prot_H-elongata_contig198939.5581.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig198939.5581.1
Unique Nameprot_H-elongata_contig198939.5581.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length112
Homology
BLAST of mRNA_H-elongata_contig198939.5581.1 vs. uniprot
Match: A0A1Y1LP39_PHOPY (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1LP39_PHOPY)

HSP 1 Score: 67.8 bits (164), Expect = 6.770e-11
Identity = 38/109 (34.86%), Postives = 55/109 (50.46%), Query Frame = 0
Query:    3 GAQLSGIWRSCVHCSESRVRRYAVPKSTENRVDRRAERLFIDLSGPFHETSLGGNRFVMLCIDDFTRFKMVRFIKHKSDATNALRDTINDYFAPEGLKIGVIRTDGGGE 111
            G + SG   +CV C + +  R   P+   +R     E L  DL GP +  S+GG R+V+  IDD+TR   V F+K K++    L +         G +I  IR+D GGE
Sbjct:  114 GLEYSGTMEACVSCIKGKQHRLPFPQKKVHRATEVLELLHSDLCGPMNVPSIGGARYVLTLIDDYTRMTFVSFLKTKNEVFTKLSEFRTYIENQTGKRIKAIRSDRGGE 222          
BLAST of mRNA_H-elongata_contig198939.5581.1 vs. uniprot
Match: A0A085N151_9BILA (Uncharacterized protein n=1 Tax=Trichuris suis TaxID=68888 RepID=A0A085N151_9BILA)

HSP 1 Score: 66.6 bits (161), Expect = 1.680e-10
Identity = 33/99 (33.33%), Postives = 55/99 (55.56%), Query Frame = 0
Query:   13 CVHCSESRVRRYAVPKSTENRVDRRAERLFIDLSGPFHETSLGGNRFVMLCIDDFTRFKMVRFIKHKSDATNALRDTINDYFAPEGLKIGVIRTDGGGE 111
            C  C   ++ +   P S ++R  +  E +  DL GP    +  GNR+ +  IDD++R+ +VR +KHKS   NA+++ + ++    G K  V+RTD G E
Sbjct:  462 CECCIRGKLNQQPFPNS-KSRAAKPLELIHSDLCGPMQTATPSGNRYCLTVIDDYSRYAVVRLLKHKSQVPNAIQEIVREWTTQVGYKPKVLRTDNGKE 559          
BLAST of mRNA_H-elongata_contig198939.5581.1 vs. uniprot
Match: A0A0A9XD75_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=4 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9XD75_LYGHE)

HSP 1 Score: 65.5 bits (158), Expect = 4.490e-10
Identity = 35/84 (41.67%), Postives = 48/84 (57.14%), Query Frame = 0
Query:   28 KSTENRVDRRAERLFIDLSGPFHETSLGGNRFVMLCIDDFTRFKMVRFIKHKSDATNALRDTINDYFAPEGLKIGVIRTDGGGE 111
            K +++R     + L +DL GP    S+GG RF+   +DD +R+  V F+KHKSDA    +D         GLKI +IRTDGG E
Sbjct:  239 KPSKHRAKNILDLLHLDLCGPMETASIGGKRFMFTIVDDCSRYTHVFFLKHKSDAFAVFKDFQTLVERQMGLKIKMIRTDGGTE 322          
BLAST of mRNA_H-elongata_contig198939.5581.1 vs. uniprot
Match: A0A6V7M0T8_9HYME (Uncharacterized protein n=1 Tax=Bracon brevicornis TaxID=1563983 RepID=A0A6V7M0T8_9HYME)

HSP 1 Score: 64.7 bits (156), Expect = 8.420e-10
Identity = 34/99 (34.34%), Postives = 52/99 (52.53%), Query Frame = 0
Query:   13 CVHCSESRVRRYAVPKSTENRVDRRAERLFIDLSGPFHETSLGGNRFVMLCIDDFTRFKMVRFIKHKSDATNALRDTINDYFAPEGLKIGVIRTDGGGE 111
            C  C + ++ R   PK + ++  +R E L +DL GP    ++GG R++M  IDDF+R+  V  +  KS     +RD I +     G K    R+D GGE
Sbjct:  349 CSSCIKGKLSRKPFPKESLSKTTKRLELLHMDLCGPMPTKTVGGRRYLMTIIDDFSRYTFVYLLTEKSQDERVIRDFIAEMKTQYGEKPKCFRSDRGGE 447          
BLAST of mRNA_H-elongata_contig198939.5581.1 vs. uniprot
Match: A0A0V1LL02_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella nativa TaxID=6335 RepID=A0A0V1LL02_9BILA)

HSP 1 Score: 62.0 bits (149), Expect = 1.130e-9
Identity = 34/99 (34.34%), Postives = 50/99 (50.51%), Query Frame = 0
Query:   13 CVHCSESRVRRYAVPKSTENRVDRRAERLFIDLSGPFHETSLGGNRFVMLCIDDFTRFKMVRFIKHKSDATNALRDTINDYFAPEGLKIGVIRTDGGGE 111
            CV C + +  R   PKS   R +   E +  D+ GP    S+GG R+ +  IDDF+R   V F+KHK++A    +D I         ++  +RTD G E
Sbjct:   43 CVTCLKGKQCRLPFPKSATKRSEEVLELVHSDICGPMQAASVGGARYFLSFIDDFSRKSFVYFLKHKNEALPKFKDFIAMVERQTSKRVKCLRTDNGRE 141          
BLAST of mRNA_H-elongata_contig198939.5581.1 vs. uniprot
Match: A0A6P9DXA8_JUGRE (uncharacterized protein LOC118344254 n=3 Tax=Juglans TaxID=16718 RepID=A0A6P9DXA8_JUGRE)

HSP 1 Score: 64.3 bits (155), Expect = 1.170e-9
Identity = 36/99 (36.36%), Postives = 51/99 (51.52%), Query Frame = 0
Query:   13 CVHCSESRVRRYAVPKSTENRVDRRAERLFIDLSGPFHETSLGGNRFVMLCIDDFTRFKMVRFIKHKSDATNALRDTINDYFAPEGLKIGVIRTDGGGE 111
            C  C   +  R A   +T    +R  E L IDL GP    SLGG R++++ +DDFTR+  V F++ K +A N +R         +G  I  IR+D G E
Sbjct:  871 CGSCQLGKQVRTAHKNTTAILTERPLELLHIDLMGPSRTESLGGKRYILVMVDDFTRYSWVEFLREKGEAPNVIRTLCKKLQNEQGKAIVRIRSDHGRE 969          
BLAST of mRNA_H-elongata_contig198939.5581.1 vs. uniprot
Match: A0A558HBQ0_9GAMM (DDE-type integrase/transposase/recombinase (Fragment) n=2 Tax=Cobetia crustatorum TaxID=553385 RepID=A0A558HBQ0_9GAMM)

HSP 1 Score: 61.6 bits (148), Expect = 3.210e-9
Identity = 34/107 (31.78%), Postives = 55/107 (51.40%), Query Frame = 0
Query:    5 QLSGIWRSCVHCSESRVRRYAVPKSTENRVDRRAERLFIDLSGPFHETSLGGNRFVMLCIDDFTRFKMVRFIKHKSDATNALRDTINDYFAPEGLKIGVIRTDGGGE 111
            +L  + + C  C   +  R +  K   N   R  E L +DL GP    S GG +++++ +DDFTRF  V F+K KS+  + ++  I      +G ++  IR+D G E
Sbjct:   80 KLQKVDKICGECQLGKQIRSSHKKVNSNTTSRPLELLHMDLIGPTRTESRGGKKYILVIVDDFTRFTWVSFLKDKSETLDEVKKIIKRIQNEKGSQVYKIRSDHGSE 186          
BLAST of mRNA_H-elongata_contig198939.5581.1 vs. uniprot
Match: A0A0V1LCB2_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Trichinella TaxID=6333 RepID=A0A0V1LCB2_9BILA)

HSP 1 Score: 61.6 bits (148), Expect = 3.730e-9
Identity = 34/99 (34.34%), Postives = 50/99 (50.51%), Query Frame = 0
Query:   13 CVHCSESRVRRYAVPKSTENRVDRRAERLFIDLSGPFHETSLGGNRFVMLCIDDFTRFKMVRFIKHKSDATNALRDTINDYFAPEGLKIGVIRTDGGGE 111
            CV C + +  R   PKS   R +   E +  D+ GP    S+GG R+ +  IDDF+R   V F+KHK++A    +D I         ++  +RTD G E
Sbjct:  100 CVTCLKGKQCRLPFPKSATKRSEEVLELVHSDICGPMQVASVGGARYFLSFIDDFSRKSFVYFLKHKNEALPKFKDFIAMVERQTSKRVKCLRTDNGRE 198          
BLAST of mRNA_H-elongata_contig198939.5581.1 vs. uniprot
Match: UPI001C718580 (uncharacterized protein LOC122278499 n=1 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001C718580)

HSP 1 Score: 62.8 bits (151), Expect = 3.930e-9
Identity = 35/99 (35.35%), Postives = 53/99 (53.54%), Query Frame = 0
Query:   13 CVHCSESRVRRYAVPKSTENRVDRRAERLFIDLSGPFHETSLGGNRFVMLCIDDFTRFKMVRFIKHKSDATNALRDTINDYFAPEGLKIGVIRTDGGGE 111
            C  C   +  R A  K+T+    +  E L IDL GP    SLGG R++++ +DDFTR+  V F++ K++A N ++         +G  I  IR+D G E
Sbjct:  404 CGSCQLGKQVRIARKKTTDILTGQSLELLHIDLMGPSRTESLGGKRYILVMVDDFTRYSWVGFLREKAEAPNVIKILCKKLQNEQGKVIVRIRSDHGRE 502          
BLAST of mRNA_H-elongata_contig198939.5581.1 vs. uniprot
Match: A0A6D2L2S5_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2L2S5_9BRAS)

HSP 1 Score: 60.8 bits (146), Expect = 4.370e-9
Identity = 34/99 (34.34%), Postives = 49/99 (49.49%), Query Frame = 0
Query:   13 CVHCSESRVRRYAVPKSTENRVDRRAERLFIDLSGPFHETSLGGNRFVMLCIDDFTRFKMVRFIKHKSDATNALRDTINDYFAPEGLKIGVIRTDGGGE 111
            C  C   +  R A P++T  R  +  E +  DL GP   ++L GNR++ + IDD +R+     +K KSDA N  +   +      G  I   RTD GGE
Sbjct:   54 CGSCLLGKQSRQAFPQATTFRASKNLELVHGDLCGPITPSTLAGNRYIFVLIDDHSRYMWTALLKEKSDAFNKFKRFKSLVEQESGASIQTFRTDRGGE 152          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig198939.5581.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Y1LP39_PHOPY6.770e-1134.86Integrase catalytic domain-containing protein (Fra... [more]
A0A085N151_9BILA1.680e-1033.33Uncharacterized protein n=1 Tax=Trichuris suis Tax... [more]
A0A0A9XD75_LYGHE4.490e-1041.67Retrovirus-related Pol polyprotein from transposon... [more]
A0A6V7M0T8_9HYME8.420e-1034.34Uncharacterized protein n=1 Tax=Bracon brevicornis... [more]
A0A0V1LL02_9BILA1.130e-934.34Retrovirus-related Pol polyprotein from transposon... [more]
A0A6P9DXA8_JUGRE1.170e-936.36uncharacterized protein LOC118344254 n=3 Tax=Jugla... [more]
A0A558HBQ0_9GAMM3.210e-931.78DDE-type integrase/transposase/recombinase (Fragme... [more]
A0A0V1LCB2_9BILA3.730e-934.34Retrovirus-related Pol polyprotein from transposon... [more]
UPI001C7185803.930e-935.35uncharacterized protein LOC122278499 n=1 Tax=Carya... [more]
A0A6D2L2S5_9BRAS4.370e-934.34Integrase catalytic domain-containing protein n=1 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 27..111
e-value: 8.1E-9
score: 36.9
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 33..111

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig198939contigH-elongata_contig198939:609..944 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig198939.5581.1mRNA_H-elongata_contig198939.5581.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig198939 237..1004 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig198939.5581.1 ID=prot_H-elongata_contig198939.5581.1|Name=mRNA_H-elongata_contig198939.5581.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp
MAGAQLSGIWRSCVHCSESRVRRYAVPKSTENRVDRRAERLFIDLSGPFH
ETSLGGNRFVMLCIDDFTRFKMVRFIKHKSDATNALRDTINDYFAPEGLK
IGVIRTDGGGE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR012337RNaseH-like_sf