prot_H-elongata_contig6504.14092.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig6504.14092.1
Unique Nameprot_H-elongata_contig6504.14092.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length270
Homology
BLAST of mRNA_H-elongata_contig6504.14092.1 vs. uniprot
Match: A0A6H5L5H7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5H7_9PHAE)

HSP 1 Score: 257 bits (657), Expect = 5.200e-75
Identity = 126/265 (47.55%), Postives = 177/265 (66.79%), Query Frame = 0
Query:    1 MDGADRSGVP-VRMQGGVKSHIPALMFADDLVALSRSRTGIERMARQVTYWTVENEMRVGIQKCELMVVNKPRSVLQQTPDQWQIAGEPVPVVSEYTNLRLRFTENLGVPTILSERVAEGKRLVDTLTPFLRTRVIPVPMKVAMVRGVVIPRLLFGAEVYGMNKAITESMEVLLNQVWRMVGGMNRNSTILTFAIWREMGTPPICAMAAARRARALQKCRKLRTWVRYLVEEPFKHKCKTWVTGMNTWMNTYAHRLAHLAIADAP 264
            +DGA+  GVP V  Q      IP L+FADDLV +S +R  +  M   ++ W  ENEM  GI KC +M +   R  L++ PD+W++AGE +P+V  YT L L F   L V  ++  ++A G++LV  +TP+L  R IPVP+KVA+VRGV++PRLLFGAEV+GM  +IT  ++V +N+ +RMV GM+  +T+ + A+WRE+  PPICA AAARRAR +QK  KL+TW+  ++ +P+KH+  TW TG   WMN Y+HRLA     D P
Sbjct:  729 LDGAESLGVPEVGNQLERAPRIPGLLFADDLVTISPTRAKLAAMDDHISVWMAENEMSAGIHKCGVMAIGHGRRRLRERPDRWKLAGETLPIVESYTYLGLEFNRRLDVEVMMGNKLAAGEKLVTLMTPYLLCRQIPVPLKVAVVRGVILPRLLFGAEVFGMRTSITNRLQVYVNRAYRMVAGMSPKATVSSVALWRELEIPPICASAAARRARTMQKASKLKTWIASIMAQPYKHRKWTWGTGTGRWMNRYSHRLAKATSDDLP 993          
BLAST of mRNA_H-elongata_contig6504.14092.1 vs. uniprot
Match: A0A3M2C3P5_9GAMM (Reverse transcriptase domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3M2C3P5_9GAMM)

HSP 1 Score: 137 bits (346), Expect = 4.870e-33
Identity = 79/230 (34.35%), Postives = 126/230 (54.78%), Query Frame = 0
Query:   24 LMFADDLVALSRSRTGIERMARQVTYWTVENEMRVGIQKCELMVVNKPRSVLQQT-PDQWQIAGEPVPVVSEYTNLRLRFTENLGVPTILSERVAEGKRLVDTLTPFLRTRVIPVPMKVAMVRGVVIPRLLFGAEVYGMNKAITESMEVLL-NQVWRMVGGMNRNSTILTFAIWREMGTPPICAMAAARRARALQKCRKLRTWVRYLVEEPFKHKCKTWVTGMNTWMNTY 251
            L+FADDLV LS     +++    +T+W  + EM+ G+ KC +M ++ P S L     DQW + G+PVP+V EY  L      +L +   +  RV   K+ + +++PFL  R IP+ ++  +   +V P  L+GAE++G+ +  T  +  L  N + R+ G         T  + RE+  PP+ A+AAARR RA  K   L+TWV  L + P + + KTW+TG   W+  +
Sbjct:  948 LLFADDLVLLSDHPDKLQQSLDAITHWADKWEMQFGVSKCAIMGIDMPISHLSSLREDQWTLQGQPVPLVEEYVYLGTLLHNSLDMKESIRYRVGRAKKALQSVSPFLSCRSIPLHIRSRVFMSMVCPVALYGAELWGLREDRTRPIHSLFANAIQRIAG-------TYTGTLARELRIPPVAALAAARRTRAFFKFPSLKTWVSTLCQHPLRKRKKTWLTGCQYWLRRF 1170          
BLAST of mRNA_H-elongata_contig6504.14092.1 vs. uniprot
Match: A0A7S3PFX4_9STRA (Hypothetical protein n=2 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PFX4_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 3.220e-20
Identity = 48/137 (35.04%), Postives = 84/137 (61.31%), Query Frame = 0
Query:  118 EGKRLVDTLTPFLRTRVIPVPMKVAMVRGVVIPRLLFGAEVYGMNKAITESMEVLLNQVWRMVGGMNRNSTILTFAIWREMGTPPICAMAAARRARALQKCRKLRTWVRYLVEEPFKHKCKTWVTGMNTWMNTYAHR 254
            +G++    + PFL    IP+ ++  ++  V++ RLL+GAE+YGMNK++T   + LL++  +++ G++    +    +W E G PPI A+AA+RRAR  QK + LRT +  L++ P++    TW++G   W+ T   R
Sbjct:    8 KGRQTQAAIRPFLGCLDIPLCIRRQILCSVMLSRLLYGAEIYGMNKSLTRHFQQLLDESLKIMLGVSPKMPVSKLVLWEEFGIPPIAALAASRRARVFQKAQNLRTKITTLIQSPYRSLQWTWISGTMRWLRTQIGR 144          
BLAST of mRNA_H-elongata_contig6504.14092.1 vs. uniprot
Match: A0A1J5WUS4_9MICR (Reverse transcriptase domain-containing protein n=1 Tax=Amphiamblys sp. WSBS2006 TaxID=1866961 RepID=A0A1J5WUS4_9MICR)

HSP 1 Score: 100 bits (248), Expect = 4.460e-20
Identity = 69/210 (32.86%), Postives = 107/210 (50.95%), Query Frame = 0
Query:   14 QGGVKSHIPALMFADDLVALSRSRTGIERMARQVTYWTVENEMRVGIQKCELMVVNKPRSVLQQTPDQWQIAGEPVPVVSEYTNLRLRFTENLGVPTILSERVAEGKRLVDTLTPFLRTRVIPVPMKVAMVRGVVIPRLLFGAEVYGMNKAITESMEVLLNQVWRMVGGMNRNSTILTFAIWREMGTPPICAMAAARRARALQKCRKLRT 223
            +G ++     L FADDLV +  +RT + +   QV  W    EM +  +KC ++         ++      I   P+P V  YT L +   +NL    ++ +R  +G+  V  L   LR+  + +  K  +V+G+VIP +L+GAEVYG     T  M+ ++N+  +MV G   N   LT A+ R++G  PI A AA R+ RA  K   LRT
Sbjct:  626 EGRIEEEGAGLAFADDLVVMGDNRTILRKAVIQVEMWARRWEMEINPKKCGVITFYGS----EEERVGIHIGEGPIPEVKSYTYLGVELDQNLTRKAVVEKRRKKGEECVFMLEKQLRSPSLTIGHKTLLVKGIVIPTMLYGAEVYGSTGEATRGMQTVVNKALKMVAG---NCCALT-AVRRDLGMMPIQAAAAGRQERAWAKFPNLRT 827          
BLAST of mRNA_H-elongata_contig6504.14092.1 vs. uniprot
Match: A0A1J5WU32_9MICR (Reverse transcriptase domain-containing protein n=2 Tax=Amphiamblys sp. WSBS2006 TaxID=1866961 RepID=A0A1J5WU32_9MICR)

HSP 1 Score: 96.7 bits (239), Expect = 5.640e-19
Identity = 66/210 (31.43%), Postives = 105/210 (50.00%), Query Frame = 0
Query:   14 QGGVKSHIPALMFADDLVALSRSRTGIERMARQVTYWTVENEMRVGIQKCELMVVNKPRSVLQQTPDQWQIAGEPVPVVSEYTNLRLRFTENLGVPTILSERVAEGKRLVDTLTPFLRTRVIPVPMKVAMVRGVVIPRLLFGAEVYGMNKAITESMEVLLNQVWRMVGGMNRNSTILTFAIWREMGTPPICAMAAARRARALQKCRKLRT 223
            +G +++    L FADDLV L  ++  + +   Q+  W    EM +  +KC +MV    +        +    G  +P    YT L +    NL   T+   R  +G   +  L   LR+  + +  K  +V+G+++P +L+GAEVYG     T   +V++N+  RMV G   N   LT A+WR++G  P+ A AA+R+ RA  K   LRT
Sbjct:  196 EGAIENRGAGLAFADDLVVLGATKGILRKAVVQIELWAGRWEMEINPKKCGVMVFGGDQGEKVGVTTR----GGTIPEPDSYTYLGVELDRNLSRKTMSERRRKKGLECLFMLEKNLRSPSLSIGHKTLLVKGILMPTMLYGAEVYGSIGKTTSGAQVVVNKALRMVAG---NGGALT-AVWRDLGVIPVQAAAASRQRRAWLKFPTLRT 397          
BLAST of mRNA_H-elongata_contig6504.14092.1 vs. uniprot
Match: L7JX89_TRAHO (RNA-directed DNA polymerase, Non LTR Retrotransposon (Fragment) n=1 Tax=Trachipleistophora hominis TaxID=72359 RepID=L7JX89_TRAHO)

HSP 1 Score: 94.4 bits (233), Expect = 4.010e-18
Identity = 69/254 (27.17%), Postives = 121/254 (47.64%), Query Frame = 0
Query:   16 GVKSHIPALMFADDLVALSRSRTGIERMARQVTYWTVENEMRVGIQKCELMVVNKPRSVLQQTPDQWQIAGEPVPVVSEYTNLRLRFTENLGVPTILSERVAEGKRLVDTLTPFLRTRVIPVPMKVAMVRGVVIPRLLFGAEVYGMNKAITESMEVLLNQVWRMVGGMNRNSTILTFAIWREMGTPPICAMAAARRARALQKCRKLRTWVRYLVEEPFKHKCKTWVTGMNTWMNTYAHRLAHLAIADAPEGIKE 269
            G    +P L+FADD V  + S   +      +  W  + +M + I KC LMV N      +Q   +++ A   +P V  Y  L +    NL + T++++R  + ++ +  + P +    IP+P++V +++ V+IP   FG+E+YGM+   T  ++ ++++  R       N   LT   + E+    I   AA  R RA  K R  RT +  +++  FK    TW TG   W+      L +  +    EG+K+
Sbjct:  449 GNGEQVPGLLFADDAVVFAESYDDMVHNMEILEDWCDKWKMDLNISKCGLMVFNSN----EQRAIKYKNAN--IPTVERYRYLGIPINRNLDLKTVINDRKEKAQQALMIIRPLISRIEIPLPIRVTLIKSVLIPTATFGSELYGMSSQRTAPIQRVIDKAVRCAMACPANYCRLT--AYEEIRIECIDIRAAKARTRAFIKWRNSRTTISKVMKTDFKCPKTTWYTGTARWIRRL---LKNDTLNSTQEGVKK 691          
BLAST of mRNA_H-elongata_contig6504.14092.1 vs. uniprot
Match: A0A1J5WVJ6_9MICR (Reverse transcriptase domain-containing protein n=1 Tax=Amphiamblys sp. WSBS2006 TaxID=1866961 RepID=A0A1J5WVJ6_9MICR)

HSP 1 Score: 89.4 bits (220), Expect = 1.270e-16
Identity = 63/210 (30.00%), Postives = 104/210 (49.52%), Query Frame = 0
Query:   14 QGGVKSHIPALMFADDLVALSRSRTGIERMARQVTYWTVENEMRVGIQKCELMVVNKPRSVLQQTPDQWQIAGEPVPVVSEYTNLRLRFTENLGVPTILSERVAEGKRLVDTLTPFLRTRVIPVPMKVAMVRGVVIPRLLFGAEVYGMNKAITESMEVLLNQVWRMVGGMNRNSTILTFAIWREMGTPPICAMAAARRARALQKCRKLRT 223
            +G +++    L FADDLV L  ++  + +   Q+  W    EM +  +KC +MV    +        +    G  +P    YT L +    NL   T+   R  +G   +  L   LR+  + +  K  +V+G+++P +L+GAEVYG     T   +V++N+  RM+ G   N   LT A+ R++G  P+ A AA+R+ RA  K   +RT
Sbjct:  196 EGAIENRGAGLAFADDLVVLGATKGILRKAVVQIELWAGRWEMEINPKKCGVMVFGDDQGEKVGVTTR----GGTIPEPDSYTYLGVELDRNLSRKTMSERRRKKGLECLFMLEKNLRSPSLSIGHKTLLVKGILMPTVLYGAEVYGSIGKTTSGAQVVVNKAVRMIAG---NGGALT-AVRRDLGVIPVQAAAASRQRRAWLKFPTVRT 397          
BLAST of mRNA_H-elongata_contig6504.14092.1 vs. uniprot
Match: L7JUW7_TRAHO (Putative RNA-directed DNA polymerase (Reverse transcriptase), Non LTR Retrotransposon protein (Fragment) n=1 Tax=Trachipleistophora hominis TaxID=72359 RepID=L7JUW7_TRAHO)

HSP 1 Score: 81.6 bits (200), Expect = 3.780e-14
Identity = 58/226 (25.66%), Postives = 114/226 (50.44%), Query Frame = 0
Query:   11 VRMQGGVKSHIPALMFADDLVALSRSRTGIERMARQVTYWTVENEMRVGIQKCELMVVN--KPRSVLQQTPDQWQIAGEPVPVVSEYTNLRLRFTENLGVPTILSERVAEGKRLVDTLTPFLRTRVIPVPMKVAMVRGVVIPRLLFGAEVYGMNKAITESMEVLLNQVWRMVGGMNRNSTILTFAIWREMGTPPICAMAAARRARALQKCRKLRTWVRYLVEEPFK 234
            V +Q GV+S IP L+FADD V L+ S   ++   ++++ W     + + I+KC L+V    + R++  +        G+ +PVV+ YT L      +L +  ++ +R  +  R    + PFL    +P P+K+ +V+ V++P   +G E+YGM+ +    ++ +++   + +  ++ +S+      + E+    +   AA  R  A  K +  RT    L+ + FK
Sbjct:  141 VAIQPGVRS-IPGLLFADDAVVLAESAHELQSNLQRISDWCERWRISLNIEKCGLVVFGPGEARNMCYR--------GQSLPVVASYTYLGHPLMPDLDLNVVIQDRKEKAIRAYHGMRPFLTRNFVPAPIKMLLVKSVLLPIATYGCELYGMSTSRLAHLQRVIDHALKDI--LSCSSSYCRNPAYEELRIDCVAMRAAKLRTHAFLKWKTSRTTFGELMNQTFK 355          
BLAST of mRNA_H-elongata_contig6504.14092.1 vs. uniprot
Match: A0A1U7K4Z0_9APHY (Reverse transcriptase domain-containing protein n=2 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A1U7K4Z0_9APHY)

HSP 1 Score: 79.7 bits (195), Expect = 4.060e-13
Identity = 63/224 (28.12%), Postives = 104/224 (46.43%), Query Frame = 0
Query:   25 MFADDLVALSRSRTGIERMARQVTYWTVENEMRVGIQKCELMV-VNKPRSVLQQTPDQWQIAGEPVPVVSEYTNLRLRFTENLGVPTILSE-------------RVAEGKRLVDTLTPFLRTRVIPVPMKVAMVRGVVIPRLLFGAEVYGMNKAITESMEVLLNQV--WRMVGGMNRNSTILTFAIWREMGTPPICAMAAARRARALQKC----RKLRTWVRYL 228
            M+ADDL+ L R+  G ++  R++  W     M +G+ KC +M  +       +    Q+ I    VP V  Y  L + F  +LG     +              R AEG + V  L P L  R  P+P+KV ++R +++P +L+G+E  G  +     ++ +++    W M  G   NS    F +  ++G P +    AARR R   K     +K+RTW++ L
Sbjct:  542 MYADDLLTLDRTVRGAQQTLRKIEKWARRWGMELGLPKCGVMGWITNDLDEEEFNSVQFLINAGTVPKVDRYKYLGVWFDPSLGDHRSGTSVFGGSLELHNSRFRAAEGLKAVHALRPLLLDRKCPLPIKVTLIRNLLLPLMLYGSEWTGFRQEHAAPIQRVVDMATRWAMGAGARSNS-YAGFTLSTDLGIPSVVEEMAARRTRLWVKLEAGEKKMRTWLQIL 764          
BLAST of mRNA_H-elongata_contig6504.14092.1 vs. uniprot
Match: A0A1Y1S8L6_9MICR (LIN1 n=1 Tax=Enterospora canceri TaxID=1081671 RepID=A0A1Y1S8L6_9MICR)

HSP 1 Score: 79.3 bits (194), Expect = 5.660e-13
Identity = 47/163 (28.83%), Postives = 81/163 (49.69%), Query Frame = 0
Query:   89 VPVVSEYTNLRLRFTENLGVPTILSERVAEGKRLVDTLTPFLRTRVIPVPMKVAMVRGVVIPRLLFGAEVYGMNKAITESMEVLLNQVWRMVGGMNRNSTILTFAIWREMGTPPICAMAAARRARALQKCRKLRTWVRYLVEEPFKHKCKTWVTGMNTWMNTY 251
            VP+V  YT L ++ T+ L    +    + +G + ++ L P L    +P   K+ ++   ++P LL+GAE++GMN      ++  L    RM   + RN ++    +  E GT  +   AA RR RA +K   L+TW+  L++ P+  + + W T    W   Y
Sbjct: 1104 VPIVDHYTYLGVKITKTLTPMDMSHHNIGKGIKTIEGLKPILCGTRVPTYFKLKLIHARLMPVLLYGAELWGMNTNNCRKLQQTLVGALRMAMRVGRNVSV--GRLLAETGTALVAESAAKRRHRATRKFPTLKTWIAILLKNPYHGRKRVWSTNSQQWTKHY 1264          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6504.14092.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5H7_9PHAE5.200e-7547.55Reverse transcriptase domain-containing protein n=... [more]
A0A3M2C3P5_9GAMM4.870e-3334.35Reverse transcriptase domain-containing protein n=... [more]
A0A7S3PFX4_9STRA3.220e-2035.04Hypothetical protein n=2 Tax=Aplanochytrium stocch... [more]
A0A1J5WUS4_9MICR4.460e-2032.86Reverse transcriptase domain-containing protein n=... [more]
A0A1J5WU32_9MICR5.640e-1931.43Reverse transcriptase domain-containing protein n=... [more]
L7JX89_TRAHO4.010e-1827.17RNA-directed DNA polymerase, Non LTR Retrotranspos... [more]
A0A1J5WVJ6_9MICR1.270e-1630.00Reverse transcriptase domain-containing protein n=... [more]
L7JUW7_TRAHO3.780e-1425.66Putative RNA-directed DNA polymerase (Reverse tran... [more]
A0A1U7K4Z0_9APHY4.060e-1328.13Reverse transcriptase domain-containing protein n=... [more]
A0A1Y1S8L6_9MICR5.660e-1328.83LIN1 n=1 Tax=Enterospora canceri TaxID=1081671 Rep... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR47027:SF5coord: 19..219
NoneNo IPR availablePANTHERPTHR47027FAMILY NOT NAMEDcoord: 19..219

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6504contigH-elongata_contig6504:2438..3247 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6504.14092.1mRNA_H-elongata_contig6504.14092.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig6504 1857..3247 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig6504.14092.1 ID=prot_H-elongata_contig6504.14092.1|Name=mRNA_H-elongata_contig6504.14092.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=270bp
MDGADRSGVPVRMQGGVKSHIPALMFADDLVALSRSRTGIERMARQVTYW
TVENEMRVGIQKCELMVVNKPRSVLQQTPDQWQIAGEPVPVVSEYTNLRL
RFTENLGVPTILSERVAEGKRLVDTLTPFLRTRVIPVPMKVAMVRGVVIP
RLLFGAEVYGMNKAITESMEVLLNQVWRMVGGMNRNSTILTFAIWREMGT
PPICAMAAARRARALQKCRKLRTWVRYLVEEPFKHKCKTWVTGMNTWMNT
YAHRLAHLAIADAPEGIKEA
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