prot_H-elongata_contig9793.17140.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig9793.17140.1
Unique Name	prot_H-elongata_contig9793.17140.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	94

Homology

[Close]

BLAST of mRNA_H-elongata_contig9793.17140.1 vs. uniprot
Match: A0A6H5J7U9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7U9_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 3.410e-20
Identity = 50/95 (52.63%), Postives = 60/95 (63.16%), Query Frame = 0

Query:    5 RVLVDFSGKTPVQFPGGNMYKLIVRDDYSRRTKVYFLHGKDETAKYFMKYLVDT----APRKVEIARSDEGGEF-EGEFSALCARGKIKQEFTTA 94
            RV VD SGK  VQ  GG  Y LIV+DDY+R  +VYFL  K + A+ F +YL +     AP  V + RSD GGEF EGEF  +C +  IKQEFT A
Sbjct:   36 RVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPA 130

[Close]

BLAST of mRNA_H-elongata_contig9793.17140.1 vs. uniprot
Match: A0A6H5L158_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L158_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 1.400e-19
Identity = 51/95 (53.68%), Postives = 61/95 (64.21%), Query Frame = 0

Query:    5 RVLVDFSGKTPVQFPGGNMYKLIVRDDYSRRTKVYFLHGKDETAKYFMKYLV----DTAPRKVEIARSDEGGEF-EGEFSALCARGKIKQEFTTA 94
            RV VD SGK  VQ  GG  Y LIV+DDY+R  +VYFL  K + A+ F +YL     D AP  V + RSD+GGEF EGEF  +C +  IKQEFT A
Sbjct:  217 RVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRADGAPSDVMVVRSDDGGEFFEGEFGRVCRKYCIKQEFTPA 311

[Close]

BLAST of mRNA_H-elongata_contig9793.17140.1 vs. uniprot
Match: A0A6H5KGN1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGN1_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 5.040e-19
Identity = 50/95 (52.63%), Postives = 60/95 (63.16%), Query Frame = 0

Query:    5 RVLVDFSGKTPVQFPGGNMYKLIVRDDYSRRTKVYFLHGKDETAKYFMKYLVDT----APRKVEIARSDEGGEF-EGEFSALCARGKIKQEFTTA 94
            RV VD SGK  VQ  GG  Y LIV+DDY+R  +VYFL  K + A+ F +YL +     AP  V + RSD GGEF EGEF  +C +  IKQEFT A
Sbjct:   67 RVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPA 161

[Close]

BLAST of mRNA_H-elongata_contig9793.17140.1 vs. uniprot
Match: A0A6H5L3E0_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3E0_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 5.060e-19
Identity = 50/95 (52.63%), Postives = 60/95 (63.16%), Query Frame = 0

Query:    5 RVLVDFSGKTPVQFPGGNMYKLIVRDDYSRRTKVYFLHGKDETAKYFMKYLVDT----APRKVEIARSDEGGEF-EGEFSALCARGKIKQEFTTA 94
            RV VD SGK  VQ  GG  Y LIV+DDY+R  +VYFL  K + A+ F +YL +     AP  V + RSD GGEF EGEF  +C +  IKQEFT A
Sbjct:  571 RVFVDLSGKVRVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPA 665

[Close]

BLAST of mRNA_H-elongata_contig9793.17140.1 vs. uniprot
Match: A0A6H5K583_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K583_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 5.100e-19
Identity = 50/95 (52.63%), Postives = 60/95 (63.16%), Query Frame = 0

Query:    5 RVLVDFSGKTPVQFPGGNMYKLIVRDDYSRRTKVYFLHGKDETAKYFMKYLVDT----APRKVEIARSDEGGEF-EGEFSALCARGKIKQEFTTA 94
            RV VD SGK  VQ  GG  Y LIV+DDY+R  +VYFL  K + A+ F +YL +     AP  V + RSD GGEF EGEF  +C +  IKQEFT A
Sbjct: 1003 RVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPA 1097

[Close]

BLAST of mRNA_H-elongata_contig9793.17140.1 vs. uniprot
Match: A0A6H5JTI6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI6_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 5.150e-19
Identity = 50/95 (52.63%), Postives = 60/95 (63.16%), Query Frame = 0

Query:    5 RVLVDFSGKTPVQFPGGNMYKLIVRDDYSRRTKVYFLHGKDETAKYFMKYLVDT----APRKVEIARSDEGGEF-EGEFSALCARGKIKQEFTTA 94
            RV VD SGK  VQ  GG  Y LIV+DDY+R  +VYFL  K + A+ F +YL +     AP  V + RSD GGEF EGEF  +C +  IKQEFT A
Sbjct:  735 RVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPA 829

[Close]

BLAST of mRNA_H-elongata_contig9793.17140.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 5.160e-19
Identity = 50/95 (52.63%), Postives = 60/95 (63.16%), Query Frame = 0

Query:    5 RVLVDFSGKTPVQFPGGNMYKLIVRDDYSRRTKVYFLHGKDETAKYFMKYLVDT----APRKVEIARSDEGGEF-EGEFSALCARGKIKQEFTTA 94
            RV VD SGK  VQ  GG  Y LIV+DDY+R  +VYFL  K + A+ F +YL +     AP  V + RSD GGEF EGEF  +C +  IKQEFT A
Sbjct:  570 RVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPA 664

[Close]

BLAST of mRNA_H-elongata_contig9793.17140.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 5.160e-19
Identity = 50/95 (52.63%), Postives = 60/95 (63.16%), Query Frame = 0

Query:    5 RVLVDFSGKTPVQFPGGNMYKLIVRDDYSRRTKVYFLHGKDETAKYFMKYLVDT----APRKVEIARSDEGGEF-EGEFSALCARGKIKQEFTTA 94
            RV VD SGK  VQ  GG  Y LIV+DDY+R  +VYFL  K + A+ F +YL +     AP  V + RSD GGEF EGEF  +C +  IKQEFT A
Sbjct:  583 RVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPA 677

[Close]

BLAST of mRNA_H-elongata_contig9793.17140.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 5.170e-19
Identity = 50/95 (52.63%), Postives = 60/95 (63.16%), Query Frame = 0

Query:    5 RVLVDFSGKTPVQFPGGNMYKLIVRDDYSRRTKVYFLHGKDETAKYFMKYLVDT----APRKVEIARSDEGGEF-EGEFSALCARGKIKQEFTTA 94
            RV VD SGK  VQ  GG  Y LIV+DDY+R  +VYFL  K + A+ F +YL +     AP  V + RSD GGEF EGEF  +C +  IKQEFT A
Sbjct:  726 RVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPA 820

[Close]

BLAST of mRNA_H-elongata_contig9793.17140.1 vs. uniprot
Match: A0A6H5JYF9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYF9_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.120e-18
Identity = 49/95 (51.58%), Postives = 59/95 (62.11%), Query Frame = 0

Query:    5 RVLVDFSGKTPVQFPGGNMYKLIVRDDYSRRTKVYFLHGKDETAKYFMKYLV----DTAPRKVEIARSDEGGEF-EGEFSALCARGKIKQEFTTA 94
            RV VD SGK  VQ  GG  Y LIV+DDY+R  +VYFL  K + A+ F +YL     D AP  V + RSD GGEF EGE   +C +  IK+EFT A
Sbjct:  170 RVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRADGAPSDVIVVRSDNGGEFFEGEIGKVCRKYCIKEEFTAA 264

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig9793.17140.1 vs. uniprot

BLAST of mRNA_H-elongata_contig9793.17140.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5J7U9_9PHAE	3.410e-20	52.63	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5L158_9PHAE	1.400e-19	53.68	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KGN1_9PHAE	5.040e-19	52.63	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5L3E0_9PHAE	5.060e-19	52.63	Integrase catalytic domain-containing protein (Fra...	[more]
A0A6H5K583_9PHAE	5.100e-19	52.63	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JTI6_9PHAE	5.150e-19	52.63	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JZQ8_9PHAE	5.160e-19	52.63	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JN00_9PHAE	5.160e-19	52.63	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KF60_9PHAE	5.170e-19	52.63	Uncharacterized protein n=12 Tax=Ectocarpus sp. CC...	[more]
A0A6H5JYF9_9PHAE	1.120e-18	51.58	Integrase catalytic domain-containing protein n=1 ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 3..94 e-value: 3.2E-9 score: 38.3
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 4..93

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig9793	contig	H-elongata_contig9793:3515..3796 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig9793.17140.1	mRNA_H-elongata_contig9793.17140.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig9793 3515..3796 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig9793.17140.1 ID=prot_H-elongata_contig9793.17140.1|Name=mRNA_H-elongata_contig9793.17140.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
SFGGRVLVDFSGKTPVQFPGGNMYKLIVRDDYSRRTKVYFLHGKDETAKY
FMKYLVDTAPRKVEIARSDEGGEFEGEFSALCARGKIKQEFTTA

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036397	RNaseH_sf
IPR012337	RNaseH-like_sf