4 KFHEVLGHPAEQITRNTARMAGAQLSGIWRSCVHCSESRVRRYAVPKSTENRVDRRAERLFIDLSGPFHETSLGGNRFVMLCIDDFTRFKMVRFIKHKSDATNALRDTINDYFAPEGLK--IGVIRTDGGGE*HG-QFLSFLSELGIKR*FTPPYTPQYNDIVERALGLLRDKTVA--LLRGVLEG-----KSNRLWAEAMA----------------GTSSYELWYGR----RPTFDNIPPFGTVEYLRRSEPGHKLAPRGASCIMLG 720
            +FH +  H  E + R TA+  G +L+G   +C  CS S+  +  +   T+ R D++  R+F+DL G     S+GG  + M+  DDFTR   + F+K KSDA +A R  +    A +G+   + ++R+D GGE  G +F S  +EL IK+ FTP Y+PQYN + ER LGL+    +A  +   VL G     K++RLWAEAM                   S YE+W+G     RP      PF    Y R   P  KL P+G +C  +G
Sbjct:  574 EFHNIYAHSHEGLLRTTAKRLGIELTGKMHACTGCSMSKAFKKGIAHETKCRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRTWMYFLKSKSDAASAFRSFLASVRA-DGIPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEAINHTACSANPDSKSPYEMWHGEASHARPY-----PFLKPAYCRWQRPS-KLLPKGEACFYVG 835          
BLAST of mRNA_H-elongata_contig198939.5581.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 4.400e-33
Identity = 81/197 (41.12%), Postives = 109/197 (55.33%), Query Frame = 1
Query:   10 HEVLGHPAEQITRNTARMAGAQLSG-IWRSCVHCSESRVRRYAVPKSTENRVDRRAERLFIDLSGPFHETSLGGNRFVMLCIDDFTRFKMVRFIKHKSDATNALRDTINDYFAPE-GLKIGVIRTDGGGE*HGQFLSFLSELGIKR*FTPPYTPQYNDIVERALGLLRDKTVALLRGVLE-----GKSNRLWAEAMA 579
            H   GH  E++ + TA+  G QL+G     C+ CS S+ +   + KST+ R   +  RLF++L G     S+GGN + ++  DD TR+  V F+KHKSDA  A    + DY A     ++ V RTDGGGE  GQF       GIK+ FTPP TP+YN + ERALGLL D  +A      E       S  LWAEA++
Sbjct:  139 HNSHGHTHEELLQKTAKQQGVQLTGGPLLPCLGCSMSKGQVKPISKSTDTRAANKLFRLFLNLGGRMQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPVSPGLWAEAIS 335          
BLAST of mRNA_H-elongata_contig198939.5581.1 vs. uniprot
Match: A0A6H5KPZ8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPZ8_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 6.920e-31
Identity = 87/229 (37.99%), Postives = 118/229 (51.53%), Query Frame = 1
Query:    4 KFHEVLGHPAEQITRNTARMAGAQLS-GIWRSCVHCSESRVRRYAVPKSTENRVDRRAERLFIDLSGPFHETSLGGNRFVMLCIDDFTRFKMVRFIKHKSDATNALRDTINDYFAPEGL--KIGVIRTDGGGE*HGQFLSFLSELGIKR*FTPPYTPQYNDIVERALGLLRDKTVAL---LRGVLEGKSNR--LWAEAMA---------GTSSYELWYGRRPTFDNIPP 639
            ++H   GH  E + R TA   G QL+ G    C+ CS S+ +   V KST +R   +  R+++DL G     S+GGN + ++  DDF+R+  V F+KHKSDA       + DY   EG+  K+ + RTDGGGE  GQF       GIK+  TPP+TP Y D+ ERALGL+ D  +A       +     N   LWAEA++          T S E       TF N PP
Sbjct:  424 EYHLAHGHAHETLLRITAEQQGVQLTDGPLLPCLGCSMSKGQVKPVQKSTSSRAVTKIFRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADYRT-EGVPCKVYIARTDGGGEFQGQFAEVCRRHGIKQELTPPHTPIYKDVAERALGLITDAALASRIQATQLFPDAPNHPGLWAEAISCACHQLKCIATKSNEGDKSAYETFHNSPP 651          
BLAST of mRNA_H-elongata_contig198939.5581.1 vs. uniprot
Match: A0A6H5JM30_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM30_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 3.550e-29
Identity = 84/240 (35.00%), Postives = 121/240 (50.42%), Query Frame = 1
Query:    4 KFHEVLGHPAEQITRNTARMAGAQLS-GIWRSCVHCSESRVRRYAVPKSTENRVDRRAERLFIDLSGPFHETSLGGNRFVMLCIDDFTRFKMVRFIKHKSDATNALRDTINDYFAPEGL--KIGVIRTDGGGE*HGQFLSFLSELGIKR*FTPPYTPQYNDIVERALGLLRDKTVALLRGVLEGKS--------NRLWAEAMA----------------GTSSYELWYGRRPTFDNIPPF 642
            ++H   G   E + R TA   G QL+ G    C+ CS S  +   V KST  R  ++  R+++DL G     S+GGN + ++  DDF+R+  V F+KHKSDA   L   + DY   +G+  ++ + RTDGGGE  GQF       GIK+ FTPP+TP+YN + ERALG L   T A L   ++             LWAEA++                  S+YE+++   P   +  PF
Sbjct:  588 EYHLAHGQARETLLRITAEQQGVQLTDGPLLPCLGCSMSTGQVKPVQKSTSTRAVKKLFRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGLEKFLADYRT-KGVPCEVYIARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERALGALGLITDAALASRIQATQLFPDAPNHPGLWAEAISCACHQLNCTATKSNEGDKSAYEMFHDSPPPVGSTYPF 826          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig198939.5581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVR5_9PHAE1.620e-3735.47Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JBA7_9PHAE3.440e-3735.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZH7_9PHAE3.480e-3735.85Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV76_9PHAE1.800e-3636.09Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5L3Y0_9PHAE3.690e-3636.60Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JRL9_9PHAE7.450e-3636.23Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5K2M6_9PHAE1.270e-3535.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LL52_9PHAE4.400e-3341.12Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KPZ8_9PHAE6.920e-3137.99Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JM30_9PHAE3.550e-2935.00Integrase catalytic domain-containing protein (Fra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig198939contigH-elongata_contig198939:237..1004 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score67.8
Seed ortholog evalue3.7e-09
Seed eggNOG ortholog4558.Sb10g023023.1
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs37THH@33090,3GG2K@35493,3IIIB@38820,3M5VU@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size720
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig198939.5581.1prot_H-elongata_contig198939.5581.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig198939 609..944 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930123.0903766-UTR-H-elongata_contig198939:236..3781622930123.0903766-UTR-H-elongata_contig198939:236..378Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig198939 237..378 -
1691679289.7577453-UTR-H-elongata_contig198939:236..3781691679289.7577453-UTR-H-elongata_contig198939:236..378Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig198939 237..378 -
1622930123.1068697-UTR-H-elongata_contig198939:426..6081622930123.1068697-UTR-H-elongata_contig198939:426..608Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig198939 427..608 -
1691679289.773515-UTR-H-elongata_contig198939:426..6081691679289.773515-UTR-H-elongata_contig198939:426..608Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig198939 427..608 -
1622930123.1364295-UTR-H-elongata_contig198939:944..10041622930123.1364295-UTR-H-elongata_contig198939:944..1004Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig198939 945..1004 -
1691679289.8027592-UTR-H-elongata_contig198939:944..10041691679289.8027592-UTR-H-elongata_contig198939:944..1004Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig198939 945..1004 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930123.1220472-CDS-H-elongata_contig198939:608..9441622930123.1220472-CDS-H-elongata_contig198939:608..944Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig198939 609..944 -
1691679289.7845893-CDS-H-elongata_contig198939:608..9441691679289.7845893-CDS-H-elongata_contig198939:608..944Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig198939 609..944 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig198939.5581.1

>prot_H-elongata_contig198939.5581.1 ID=prot_H-elongata_contig198939.5581.1|Name=mRNA_H-elongata_contig198939.5581.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp
MAGAQLSGIWRSCVHCSESRVRRYAVPKSTENRVDRRAERLFIDLSGPFH
ETSLGGNRFVMLCIDDFTRFKMVRFIKHKSDATNALRDTINDYFAPEGLK
IGVIRTDGGGE*
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mRNA from alignment at H-elongata_contig198939:237..1004-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig198939.5581.1 ID=mRNA_H-elongata_contig198939.5581.1|Name=mRNA_H-elongata_contig198939.5581.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=768bp|location=Sequence derived from alignment at H-elongata_contig198939:237..1004- (Himanthalia elongata Himel1 dioecious)
GTCAAGTTCCACGAGGTGCTGGGGCACCCGGCAGAGCAGATCACGCGTAA CACGGCTCGTATGGCGGGCGCGCAATTAAGCGGAATTTGGCGATCATGCG TACACTGCTCCGAATCTAGGGTGCGGCGATACGCCGTGCCTAAATCCACG GAGAATCGGGTTGACAGGCGCGCGGAACGGCTGTTTATTGATCTCTCAGG ACCCTTTCACGAGACGTCTCTCGGAGGAAACAGATTCGTCATGCTGTGCA TTGACGACTTCACCCGCTTCAAAATGGTCCGTTTCATCAAGCACAAGAGC GACGCCACGAATGCGTTAAGGGACACAATCAACGACTACTTCGCGCCCGA GGGCCTCAAGATCGGCGTCATCCGCACGGACGGTGGGGGAGAATGACACG GCCAGTTCCTGTCTTTCCTGAGTGAGCTCGGAATCAAGCGCTAGTTCACA CCCCCATATACCCCCCAATACAATGACATCGTGGAGCGCGCTCTGGGGCT ACTACGCGACAAGACCGTGGCCCTGCTGCGAGGTGTATTGGAGGGTAAGA GCAACCGTCTATGGGCGGAAGCTATGGCGTACGCATGCGATATGTGGAAC CGATGCACCTCCTCCTCCCTCGACAGCGGCACCTCATCATATGAGCTTTG GTACGGCCGACGTCCGACATTCGACAACATCCCCCCGTTCGGGACCGTGG AATATCTACGACGGTCAGAGCCGGGGCACAAGCTAGCCCCCCGCGGGGCT AGCTGCATCATGCTTGGG
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Coding sequence (CDS) from alignment at H-elongata_contig198939:237..1004-

>mRNA_H-elongata_contig198939.5581.1 ID=mRNA_H-elongata_contig198939.5581.1|Name=mRNA_H-elongata_contig198939.5581.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at H-elongata_contig198939:237..1004- (Himanthalia elongata Himel1 dioecious)
ATGGCGGGCGCGCAATTAAGCGGAATTTGGCGATCATGCGTACACTGCTC
CGAATCTAGGGTGCGGCGATACGCCGTGCCTAAATCCACGGAGAATCGGG
TTGACAGGCGCGCGGAACGGCTGTTTATTGATCTCTCAGGACCCTTTCAC
GAGACGTCTCTCGGAGGAAACAGATTCGTCATGCTGTGCATTGACGACTT
CACCCGCTTCAAAATGGTCCGTTTCATCAAGCACAAGAGCGACGCCACGA
ATGCGTTAAGGGACACAATCAACGACTACTTCGCGCCCGAGGGCCTCAAG
ATCGGCGTCATCCGCACGGACGGTGGGGGAGAATGAATGGCGGGCGCGCA
ATTAAGCGGAATTTGGCGATCATGCGTACACTGCTCCGAATCTAGGGTGC
GGCGATACGCCGTGCCTAAATCCACGGAGAATCGGGTTGACAGGCGCGCG
GAACGGCTGTTTATTGATCTCTCAGGACCCTTTCACGAGACGTCTCTCGG
AGGAAACAGATTCGTCATGCTGTGCATTGACGACTTCACCCGCTTCAAAA
TGGTCCGTTTCATCAAGCACAAGAGCGACGCCACGAATGCGTTAAGGGAC
ACAATCAACGACTACTTCGCGCCCGAGGGCCTCAAGATCGGCGTCATCCG
CACGGACGGTGGGGGAGAATGA
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