mRNA_H-elongata_contig5100.12360.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig5100.12360.1 vs. uniprot
Match: D7FHS8_ECTSI (SNF2 helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHS8_ECTSI) HSP 1 Score: 175 bits (443), Expect = 6.080e-46 Identity = 132/313 (42.17%), Postives = 159/313 (50.80%), Query Frame = 1
Query: 22 QRCGSTLIICPHKIRSQWEREIRQRTKPRALKVVAYPGVRDILAVGGKASSKRQARMGRR--------------KRKNSSNANAFRVAGRAVEGTPLQQQPPGITQSGGEDWGGRDEQEENNSEGLSGLREDVSANAVVG--------------------------------AGSSSTPGPHDGEHVNEEEAGWRV-GKARDVDHESA--FALLSPEKLASYDIVLTTFDVLRAEVHHADSKFANQGSAGEXXXXXXXXXXXXXXXXXXXRVIPSPLPALKWWRVVIDEAHMVESTTQETAKMALKIPATHRY 813
+RCGSTLIICPHKIRSQWEREIR RTK ALKV Y GVR+IL++G KA R + +A A V G +++ T + G D G R +++ + R+D+ V G A +S T G+ + V G D D S FALLSP+ LASYD+VLTTF+VLRAEVHHA+SKFA G+ G+ RVIPSPLPALKWWRVV+DEAHMVESTTQETAKMALKIP THR+
Sbjct: 583 KRCGSTLIICPHKIRSQWEREIRARTKAGALKVAVYNGVREILSMGEKAKRASXXXXXXXXXXXXXXXXXXXTDSRNSDHDATNTSAANNTVSG---KRRDTSTTPAAGADQGSRTNRDQPQD---TLPRDDLDQQPVPGDXXXXXXXXXXXXXXXXXXXXXXXXXXHPVAQAAASGT-----GQEATAASSATDVSGGGSDTDSSSGDPFALLSPKNLASYDVVLTTFEVLRAEVHHAESKFA--GALGDGGSAVAVGRPSLRRKKRY-RVIPSPLPALKWWRVVVDEAHMVESTTQETAKMALKIPTTHRW 881
BLAST of mRNA_H-elongata_contig5100.12360.1 vs. uniprot
Match: A0A6H5JYY0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYY0_9PHAE) HSP 1 Score: 163 bits (413), Expect = 6.180e-42 Identity = 127/332 (38.25%), Postives = 153/332 (46.08%), Query Frame = 1
Query: 28 CGSTLIICPHKIRSQWEREIRQRTKPRALKVVAYPGVRDILAVGGKASSKRQARMGRRKRKNSSNANAFRVAGRAVEGTPLQQQPPGITQSGGEDWGGRDEQEENNSEG-----LSGLREDVSA------------------NAVVGAGSSSTPGPHDGEH----------------------------------------VNEEEAGWRVGKA-------RDVDHESAFALLSPEKLASYDIVLTTFDVLRAEVHHADSKFANQGSAGEXXXXXXXXXXXXXXXXXXXRVIPSPLPALKWWRVVIDEAHMVESTTQETAKMALKIPATHRY 813
CGSTLIICPHKIRSQW REIR RTK ALKV Y GVR+IL++G KA R ++R R++ G+ G G RD ++ N G ++G R + +A+ G P P D + G R G + FALLSP+ LASYD+VLTTF+VLRAEVHHA+S+FA G+ G+ RVIPSPLPALKWWRVV+DEAHMVESTTQETAKMALKIPATHR+
Sbjct: 385 CGSTLIICPHKIRSQWAREIRARTKAGALKVAVYNGVREILSLGEKAKLASSTRRNSKRR-------------RSINGSTTPATTAGT--------GSRDSDDDANDTGTANNTVNGKRREAXXXXXXXXXXXXXXXXXQPQDALFRDGPDQQPVPGDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAASNATEGSRSGGSDAXXXXXXXXXXSDPFALLSPKNLASYDVVLTTFEVLRAEVHHAESRFA--GALGDGGSAVAVGRPSLRRKKRY-RVIPSPLPALKWWRVVVDEAHMVESTTQETAKMALKIPATHRW 692
BLAST of mRNA_H-elongata_contig5100.12360.1 vs. uniprot
Match: A0A836C7R9_9STRA (SNF2 family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7R9_9STRA) HSP 1 Score: 103 bits (256), Expect = 4.560e-21 Identity = 92/281 (32.74%), Postives = 126/281 (44.84%), Query Frame = 1
Query: 28 CGSTLIICPHKIRSQWEREIRQRTKPRALKVVAYPGVRDILAVGGKASSKRQARMGRRKRKNSSNANAFRVAGRAVEGTPLQQQPPGITQSGGEDWGGRDEQEENNSEGLSGLREDVSAN-------------AVVGAGSSSTPGPHDGEHVNEEEAGWRVGKARDVDHESA------FALLSPEKLASYDIVLTTFDVLRAEVHHADSKFANQGSAGEXXXXXXXXXXXXXXXXXXXRVIPSPLPALKWWRVVIDEAHMVESTTQETAKMALKIPATHRY 813
CG+TLI+CP I QW +E+++ T P A+KVV YPG+ +++ G S RQ +P T G D + + E + + A AG+++ H G V + G + A +ALL P LAS D+VLTT+DVLRAEVHHA + XXXXXXXXX +V+PSPL AL WWRV +DEA MVE+T + A+MA +PA +R+
Sbjct: 779 CGATLIVCPATILHQWRQELKRHTAPGAVKVVEYPGISEVVRRG----SMRQR-------------------------SPRPPPAAAATHDGASDAADTETEAETRTADAXXXXXXLKATNDXXXXXXXXXXXXXXAAGAAADGSAHTGSDVKQPSTEAVEGSPKAAKRALAKPVAAPYALLDPATLASCDVVLTTYDVLRAEVHHAVAXXXXXXXXXXXXXXXXXXXRTMRRARAY-KVVPSPLTALLWWRVAMDEAQMVETTVSDAAQMATLLPAVNRW 1029
BLAST of mRNA_H-elongata_contig5100.12360.1 vs. uniprot
Match: A0A7S4PJ83_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4PJ83_9EUKA) HSP 1 Score: 80.9 bits (198), Expect = 8.900e-15 Identity = 41/98 (41.84%), Postives = 57/98 (58.16%), Query Frame = 1
Query: 520 PEKLASYDIVLTTFDVLRAEVHHADSKFANQGSAGEXXXXXXXXXXXXXXXXXXXRVIPSPLPALKWWRVVIDEAHMVESTTQETAKMALKIPATHRY 813
P LASYDIVLT++DVLR E+H + +G +V PSPLP + WWR+ +DEA M+ES+T +AKMAL++PA +R+
Sbjct: 117 PPSLASYDIVLTSYDVLRTEIHFEGNPRPLRGKK-------------------KYQVFPSPLPQILWWRICLDEAQMIESSTANSAKMALRLPAVNRW 195
BLAST of mRNA_H-elongata_contig5100.12360.1 vs. uniprot
Match: UPI0014026C16 (E3 ubiquitin-protein ligase SHPRH-like n=1 Tax=Petromyzon marinus TaxID=7757 RepID=UPI0014026C16) HSP 1 Score: 81.3 bits (199), Expect = 1.320e-13 Identity = 41/102 (40.20%), Postives = 60/102 (58.82%), Query Frame = 1
Query: 514 LSPEKLASYDIVLTTFDVLRAEVHHADSKFANQG--SAGEXXXXXXXXXXXXXXXXXXXRVIPSPLPALKWWRVVIDEAHMVESTTQETAKMALKIPATHRY 813
+ P KLA D+V+TT+DVLR+E+ + D + N+G SAG +PSPL A+ WWRV +DEA MVE TT + A+MAL++ + +R+
Sbjct: 876 VQPRKLAQQDVVITTYDVLRSELSYVDLPYCNRGVGSAGGVDSLLSSEGGRRFRQGKRYMALPSPLVAVHWWRVCLDEAQMVERTTAKAAEMALRLSSVNRW 977
BLAST of mRNA_H-elongata_contig5100.12360.1 vs. uniprot
Match: A0A8C4WVF7_EPTBU (SNF2 histone linker PHD RING helicase n=1 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4WVF7_EPTBU) HSP 1 Score: 79.3 bits (194), Expect = 5.420e-13 Identity = 42/100 (42.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query: 514 LSPEKLASYDIVLTTFDVLRAEVHHADSKFANQGSAGEXXXXXXXXXXXXXXXXXXXRVIPSPLPALKWWRVVIDEAHMVESTTQETAKMALKIPATHRY 813
++P LASYDIVLTT+ VLR+E+ +AD + SAG+ IPSPL A++WWR+ +DEA MVE TT + A+MAL++ A + +
Sbjct: 161 IAPAVLASYDIVLTTYHVLRSELDYADIPLGGRSSAGKGVTQESRLRLTKRYM-----AIPSPLVAVEWWRLCLDEAQMVECTTAKAAEMALRLSAVNHW 255
BLAST of mRNA_H-elongata_contig5100.12360.1 vs. uniprot
Match: A0A0B6Z6J5_9EUPU (SNF2-rel_dom domain-containing protein (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6Z6J5_9EUPU) HSP 1 Score: 72.4 bits (176), Expect = 2.870e-12 Identity = 39/105 (37.14%), Postives = 55/105 (52.38%), Query Frame = 1
Query: 499 SAFALLSPEKLASYDIVLTTFDVLRAEVHHADSKFANQGSAGEXXXXXXXXXXXXXXXXXXXRVIPSPLPALKWWRVVIDEAHMVESTTQETAKMALKIPATHRY 813
S + P+ LA DIV+TT+DVLR EV + + N S PSP+ A++WWR+ +DEA MVE T +TA+MALK+ A +R+
Sbjct: 27 SKLGYIQPQTLAQQDIVITTYDVLRKEVDYVNLPHTNSESGRRFRHPKRFL------------ATPSPMVAVEWWRICLDEAQMVECVTTKTAEMALKLKAVNRW 119
BLAST of mRNA_H-elongata_contig5100.12360.1 vs. uniprot
Match: UPI000C6E503C (E3 ubiquitin-protein ligase SHPRH-like n=1 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6E503C) HSP 1 Score: 77.0 bits (188), Expect = 3.530e-12 Identity = 40/100 (40.00%), Postives = 57/100 (57.00%), Query Frame = 1
Query: 514 LSPEKLASYDIVLTTFDVLRAEVHHADSKFANQGSAGEXXXXXXXXXXXXXXXXXXXRVIPSPLPALKWWRVVIDEAHMVESTTQETAKMALKIPATHRY 813
+ P LA YDIVLTT+ VLR E+++ D +N S IPSPL +++WWR+ +DEA MVESTT +TA+MA ++ + HR+
Sbjct: 660 IPPPVLADYDIVLTTYSVLRRELNYVDLPHSNDDSGRRFRNPKRFM------------TIPSPLLSIEWWRICLDEAQMVESTTTKTAEMAQRLTSVHRW 747
BLAST of mRNA_H-elongata_contig5100.12360.1 vs. uniprot
Match: UPI0018D8F32C (E3 ubiquitin-protein ligase SHPRH-like isoform X1 n=2 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D8F32C) HSP 1 Score: 75.9 bits (185), Expect = 8.770e-12 Identity = 38/100 (38.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query: 514 LSPEKLASYDIVLTTFDVLRAEVHHADSKFANQGSAGEXXXXXXXXXXXXXXXXXXXRVIPSPLPALKWWRVVIDEAHMVESTTQETAKMALKIPATHRY 813
L P+ LA +DIV+TT+D LR E+++ D N + +PSPLPA++WWRV +DEA MVE T + A+MAL++ A +R+
Sbjct: 944 LQPQMLAEHDIVITTYDTLRTELNYVDLPHTNSDNGRRLRHAKRYM------------AVPSPLPAVEWWRVCLDEAQMVECPTAKVAEMALRLTAVNRW 1031
BLAST of mRNA_H-elongata_contig5100.12360.1 vs. uniprot
Match: T1JC89_STRMM (Uncharacterized protein n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1JC89_STRMM) HSP 1 Score: 75.5 bits (184), Expect = 1.150e-11 Identity = 37/103 (35.92%), Postives = 57/103 (55.34%), Query Frame = 1
Query: 505 FALLSPEKLASYDIVLTTFDVLRAEVHHADSKFANQGSAGEXXXXXXXXXXXXXXXXXXXRVIPSPLPALKWWRVVIDEAHMVESTTQETAKMALKIPATHRY 813
F + P KLA YDIV+TT+++LR E+H+ D +N + + SPL A++WWR+ +DEA MVE+ + TA MAL++ A +R+
Sbjct: 547 FGFIQPPKLADYDIVITTYEILRRELHYVDLPHSNSETGRRFRKPKRFMP------------VSSPLTAVEWWRICLDEAQMVETVSTRTADMALRLHAVNRW 637 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5100.12360.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig5100.12360.1 >prot_H-elongata_contig5100.12360.1 ID=prot_H-elongata_contig5100.12360.1|Name=mRNA_H-elongata_contig5100.12360.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=271bp MVYVCGRQRCGSTLIICPHKIRSQWEREIRQRTKPRALKVVAYPGVRDILback to top mRNA from alignment at H-elongata_contig5100:1178..3531- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig5100.12360.1 ID=mRNA_H-elongata_contig5100.12360.1|Name=mRNA_H-elongata_contig5100.12360.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2354bp|location=Sequence derived from alignment at H-elongata_contig5100:1178..3531- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig5100:1178..3531- >mRNA_H-elongata_contig5100.12360.1 ID=mRNA_H-elongata_contig5100.12360.1|Name=mRNA_H-elongata_contig5100.12360.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1626bp|location=Sequence derived from alignment at H-elongata_contig5100:1178..3531- (Himanthalia elongata Himel1 dioecious)back to top |