prot_H-elongata_contig5100.12360.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig5100.12360.1
Unique Nameprot_H-elongata_contig5100.12360.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length271
Homology
BLAST of mRNA_H-elongata_contig5100.12360.1 vs. uniprot
Match: D7FHS8_ECTSI (SNF2 helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHS8_ECTSI)

HSP 1 Score: 175 bits (443), Expect = 6.080e-46
Identity = 132/313 (42.17%), Postives = 159/313 (50.80%), Query Frame = 0
Query:    8 QRCGSTLIICPHKIRSQWEREIRQRTKPRALKVVAYPGVRDILAVGGKASSKRQARMGRR--------------KRKNSSNANAFRVAGRAVEGTPLQQQPPGITQSGGEDWGGRDEQEENNSEGLSGLREDVSANAVVG--------------------------------AGSSSTPGPHDGEHVNEEEAGWRV-GKARDVDHESA--FALLSPEKLASYDIVLTTFDVLRAEVHHADSKFANQGSAGEXXXXXXXXXXXXXXXXXXXRVIPSPLPALKWWRVVIDEAHMVESTTQETAKMALKIPATHRY 271
            +RCGSTLIICPHKIRSQWEREIR RTK  ALKV  Y GVR+IL++G KA                          R +  +A     A   V G   +++    T + G D G R  +++      +  R+D+    V G                                A +S T     G+      +   V G   D D  S   FALLSP+ LASYD+VLTTF+VLRAEVHHA+SKFA  G+ G+                   RVIPSPLPALKWWRVV+DEAHMVESTTQETAKMALKIP THR+
Sbjct:  583 KRCGSTLIICPHKIRSQWEREIRARTKAGALKVAVYNGVREILSMGEKAKRASXXXXXXXXXXXXXXXXXXXTDSRNSDHDATNTSAANNTVSG---KRRDTSTTPAAGADQGSRTNRDQPQD---TLPRDDLDQQPVPGDXXXXXXXXXXXXXXXXXXXXXXXXXXHPVAQAAASGT-----GQEATAASSATDVSGGGSDTDSSSGDPFALLSPKNLASYDVVLTTFEVLRAEVHHAESKFA--GALGDGGSAVAVGRPSLRRKKRY-RVIPSPLPALKWWRVVVDEAHMVESTTQETAKMALKIPTTHRW 881          
BLAST of mRNA_H-elongata_contig5100.12360.1 vs. uniprot
Match: A0A6H5JYY0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYY0_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 6.180e-42
Identity = 127/332 (38.25%), Postives = 153/332 (46.08%), Query Frame = 0
Query:   10 CGSTLIICPHKIRSQWEREIRQRTKPRALKVVAYPGVRDILAVGGKASSKRQARMGRRKRKNSSNANAFRVAGRAVEGTPLQQQPPGITQSGGEDWGGRDEQEENNSEG-----LSGLREDVSA------------------NAVVGAGSSSTPGPHDGEH----------------------------------------VNEEEAGWRVGKA-------RDVDHESAFALLSPEKLASYDIVLTTFDVLRAEVHHADSKFANQGSAGEXXXXXXXXXXXXXXXXXXXRVIPSPLPALKWWRVVIDEAHMVESTTQETAKMALKIPATHRY 271
            CGSTLIICPHKIRSQW REIR RTK  ALKV  Y GVR+IL++G KA      R   ++R             R++ G+       G         G RD  ++ N  G     ++G R +                     +A+   G    P P D                                            +    G R G +               FALLSP+ LASYD+VLTTF+VLRAEVHHA+S+FA  G+ G+                   RVIPSPLPALKWWRVV+DEAHMVESTTQETAKMALKIPATHR+
Sbjct:  385 CGSTLIICPHKIRSQWAREIRARTKAGALKVAVYNGVREILSLGEKAKLASSTRRNSKRR-------------RSINGSTTPATTAGT--------GSRDSDDDANDTGTANNTVNGKRREAXXXXXXXXXXXXXXXXXQPQDALFRDGPDQQPVPGDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAASNATEGSRSGGSDAXXXXXXXXXXSDPFALLSPKNLASYDVVLTTFEVLRAEVHHAESRFA--GALGDGGSAVAVGRPSLRRKKRY-RVIPSPLPALKWWRVVVDEAHMVESTTQETAKMALKIPATHRW 692          
BLAST of mRNA_H-elongata_contig5100.12360.1 vs. uniprot
Match: A0A836C7R9_9STRA (SNF2 family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7R9_9STRA)

HSP 1 Score: 103 bits (256), Expect = 4.560e-21
Identity = 92/281 (32.74%), Postives = 126/281 (44.84%), Query Frame = 0
Query:   10 CGSTLIICPHKIRSQWEREIRQRTKPRALKVVAYPGVRDILAVGGKASSKRQARMGRRKRKNSSNANAFRVAGRAVEGTPLQQQPPGITQSGGEDWGGRDEQEENNSEGLSGLREDVSAN-------------AVVGAGSSSTPGPHDGEHVNEEEAGWRVGKARDVDHESA------FALLSPEKLASYDIVLTTFDVLRAEVHHADSKFANQGSAGEXXXXXXXXXXXXXXXXXXXRVIPSPLPALKWWRVVIDEAHMVESTTQETAKMALKIPATHRY 271
            CG+TLI+CP  I  QW +E+++ T P A+KVV YPG+ +++  G    S RQ                          +P        T  G  D    + + E  +         + A                  AG+++    H G  V +       G  +      A      +ALL P  LAS D+VLTT+DVLRAEVHHA +          XXXXXXXXX          +V+PSPL AL WWRV +DEA MVE+T  + A+MA  +PA +R+
Sbjct:  779 CGATLIVCPATILHQWRQELKRHTAPGAVKVVEYPGISEVVRRG----SMRQR-------------------------SPRPPPAAAATHDGASDAADTETEAETRTADAXXXXXXLKATNDXXXXXXXXXXXXXXAAGAAADGSAHTGSDVKQPSTEAVEGSPKAAKRALAKPVAAPYALLDPATLASCDVVLTTYDVLRAEVHHAVAXXXXXXXXXXXXXXXXXXXRTMRRARAY-KVVPSPLTALLWWRVAMDEAQMVETTVSDAAQMATLLPAVNRW 1029          
BLAST of mRNA_H-elongata_contig5100.12360.1 vs. uniprot
Match: A0A7S4PJ83_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4PJ83_9EUKA)

HSP 1 Score: 80.9 bits (198), Expect = 8.900e-15
Identity = 41/98 (41.84%), Postives = 57/98 (58.16%), Query Frame = 0
Query:  174 PEKLASYDIVLTTFDVLRAEVHHADSKFANQGSAGEXXXXXXXXXXXXXXXXXXXRVIPSPLPALKWWRVVIDEAHMVESTTQETAKMALKIPATHRY 271
            P  LASYDIVLT++DVLR E+H   +    +G                       +V PSPLP + WWR+ +DEA M+ES+T  +AKMAL++PA +R+
Sbjct:  117 PPSLASYDIVLTSYDVLRTEIHFEGNPRPLRGKK-------------------KYQVFPSPLPQILWWRICLDEAQMIESSTANSAKMALRLPAVNRW 195          
BLAST of mRNA_H-elongata_contig5100.12360.1 vs. uniprot
Match: UPI0014026C16 (E3 ubiquitin-protein ligase SHPRH-like n=1 Tax=Petromyzon marinus TaxID=7757 RepID=UPI0014026C16)

HSP 1 Score: 81.3 bits (199), Expect = 1.320e-13
Identity = 41/102 (40.20%), Postives = 60/102 (58.82%), Query Frame = 0
Query:  172 LSPEKLASYDIVLTTFDVLRAEVHHADSKFANQG--SAGEXXXXXXXXXXXXXXXXXXXRVIPSPLPALKWWRVVIDEAHMVESTTQETAKMALKIPATHRY 271
            + P KLA  D+V+TT+DVLR+E+ + D  + N+G  SAG                      +PSPL A+ WWRV +DEA MVE TT + A+MAL++ + +R+
Sbjct:  876 VQPRKLAQQDVVITTYDVLRSELSYVDLPYCNRGVGSAGGVDSLLSSEGGRRFRQGKRYMALPSPLVAVHWWRVCLDEAQMVERTTAKAAEMALRLSSVNRW 977          
BLAST of mRNA_H-elongata_contig5100.12360.1 vs. uniprot
Match: A0A8C4WVF7_EPTBU (SNF2 histone linker PHD RING helicase n=1 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4WVF7_EPTBU)

HSP 1 Score: 79.3 bits (194), Expect = 5.420e-13
Identity = 42/100 (42.00%), Postives = 60/100 (60.00%), Query Frame = 0
Query:  172 LSPEKLASYDIVLTTFDVLRAEVHHADSKFANQGSAGEXXXXXXXXXXXXXXXXXXXRVIPSPLPALKWWRVVIDEAHMVESTTQETAKMALKIPATHRY 271
            ++P  LASYDIVLTT+ VLR+E+ +AD     + SAG+                     IPSPL A++WWR+ +DEA MVE TT + A+MAL++ A + +
Sbjct:  161 IAPAVLASYDIVLTTYHVLRSELDYADIPLGGRSSAGKGVTQESRLRLTKRYM-----AIPSPLVAVEWWRLCLDEAQMVECTTAKAAEMALRLSAVNHW 255          
BLAST of mRNA_H-elongata_contig5100.12360.1 vs. uniprot
Match: A0A0B6Z6J5_9EUPU (SNF2-rel_dom domain-containing protein (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6Z6J5_9EUPU)

HSP 1 Score: 72.4 bits (176), Expect = 2.870e-12
Identity = 39/105 (37.14%), Postives = 55/105 (52.38%), Query Frame = 0
Query:  167 SAFALLSPEKLASYDIVLTTFDVLRAEVHHADSKFANQGSAGEXXXXXXXXXXXXXXXXXXXRVIPSPLPALKWWRVVIDEAHMVESTTQETAKMALKIPATHRY 271
            S    + P+ LA  DIV+TT+DVLR EV + +    N  S                         PSP+ A++WWR+ +DEA MVE  T +TA+MALK+ A +R+
Sbjct:   27 SKLGYIQPQTLAQQDIVITTYDVLRKEVDYVNLPHTNSESGRRFRHPKRFL------------ATPSPMVAVEWWRICLDEAQMVECVTTKTAEMALKLKAVNRW 119          
BLAST of mRNA_H-elongata_contig5100.12360.1 vs. uniprot
Match: UPI000C6E503C (E3 ubiquitin-protein ligase SHPRH-like n=1 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6E503C)

HSP 1 Score: 77.0 bits (188), Expect = 3.530e-12
Identity = 40/100 (40.00%), Postives = 57/100 (57.00%), Query Frame = 0
Query:  172 LSPEKLASYDIVLTTFDVLRAEVHHADSKFANQGSAGEXXXXXXXXXXXXXXXXXXXRVIPSPLPALKWWRVVIDEAHMVESTTQETAKMALKIPATHRY 271
            + P  LA YDIVLTT+ VLR E+++ D   +N  S                        IPSPL +++WWR+ +DEA MVESTT +TA+MA ++ + HR+
Sbjct:  660 IPPPVLADYDIVLTTYSVLRRELNYVDLPHSNDDSGRRFRNPKRFM------------TIPSPLLSIEWWRICLDEAQMVESTTTKTAEMAQRLTSVHRW 747          
BLAST of mRNA_H-elongata_contig5100.12360.1 vs. uniprot
Match: UPI0018D8F32C (E3 ubiquitin-protein ligase SHPRH-like isoform X1 n=2 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D8F32C)

HSP 1 Score: 75.9 bits (185), Expect = 8.770e-12
Identity = 38/100 (38.00%), Postives = 56/100 (56.00%), Query Frame = 0
Query:  172 LSPEKLASYDIVLTTFDVLRAEVHHADSKFANQGSAGEXXXXXXXXXXXXXXXXXXXRVIPSPLPALKWWRVVIDEAHMVESTTQETAKMALKIPATHRY 271
            L P+ LA +DIV+TT+D LR E+++ D    N  +                        +PSPLPA++WWRV +DEA MVE  T + A+MAL++ A +R+
Sbjct:  944 LQPQMLAEHDIVITTYDTLRTELNYVDLPHTNSDNGRRLRHAKRYM------------AVPSPLPAVEWWRVCLDEAQMVECPTAKVAEMALRLTAVNRW 1031          
BLAST of mRNA_H-elongata_contig5100.12360.1 vs. uniprot
Match: T1JC89_STRMM (Uncharacterized protein n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1JC89_STRMM)

HSP 1 Score: 75.5 bits (184), Expect = 1.150e-11
Identity = 37/103 (35.92%), Postives = 57/103 (55.34%), Query Frame = 0
Query:  169 FALLSPEKLASYDIVLTTFDVLRAEVHHADSKFANQGSAGEXXXXXXXXXXXXXXXXXXXRVIPSPLPALKWWRVVIDEAHMVESTTQETAKMALKIPATHRY 271
            F  + P KLA YDIV+TT+++LR E+H+ D   +N  +                        + SPL A++WWR+ +DEA MVE+ +  TA MAL++ A +R+
Sbjct:  547 FGFIQPPKLADYDIVITTYEILRRELHYVDLPHSNSETGRRFRKPKRFMP------------VSSPLTAVEWWRICLDEAQMVETVSTRTADMALRLHAVNRW 637          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5100.12360.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHS8_ECTSI6.080e-4642.17SNF2 helicase n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A6H5JYY0_9PHAE6.180e-4238.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C7R9_9STRA4.560e-2132.74SNF2 family N-terminal domain-containing protein n... [more]
A0A7S4PJ83_9EUKA8.900e-1541.84Hypothetical protein (Fragment) n=1 Tax=Paramoeba ... [more]
UPI0014026C161.320e-1340.20E3 ubiquitin-protein ligase SHPRH-like n=1 Tax=Pet... [more]
A0A8C4WVF7_EPTBU5.420e-1342.00SNF2 histone linker PHD RING helicase n=1 Tax=Epta... [more]
A0A0B6Z6J5_9EUPU2.870e-1237.14SNF2-rel_dom domain-containing protein (Fragment) ... [more]
UPI000C6E503C3.530e-1240.00E3 ubiquitin-protein ligase SHPRH-like n=1 Tax=Cen... [more]
UPI0018D8F32C8.770e-1238.00E3 ubiquitin-protein ligase SHPRH-like isoform X1 ... [more]
T1JC89_STRMM1.150e-1135.92Uncharacterized protein n=1 Tax=Strigamia maritima... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000330SNF2-related, N-terminal domainPFAMPF00176SNF2_Ncoord: 8..270
e-value: 4.4E-24
score: 84.9
NoneNo IPR availablePANTHERPTHR45865FAMILY NOT NAMEDcoord: 9..270
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 176..270

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5100contigH-elongata_contig5100:1178..3531 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5100.12360.1mRNA_H-elongata_contig5100.12360.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig5100 1178..3531 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig5100.12360.1 ID=prot_H-elongata_contig5100.12360.1|Name=mRNA_H-elongata_contig5100.12360.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=271bp
MVYVCGRQRCGSTLIICPHKIRSQWEREIRQRTKPRALKVVAYPGVRDIL
AVGGKASSKRQARMGRRKRKNSSNANAFRVAGRAVEGTPLQQQPPGITQS
GGEDWGGRDEQEENNSEGLSGLREDVSANAVVGAGSSSTPGPHDGEHVNE
EEAGWRVGKARDVDHESAFALLSPEKLASYDIVLTTFDVLRAEVHHADSK
FANQGSAGEGDGDGSRASVPRLRKRKRYRVIPSPLPALKWWRVVIDEAHM
VESTTQETAKMALKIPATHRY
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000330SNF2_N
IPR027417P-loop_NTPase