prot_H-elongata_contig71815.14855.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig71815.14855.1
Unique Nameprot_H-elongata_contig71815.14855.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length122
Homology
BLAST of mRNA_H-elongata_contig71815.14855.1 vs. uniprot
Match: A0A438CJM8_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438CJM8_VITVI)

HSP 1 Score: 102 bits (254), Expect = 4.470e-24
Identity = 49/114 (42.98%), Postives = 76/114 (66.67%), Query Frame = 0
Query:    1 MDGQTARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTSAQASIRMVLSMIAALGWEARQVDVDMTYLEADVEKEIYAELPEAYRDS 114
            M+   + GVW +VE P G   +G + VFK K D  G IE+YK RLVA+GF Q +GI Y+E+ SP S + S+R++++++A    E +Q+DV MT+L  ++E+E+Y + PE +  S
Sbjct:    5 MNSMASNGVWNLVELPNGAKAIGCKWVFKTKKDSLGNIERYKARLVAKGFTQNEGIDYKETFSPVSKKDSLRVIMTLVAHFDLELQQMDVKMTFLNGNLEEEVYMKQPEGFSSS 118          
BLAST of mRNA_H-elongata_contig71815.14855.1 vs. uniprot
Match: A0A2I0JN73_PUNGR (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Punica granatum TaxID=22663 RepID=A0A2I0JN73_PUNGR)

HSP 1 Score: 94.7 bits (234), Expect = 8.940e-23
Identity = 42/109 (38.53%), Postives = 71/109 (65.14%), Query Frame = 0
Query:    5 TARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTSAQASIRMVLSMIAALGWEARQVDVDMTYLEADVEKEIYAELPEAYRD 113
            T  GVW +V+ P+G   +G + V+K K D    +E+YK RLVA+GF Q +GI Y E+ SP S + S+R++++++A +  E  Q+DV   +L  D+++E+Y + P+ + D
Sbjct:    2 TKNGVWDLVKLPEGAVAIGCKWVYKTKRDASSNVERYKARLVAEGFTQKEGIDYHETFSPVSKKDSLRIIMALVAHMDLELHQMDVKTAFLNGDLDEEVYMKQPKGFND 110          
BLAST of mRNA_H-elongata_contig71815.14855.1 vs. uniprot
Match: A0A438GTP0_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GTP0_VITVI)

HSP 1 Score: 101 bits (252), Expect = 1.100e-22
Identity = 49/114 (42.98%), Postives = 76/114 (66.67%), Query Frame = 0
Query:    1 MDGQTARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTSAQASIRMVLSMIAALGWEARQVDVDMTYLEADVEKEIYAELPEAYRDS 114
            M+   + GVW +VE P G   +G + VFK K D  G IE+YK RLVA+GF Q +GI Y+E+ SP S + S+R++++++A    E +Q+DV MT+L  ++E+E+Y + PE +  S
Sbjct:  343 MNSMASNGVWNLVELPNGAKSIGCKWVFKTKKDSLGNIERYKARLVAKGFTQNEGIDYKETFSPVSKKDSLRVIMTLVAHFDLELQQMDVKMTFLNGNLEEEVYMKQPEGFSSS 456          
BLAST of mRNA_H-elongata_contig71815.14855.1 vs. uniprot
Match: A0A151RVY4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RVY4_CAJCA)

HSP 1 Score: 97.8 bits (242), Expect = 1.810e-22
Identity = 48/114 (42.11%), Postives = 74/114 (64.91%), Query Frame = 0
Query:    1 MDGQTARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTSAQASIRMVLSMIAALGWEARQVDVDMTYLEADVEKEIYAELPEAYRDS 114
            M+  T+  VW +VE P G   +G R VFK K D  G IE++K RLVA+GF Q +GI Y E+ SP S + S+R++++++A   +E  Q+DV  T+L  ++E+E+Y + PE +  S
Sbjct:   17 MNSMTSNQVWDLVELPHGVKSIGCRWVFKTKKDSQGNIERHKARLVAKGFTQREGIDYSETFSPVSKKDSLRIIMALVAHFDFELHQMDVKTTFLNGNLEEEVYMKQPEGFFSS 130          
BLAST of mRNA_H-elongata_contig71815.14855.1 vs. uniprot
Match: A0A438E4T4_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=6 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E4T4_VITVI)

HSP 1 Score: 100 bits (250), Expect = 2.490e-22
Identity = 46/107 (42.99%), Postives = 72/107 (67.29%), Query Frame = 0
Query:   10 WQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTSAQASIRMVLSMIAALGWEARQVDVDMTYLEADVEKEIYAELPEAYRDSRK 116
            W+VV+ P  K  +G + ++K K + DG IE+YK RLVAQGF Q++GI Y+E  SP +   S+R  L+++ A  WE  Q+DV+  +L  D+E+E+Y +LPE ++ + K
Sbjct:  582 WKVVDLPPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQEMFSPVAKMTSVRWFLAVVVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGK 688          
BLAST of mRNA_H-elongata_contig71815.14855.1 vs. uniprot
Match: A0A438DMQ7_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438DMQ7_VITVI)

HSP 1 Score: 97.8 bits (242), Expect = 2.610e-22
Identity = 48/118 (40.68%), Postives = 73/118 (61.86%), Query Frame = 0
Query:    1 MDGQTARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTSAQASIRMVLSMIAALGWEARQVDVDMTYLEADVEKEIYAELPEAYRDSRKQI 118
            M       VW +VE P G   +G + VFK K D  G IE+YK RLVA+GF Q +GI Y E+ SP S + S+R++L+++A    E +Q+DV  T+L  ++E+E+Y + PE +  S + +
Sbjct:   17 MSSMKCNDVWDLVELPNGAKTIGCKWVFKTKKDSLGNIERYKARLVAKGFTQKEGIDYTETFSPVSKKDSLRIILALVAHFDLELQQMDVKTTFLNGELEEEVYMKQPEGFPSSDENV 134          
BLAST of mRNA_H-elongata_contig71815.14855.1 vs. uniprot
Match: A0A2K3JLR7_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3JLR7_TRIPR)

HSP 1 Score: 94.0 bits (232), Expect = 3.360e-22
Identity = 42/103 (40.78%), Postives = 67/103 (65.05%), Query Frame = 0
Query:   10 WQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTSAQASIRMVLSMIAALGWEARQVDVDMTYLEADVEKEIYAELPEAYR 112
            W V+  P GK ++G R V+K K    G +EKYK RLVA+GF Q++G  + E+ +P +   ++R +LS+  A GWE  Q+DV   +L  D+E+E+Y ++P+ Y+
Sbjct:   14 WDVMLPPVGKKIVGCRWVYKVKYKASGEVEKYKARLVAKGFTQIEGEDFNETFAPVAKMTTVRCLLSVAVAKGWELHQMDVSNAFLHGDLEEEVYMQVPDGYQ 116          
BLAST of mRNA_H-elongata_contig71815.14855.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK)

HSP 1 Score: 100 bits (249), Expect = 3.460e-22
Identity = 48/114 (42.11%), Postives = 76/114 (66.67%), Query Frame = 0
Query:    8 GVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTSAQASIRMVLSMIAALGWEARQVDVDMTYLEADVEKEIYAELPEAYRDSRKQIGLL 121
            GV++ V RP+ + ++G++ VFK K   DG++EKYK RLVAQGF QV+GI Y E+ +P +   SIR++L++ A   WE  Q+DV   +L  ++E+EIY ++P  ++ S   +  L
Sbjct: 1025 GVFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRL 1138          
BLAST of mRNA_H-elongata_contig71815.14855.1 vs. uniprot
Match: A0A438GNV2_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GNV2_VITVI)

HSP 1 Score: 100 bits (248), Expect = 4.210e-22
Identity = 46/107 (42.99%), Postives = 72/107 (67.29%), Query Frame = 0
Query:   10 WQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTSAQASIRMVLSMIAALGWEARQVDVDMTYLEADVEKEIYAELPEAYRDSRK 116
            W+VV+ P  K  +G + ++K K + DG IE+YK RLVAQGF Q++GI Y+E+ SP +   S+R  L++  A  WE  Q+DV+  +L  D+E+E+Y +LPE ++ + K
Sbjct:  113 WKVVDLPPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQETFSPVAKMTSVRCFLAIAVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGK 219          
BLAST of mRNA_H-elongata_contig71815.14855.1 vs. uniprot
Match: A0A0A9Y7J8_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Y7J8_LYGHE)

HSP 1 Score: 94.4 bits (233), Expect = 8.060e-22
Identity = 44/99 (44.44%), Postives = 67/99 (67.68%), Query Frame = 0
Query:   10 WQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTSAQASIRMVLSMIAALGWEARQVDVDMTYLEADVEKEIYAELP 108
            W +V+RP+GKTV+G+R VF+ K+  DG +E+ K RLVA+GF Q+ G HY E+ +  +  +SIR V+++ A    E  Q+D    YL  ++E+EIY E+P
Sbjct:   49 WTLVDRPEGKTVVGSRWVFRTKLKADGTVERRKARLVAKGFTQIPGTHYNETYTSVARLSSIRFVIALAAERNLELEQLDFTCAYLNGEIEEEIYMEVP 147          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71815.14855.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A438CJM8_VITVI4.470e-2442.98Retrovirus-related Pol polyprotein from transposon... [more]
A0A2I0JN73_PUNGR8.940e-2338.53Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438GTP0_VITVI1.100e-2242.98Retrovirus-related Pol polyprotein from transposon... [more]
A0A151RVY4_CAJCA1.810e-2242.11Retrovirus-related Pol polyprotein from transposon... [more]
A0A438E4T4_VITVI2.490e-2242.99Retrovirus-related Pol polyprotein from transposon... [more]
A0A438DMQ7_VITVI2.610e-2240.68Retrovirus-related Pol polyprotein from transposon... [more]
A0A2K3JLR7_TRIPR3.360e-2240.78Retrovirus-related Pol polyprotein from transposon... [more]
A0A0C2WN23_AMAMK3.460e-2242.11Integrase catalytic domain-containing protein (Fra... [more]
A0A438GNV2_VITVI4.210e-2242.99Retrovirus-related Pol polyprotein from transposon... [more]
A0A0A9Y7J8_LYGHE8.060e-2244.44Retrovirus-related Pol polyprotein from transposon... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 9..113
e-value: 5.8E-26
score: 91.6
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 10..114
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 10..114

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig71815contigH-elongata_contig71815:358..723 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig71815.14855.1mRNA_H-elongata_contig71815.14855.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig71815 73..744 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig71815.14855.1 ID=prot_H-elongata_contig71815.14855.1|Name=mRNA_H-elongata_contig71815.14855.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=122bp
MDGQTARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGF
RQVKGIHYEESSSPTSAQASIRMVLSMIAALGWEARQVDVDMTYLEADVE
KEIYAELPEAYRDSRKQIGLL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like