mRNA_H-elongata_contig9793.17140.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-elongata_contig9793.17140.1 vs. uniprot
Match: A0A6H5J7U9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7U9_9PHAE) HSP 1 Score: 90.1 bits (222), Expect = 3.410e-20 Identity = 50/95 (52.63%), Postives = 60/95 (63.16%), Query Frame = 1 Query: 13 RVLVDFSGKTPVQFPGGNMYKLIVRDDYSRRTKVYFLHGKDETAKYFMKYLVDT----APRKVEIARSDEGGEF-EGEFSALCARGKIKQEFTTA 282
RV VD SGK VQ GG Y LIV+DDY+R +VYFL K + A+ F +YL + AP V + RSD GGEF EGEF +C + IKQEFT A
Sbjct: 36 RVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPA 130
BLAST of mRNA_H-elongata_contig9793.17140.1 vs. uniprot
Match: A0A6H5L158_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L158_9PHAE) HSP 1 Score: 91.7 bits (226), Expect = 1.400e-19 Identity = 51/95 (53.68%), Postives = 61/95 (64.21%), Query Frame = 1 Query: 13 RVLVDFSGKTPVQFPGGNMYKLIVRDDYSRRTKVYFLHGKDETAKYFMKYLV----DTAPRKVEIARSDEGGEF-EGEFSALCARGKIKQEFTTA 282
RV VD SGK VQ GG Y LIV+DDY+R +VYFL K + A+ F +YL D AP V + RSD+GGEF EGEF +C + IKQEFT A
Sbjct: 217 RVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRADGAPSDVMVVRSDDGGEFFEGEFGRVCRKYCIKQEFTPA 311
BLAST of mRNA_H-elongata_contig9793.17140.1 vs. uniprot
Match: A0A6H5KGN1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGN1_9PHAE) HSP 1 Score: 90.1 bits (222), Expect = 5.040e-19 Identity = 50/95 (52.63%), Postives = 60/95 (63.16%), Query Frame = 1 Query: 13 RVLVDFSGKTPVQFPGGNMYKLIVRDDYSRRTKVYFLHGKDETAKYFMKYLVDT----APRKVEIARSDEGGEF-EGEFSALCARGKIKQEFTTA 282
RV VD SGK VQ GG Y LIV+DDY+R +VYFL K + A+ F +YL + AP V + RSD GGEF EGEF +C + IKQEFT A
Sbjct: 67 RVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPA 161
BLAST of mRNA_H-elongata_contig9793.17140.1 vs. uniprot
Match: A0A6H5L3E0_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3E0_9PHAE) HSP 1 Score: 90.1 bits (222), Expect = 5.060e-19 Identity = 50/95 (52.63%), Postives = 60/95 (63.16%), Query Frame = 1 Query: 13 RVLVDFSGKTPVQFPGGNMYKLIVRDDYSRRTKVYFLHGKDETAKYFMKYLVDT----APRKVEIARSDEGGEF-EGEFSALCARGKIKQEFTTA 282
RV VD SGK VQ GG Y LIV+DDY+R +VYFL K + A+ F +YL + AP V + RSD GGEF EGEF +C + IKQEFT A
Sbjct: 571 RVFVDLSGKVRVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPA 665
BLAST of mRNA_H-elongata_contig9793.17140.1 vs. uniprot
Match: A0A6H5K583_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K583_9PHAE) HSP 1 Score: 90.1 bits (222), Expect = 5.100e-19 Identity = 50/95 (52.63%), Postives = 60/95 (63.16%), Query Frame = 1 Query: 13 RVLVDFSGKTPVQFPGGNMYKLIVRDDYSRRTKVYFLHGKDETAKYFMKYLVDT----APRKVEIARSDEGGEF-EGEFSALCARGKIKQEFTTA 282
RV VD SGK VQ GG Y LIV+DDY+R +VYFL K + A+ F +YL + AP V + RSD GGEF EGEF +C + IKQEFT A
Sbjct: 1003 RVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPA 1097
BLAST of mRNA_H-elongata_contig9793.17140.1 vs. uniprot
Match: A0A6H5JTI6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI6_9PHAE) HSP 1 Score: 90.1 bits (222), Expect = 5.150e-19 Identity = 50/95 (52.63%), Postives = 60/95 (63.16%), Query Frame = 1 Query: 13 RVLVDFSGKTPVQFPGGNMYKLIVRDDYSRRTKVYFLHGKDETAKYFMKYLVDT----APRKVEIARSDEGGEF-EGEFSALCARGKIKQEFTTA 282
RV VD SGK VQ GG Y LIV+DDY+R +VYFL K + A+ F +YL + AP V + RSD GGEF EGEF +C + IKQEFT A
Sbjct: 735 RVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPA 829
BLAST of mRNA_H-elongata_contig9793.17140.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 90.1 bits (222), Expect = 5.160e-19 Identity = 50/95 (52.63%), Postives = 60/95 (63.16%), Query Frame = 1 Query: 13 RVLVDFSGKTPVQFPGGNMYKLIVRDDYSRRTKVYFLHGKDETAKYFMKYLVDT----APRKVEIARSDEGGEF-EGEFSALCARGKIKQEFTTA 282
RV VD SGK VQ GG Y LIV+DDY+R +VYFL K + A+ F +YL + AP V + RSD GGEF EGEF +C + IKQEFT A
Sbjct: 570 RVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPA 664
BLAST of mRNA_H-elongata_contig9793.17140.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 90.1 bits (222), Expect = 5.160e-19 Identity = 50/95 (52.63%), Postives = 60/95 (63.16%), Query Frame = 1 Query: 13 RVLVDFSGKTPVQFPGGNMYKLIVRDDYSRRTKVYFLHGKDETAKYFMKYLVDT----APRKVEIARSDEGGEF-EGEFSALCARGKIKQEFTTA 282
RV VD SGK VQ GG Y LIV+DDY+R +VYFL K + A+ F +YL + AP V + RSD GGEF EGEF +C + IKQEFT A
Sbjct: 583 RVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPA 677
BLAST of mRNA_H-elongata_contig9793.17140.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 90.1 bits (222), Expect = 5.170e-19 Identity = 50/95 (52.63%), Postives = 60/95 (63.16%), Query Frame = 1 Query: 13 RVLVDFSGKTPVQFPGGNMYKLIVRDDYSRRTKVYFLHGKDETAKYFMKYLVDT----APRKVEIARSDEGGEF-EGEFSALCARGKIKQEFTTA 282
RV VD SGK VQ GG Y LIV+DDY+R +VYFL K + A+ F +YL + AP V + RSD GGEF EGEF +C + IKQEFT A
Sbjct: 726 RVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPA 820
BLAST of mRNA_H-elongata_contig9793.17140.1 vs. uniprot
Match: A0A6H5JYF9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYF9_9PHAE) HSP 1 Score: 87.4 bits (215), Expect = 1.120e-18 Identity = 49/95 (51.58%), Postives = 59/95 (62.11%), Query Frame = 1 Query: 13 RVLVDFSGKTPVQFPGGNMYKLIVRDDYSRRTKVYFLHGKDETAKYFMKYLV----DTAPRKVEIARSDEGGEF-EGEFSALCARGKIKQEFTTA 282
RV VD SGK VQ GG Y LIV+DDY+R +VYFL K + A+ F +YL D AP V + RSD GGEF EGE +C + IK+EFT A
Sbjct: 170 RVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRADGAPSDVIVVRSDNGGEFFEGEIGKVCRKYCIKEEFTAA 264 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9793.17140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig9793.17140.1 >prot_H-elongata_contig9793.17140.1 ID=prot_H-elongata_contig9793.17140.1|Name=mRNA_H-elongata_contig9793.17140.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp SFGGRVLVDFSGKTPVQFPGGNMYKLIVRDDYSRRTKVYFLHGKDETAKYback to top mRNA from alignment at H-elongata_contig9793:3515..3796+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig9793.17140.1 ID=mRNA_H-elongata_contig9793.17140.1|Name=mRNA_H-elongata_contig9793.17140.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=282bp|location=Sequence derived from alignment at H-elongata_contig9793:3515..3796+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig9793:3515..3796+ >mRNA_H-elongata_contig9793.17140.1 ID=mRNA_H-elongata_contig9793.17140.1|Name=mRNA_H-elongata_contig9793.17140.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig9793:3515..3796+ (Himanthalia elongata Himel1 dioecious)back to top |