mRNA_H-elongata_contig71815.14855.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig71815.14855.1 vs. uniprot
Match: A0A151RVY4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RVY4_CAJCA) HSP 1 Score: 140 bits (352), Expect = 2.540e-37 Identity = 81/223 (36.32%), Postives = 127/223 (56.95%), Query Frame = 1
Query: 7 AIAREMDGQTARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTSAQASIRMVLSMIAALGWEARQVDVDMTYLEADVEKEIYAELPEAY--RDSRKQIGLL*KAMYGLVHAGLLW*KKFGIELEANGFQRSQADPCVFRRVLHGVVVXXXXXXXXXLLVASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITR 669
A+ EM+ T+ VW +VE P G +G R VFK K D G IE++K RLVA+GF Q +GI Y E+ SP S + S+R++++++A +E Q+DV T+L ++E+E+Y + PE + D + L K++YGL A W KF + + GF+ + D CV+++V G + +L+A+ K + + L F +KD+GEASY +G I R
Sbjct: 12 AMKEEMNSMTSNQVWDLVELPHGVKSIGCRWVFKTKKDSQGNIERHKARLVAKGFTQREGIDYSETFSPVSKKDSLRIIMALVAHFDFELHQMDVKTTFLNGNLEEEVYMKQPEGFFSSDGEHLVCKLNKSIYGLKQASRQWYLKFHEVVSSFGFEENIMDQCVYQKV-SGSKICFLVLYVDDILLATNDKGMLYEVKQFLSKNFDMKDMGEASYVIGIKIHR 233
BLAST of mRNA_H-elongata_contig71815.14855.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK) HSP 1 Score: 147 bits (371), Expect = 5.200e-37 Identity = 87/230 (37.83%), Postives = 128/230 (55.65%), Query Frame = 1
Query: 1 KRAIAREMDGQTARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTSAQASIRMVLSMIAALGWEARQVDVDMTYLEADVEKEIYAELPEAYRDSRKQIGLL*KAMYGLVHAGLLW*KKFGIELEANGFQRSQADPCVFRRVLH------GVVVXXXXXXXXXLLVASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITRN 672
++A E++ GV++ V RP+ + ++G++ VFK K DG++EKYK RLVAQGF QV+GI Y E+ +P + SIR++L++ A WE Q+DV +L ++E+EIY ++P ++ S + L KA+YGL A W KK EL+ GF R QAD CVF + + V V L + + TK D L S F + DLGE + L +TRN
Sbjct: 1011 RKACEAELEMFKQLGVFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQASREWYKKLSAELKTLGFTRLQADHCVFYKNMDRHPPIIAVYVDDNMVLSDSLDLVTKTKSD-------LGSRFDMTDLGEVCWILNMEVTRN 1233
BLAST of mRNA_H-elongata_contig71815.14855.1 vs. uniprot
Match: A0A0C3AKI0_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Serendipita vermifera MAFF 305830 TaxID=933852 RepID=A0A0C3AKI0_9AGAM) HSP 1 Score: 142 bits (357), Expect = 3.860e-35 Identity = 74/210 (35.24%), Postives = 114/210 (54.29%), Query Frame = 1
Query: 43 GVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTSAQASIRMVLSMIAALGWEARQVDVDMTYLEADVEKEIYAELPEAYRDSRKQIGLL*KAMYGLVHAGLLW*KKFGIELEANGFQRSQADPCVFRRVLHGVVVXXXXXXXXXLLVASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITRN 672
G W++ E + + ++G+R VF +K D+ G++ +YK RLVAQGF Q+ G+ Y ++ SP ++R +++ A WE RQ+D+ YL ++E+EI+ E PE + D ++ L +YGL AG +W KK +L GF R+ ADPCV+ G + +L + R + V L F +KDLGE LG I RN
Sbjct: 885 GTWELDEPDEERKLVGSRWVFAKKYDEHGKVNQYKARLVAQGFSQIPGVDYTDNYSPVVRLDAVRACIALSAIKDWEMRQIDIKGAYLNGELEEEIFMEQPEGFNDGSGRVCRLKLPLYGLKQAGRMWNKKLNAQLTTLGFNRTNADPCVYYNNQDGKITILTVWVDDIILCGDSESRIDT-TVSALKKIFEVKDLGEPKLLLGIQIIRN 1093
BLAST of mRNA_H-elongata_contig71815.14855.1 vs. uniprot
Match: A0A182GIT5_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GIT5_AEDAL) HSP 1 Score: 139 bits (351), Expect = 4.210e-35 Identity = 77/225 (34.22%), Postives = 123/225 (54.67%), Query Frame = 1
Query: 1 KRAIAREMDGQTARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTSAQASIRMVLSMIAALGWEARQVDVDMTYLEADVEKEIYAELPEAYRD-SRKQIGLL*KAMYGLVHAGLLW*KKFGIELEANGFQRSQADPCVFRRVLHGVVVXXXXXXXXXLLVASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITRN 672
K A+ EM G WQ+ + P G+ +G + +FKRK+D+DG + +YK RLVAQGF Q G Y+E +P Q + R++L++ + G + DV YL ++E+ I+ P Y D +R + L K++YGL AG +W KKF L+ FQ+S+ DPC++ R +G +++A + E+ ++ L F + LG+ S++LG I RN
Sbjct: 10 KAAMDDEMTSLRENGTWQLTDLPPGRKAVGCKWIFKRKLDEDGNVVRYKARLVAQGFTQKFGTDYDEVFAPVVRQVTFRVLLTVASQRGMVVKHADVKTAYLNGELEESIFMRQPPGYEDENRDAVCSLQKSLYGLKQAGYVWNKKFDQVLKRMKFQQSKNDPCLYVR-RNGKGYTYLVIYVDDMVIACNDDEEYEEIIKTLNRHFKVTSLGDISHFLGIKINRN 233
BLAST of mRNA_H-elongata_contig71815.14855.1 vs. uniprot
Match: A0A438GNV2_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GNV2_VITVI) HSP 1 Score: 138 bits (348), Expect = 2.380e-34 Identity = 80/224 (35.71%), Postives = 125/224 (55.80%), Query Frame = 1
Query: 1 KRAIAREMDGQTARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTSAQASIRMVLSMIAALGWEARQVDVDMTYLEADVEKEIYAELPEAYRDSRK-QIGLL*KAMYGLVHAGLLW*KKFGIELEANGFQRSQADPCVFRRVLHGVVVXXXXXXXXXLLVASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITR 669
+ A+A+E++ W+VV+ P K +G + ++K K + DG IE+YK RLVAQGF Q++GI Y+E+ SP + S+R L++ A WE Q+DV+ +L D+E+E+Y +LPE ++ + K ++ L K++YGL A W K L+ GFQ+S AD +F G +V L++A + E L F IK+LG+ Y LG + R
Sbjct: 97 REAMAKEIEALETNQTWKVVDLPPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQETFSPVAKMTSVRCFLAIAVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQASRQWFAKLMTALKEYGFQQSLADYSLFT-YRRGNIVMNLLVYVDDLILAGNDNKVCEAFKNFLDRKFGIKNLGQLKYILGIEVAR 319
BLAST of mRNA_H-elongata_contig71815.14855.1 vs. uniprot
Match: A5BCC7_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5BCC7_VITVI) HSP 1 Score: 138 bits (347), Expect = 8.370e-34 Identity = 80/224 (35.71%), Postives = 124/224 (55.36%), Query Frame = 1
Query: 1 KRAIAREMDGQTARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTSAQASIRMVLSMIAALGWEARQVDVDMTYLEADVEKEIYAELPEAYRDSRK-QIGLL*KAMYGLVHAGLLW*KKFGIELEANGFQRSQADPCVFRRVLHGVVVXXXXXXXXXLLVASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITR 669
+ A+A+E++ W+VV+ P K +G + ++K K + DG IE+YK RLVAQGF Q++GI Y+E SP + S+R L++ A WE Q+DV+ +L D+E+E+Y +LPE ++ + K ++ L K++YGL A W K L+ GFQ+S AD +F G +V L++A + E L F IK+LG+ Y LG + R
Sbjct: 820 REAMAKEIEALETNQTWKVVDLPPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQEXFSPVAKMTSVRCFLAVXVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQASRQWFAKLTTALKEYGFQQSLADYSLFT-YRRGNIVMNLLVYVDDLILAGNDNKVCEAFKNFLDRKFGIKNLGQLKYILGIEVAR 1042
BLAST of mRNA_H-elongata_contig71815.14855.1 vs. uniprot
Match: A0A392MGQ0_9FABA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392MGQ0_9FABA) HSP 1 Score: 135 bits (341), Expect = 9.030e-34 Identity = 74/224 (33.04%), Postives = 119/224 (53.12%), Query Frame = 1
Query: 1 KRAIAREMDGQTARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTSAQASIRMVLSMIAALGWEARQVDVDMTYLEADVEKEIYAELPEAYR-DSRKQIGLL*KAMYGLVHAGLLW*KKFGIELEANGFQRSQADPCVFRRVLHGVVVXXXXXXXXXLLVASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITR 669
+ A+++E+ W++ PKGK +G R V+K K G +EKYK RLVA+G+ QV+G + E+ +P + ++R +L++ A GWE Q+DV +L ++++E+Y E+P Y+ ++ + L K++YGL A W K L GFQ +AD +F HG L+V + E+ + L CF +KDLGE Y+LG + R
Sbjct: 204 REAMSQELKALEENKTWEMSRLPKGKKAVGCRWVYKVKYKSTGEVEKYKARLVAKGYTQVEGDDFNETFAPVAKMTTVRCLLTVAVAKGWELHQMDVSNAFLHGELDEEVYMEVPPGYKVPDKEMVCRLRKSLYGLRQASRNWYSKLSQALVKYGFQECEADHSLFT-YSHGSTFIVVLIYVDDLVVTGNDAKSCEKFKQYLSKCFHMKDLGELKYFLGLELAR 426
BLAST of mRNA_H-elongata_contig71815.14855.1 vs. uniprot
Match: A0A438FKH2_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FKH2_VITVI) HSP 1 Score: 136 bits (343), Expect = 2.510e-33 Identity = 81/224 (36.16%), Postives = 124/224 (55.36%), Query Frame = 1
Query: 7 AIAREMDGQTARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTSAQASIRMVLSMIAALGWEARQVDVDMTYLEADVEKEIYAELPEAY--RDSRKQIGLL*KAMYGLVHAGLLW*KKFGIELEANGFQRSQADPCVFRRVLHGVVVXXXXXXXXXLLVASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITRN 672
A+ EM VW +VE P G +G + VFK K D G IE+YK RLVA+GF Q +GI Y E+ SP S + S+R++L+++A E +Q+DV T+L ++E+E+Y + PE + D + + L K++YGL A W KF + + GF + D C++ +V G V +L+A+ K + + L F +KD+GEASY +G I R+
Sbjct: 442 AMKDEMSSMKCNDVWDLVELPNGVKTIGCKWVFKTKKDSLGNIERYKARLVAKGFTQKEGIDYTETFSPVSKKDSLRIILALVAHFDLELQQMDVKTTFLNGELEEEVYMKQPEGFPSSDGEQLVCKLKKSIYGLKQASRQWYLKFHNIISSFGFVENVMDQCIYLKV-SGSKVCFLVLYVDDILLATNDKGLLHEVKQFLSKNFDMKDMGEASYVIGIKIHRD 664
BLAST of mRNA_H-elongata_contig71815.14855.1 vs. uniprot
Match: A0A438E4T4_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=6 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E4T4_VITVI) HSP 1 Score: 136 bits (343), Expect = 2.780e-33 Identity = 79/225 (35.11%), Postives = 125/225 (55.56%), Query Frame = 1
Query: 1 KRAIAREMDGQTARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTSAQASIRMVLSMIAALGWEARQVDVDMTYLEADVEKEIYAELPEAYRDSRK-QIGLL*KAMYGLVHAGLLW*KKFGIELEANGFQRSQADPCVFRRVLHGVVVXXXXXXXXXLLVASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITRN 672
+ A+A+E++ W+VV+ P K +G + ++K K + DG IE+YK RLVAQGF Q++GI Y+E SP + S+R L+++ A WE Q+DV+ +L D+E+E+Y +LPE ++ + K ++ L K++YGL A W K L+ GFQ+S AD +F G +V L++A + E L F IK+L + Y LG + R+
Sbjct: 566 REAMAKEIEALETNQTWKVVDLPPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQEMFSPVAKMTSVRWFLAVVVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQASRQWFAKLMTALKEYGFQQSLADYSLFT-YRRGNIVMNLLVYVDDLILAGNDNKVCEAFKNFLDRKFGIKNLRQLKYILGIEVARS 789
BLAST of mRNA_H-elongata_contig71815.14855.1 vs. uniprot
Match: A0A438JNL3_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JNL3_VITVI) HSP 1 Score: 136 bits (343), Expect = 2.800e-33 Identity = 81/224 (36.16%), Postives = 124/224 (55.36%), Query Frame = 1
Query: 7 AIAREMDGQTARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPTSAQASIRMVLSMIAALGWEARQVDVDMTYLEADVEKEIYAELPEAY--RDSRKQIGLL*KAMYGLVHAGLLW*KKFGIELEANGFQRSQADPCVFRRVLHGVVVXXXXXXXXXLLVASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITRN 672
A+ EM VW +VE P G +G + VFK K D G IE+YK RLVA+GF Q +GI Y E+ SP S + S+R++L+++A E +Q+DV T+L ++E+E+Y + PE + D + + L K++YGL A W KF + + GF + D C++ +V G V +L+A+ K + + L F +KD+GEASY +G I R+
Sbjct: 614 AMKDEMSSMKCNDVWDLVELPNGVKTIGCKWVFKTKKDSLGNIERYKARLVAKGFTQKEGIDYTETFSPVSKKDSLRIILALVAHFDLELQQMDVKTTFLNGELEEEVYMKQPEGFPSSDGEQLVCKLKKSIYGLKQASRQWYLKFHNIISSFGFVENVMDQCIYLKV-SGSKVCFLVLYVDDILLATNDKGLLHEVKQFLSKNFDMKDMGEASYVIGIKIHRH 836 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig71815.14855.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig71815.14855.1 >prot_H-elongata_contig71815.14855.1 ID=prot_H-elongata_contig71815.14855.1|Name=mRNA_H-elongata_contig71815.14855.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=122bp MDGQTARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFback to top mRNA from alignment at H-elongata_contig71815:73..744- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig71815.14855.1 ID=mRNA_H-elongata_contig71815.14855.1|Name=mRNA_H-elongata_contig71815.14855.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=672bp|location=Sequence derived from alignment at H-elongata_contig71815:73..744- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig71815:73..744- >mRNA_H-elongata_contig71815.14855.1 ID=mRNA_H-elongata_contig71815.14855.1|Name=mRNA_H-elongata_contig71815.14855.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=732bp|location=Sequence derived from alignment at H-elongata_contig71815:73..744- (Himanthalia elongata Himel1 dioecious)back to top |