prot_H-elongata_contig47373.11852.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig47373.11852.1
Unique Nameprot_H-elongata_contig47373.11852.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length122
Homology
BLAST of mRNA_H-elongata_contig47373.11852.1 vs. uniprot
Match: A0A6H5J7P7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7P7_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 1.550e-14
Identity = 46/126 (36.51%), Postives = 71/126 (56.35%), Query Frame = 0
Query:    2 KDWEILQLDVGMAYLEADVKYELYIELPEDYRDFCDQMGRLQNAIYGLVHAGLLWSKRFSAKLAARGFEQYLVNPCVTAR----KIRRIIVIYVDDLLVANEAKRGERQEMKDPCS---PIKVLGE 120
            K  ++ Q DV  AY+ A +K E+Y+  PE       ++ +++ A+YGL  +G  W    +  L   G+EQ  V+PCV  +    ++  +IVIYVDD+LVA  A  GER+E+    +   P+K LGE
Sbjct:  248 KGKKLAQWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWWFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVA--ADEGEREELFASLNKKFPVKDLGE 371          
BLAST of mRNA_H-elongata_contig47373.11852.1 vs. uniprot
Match: A0A6H5K3C5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3C5_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 2.970e-14
Identity = 44/127 (34.65%), Postives = 70/127 (55.12%), Query Frame = 0
Query:    2 KDWEILQLDVGMAYLEADVKYELYIELPEDYRDFCDQMGRLQNAIYGLVHAGLLWSKRFSAKLAARGFEQYLVNPCVTAR----KIRRIIVIYVDDLLVANEAKRGERQEMKDPCS---PIKVLGEV 121
            K  ++   DV  AY+ A +K E+Y+  PE       ++ +++ A+YGL  +G  W    +  L   G+EQ  V+PCV  +    ++  +IVIYVDD+LVA  A  GER+E+    +   P+K+ G V
Sbjct:  562 KGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVA--ADEGEREELFASLNKKFPVKIWGSV 686          
BLAST of mRNA_H-elongata_contig47373.11852.1 vs. uniprot
Match: A0A6H5JI74_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI74_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 4.170e-14
Identity = 45/126 (35.71%), Postives = 69/126 (54.76%), Query Frame = 0
Query:    2 KDWEILQLDVGMAYLEADVKYELYIELPEDYRDFCDQMGRLQNAIYGLVHAGLLWSKRFSAKLAARGFEQYLVNPCVTAR----KIRRIIVIYVDDLLVANEAKRGERQEMKDPCS---PIKVLGE 120
            K  ++   DV  AY+ A +K E+Y+  PE       ++ +++ A+YGL   G  W    +  L   G+EQ  V+PCV  +    ++  +IVIYVDD+LVA  A  GER+E+    +   P+K LGE
Sbjct:  604 KGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQGGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVA--ADEGEREELFASLNKKFPVKDLGE 727          
BLAST of mRNA_H-elongata_contig47373.11852.1 vs. uniprot
Match: A0A6H5KAM7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM7_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 5.500e-14
Identity = 46/126 (36.51%), Postives = 70/126 (55.56%), Query Frame = 0
Query:    2 KDWEILQLDVGMAYLEADVKYELYIELPEDYRDFCDQMGRLQNAIYGLVHAGLLWSKRFSAKLAARGFEQYLVNPCVTAR----KIRRIIVIYVDDLLVANEAKRGERQEM---KDPCSPIKVLGE 120
            K  ++   DV  AY+ A +K ELY+  P        ++  +++A+YGL  +G  W    +  L   G+EQY V+PCV  +    ++  +IVIYVDD+LVA  A  G R+E+    +  SP+K LGE
Sbjct:  330 KGKKLAHWDVKQAYIHAKLKDELYLRFPGGCGSMSGKVVNVESALYGLKQSGREWGFEAADALIEDGYEQYRVDPCVFRKVVDGEVVGLIVIYVDDILVA--ADEGGREELFASLNKKSPVKDLGE 453          
BLAST of mRNA_H-elongata_contig47373.11852.1 vs. uniprot
Match: A0A6H5JRB0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRB0_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 7.410e-14
Identity = 45/126 (35.71%), Postives = 71/126 (56.35%), Query Frame = 0
Query:    2 KDWEILQLDVGMAYLEADVKYELYIELPEDYRDFCDQMGRLQNAIYGLVHAGLLWSKRFSAKLAARGFEQYLVNPCVTAR----KIRRIIVIYVDDLLVANEAKRGERQEM---KDPCSPIKVLGE 120
            K  ++   DV  AY+ A +K E+Y+  PE       ++ ++++A+YGL  +G  W    +  L   G+EQ  V+PCV  +    ++  +IVIYVDD+LVA  A  GER+E+    +   P+K LGE
Sbjct:  212 KGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVEHALYGLKQSGREWGFEAADALIENGYEQCGVDPCVFRKVVDGEVVGLIVIYVDDILVA--ADEGEREELFASPNKKFPMKDLGE 335          
BLAST of mRNA_H-elongata_contig47373.11852.1 vs. uniprot
Match: A0A6H5JC05_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC05_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 7.430e-14
Identity = 40/110 (36.36%), Postives = 62/110 (56.36%), Query Frame = 0
Query:    2 KDWEILQLDVGMAYLEADVKYELYIELPEDYRDFCDQMGRLQNAIYGLVHAGLLWSKRFSAKLAARGFEQYLVNPCVTAR----KIRRIIVIYVDDLLVANEAKRGERQE 107
            K  ++   DV  AY+ A +K E+Y+  PE       ++ +++ A+YGL  +G  W    +  L   G+EQ  V+PCV  +    ++  +IVIYVDD+LVA  A  GER+E
Sbjct:   37 KGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVA--ADEGEREE 144          
BLAST of mRNA_H-elongata_contig47373.11852.1 vs. uniprot
Match: A0A6H5K1I0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1I0_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 7.740e-14
Identity = 44/126 (34.92%), Postives = 70/126 (55.56%), Query Frame = 0
Query:    2 KDWEILQLDVGMAYLEADVKYELYIELPEDYRDFCDQMGRLQNAIYGLVHAGLLWSKRFSAKLAARGFEQYLVNPCVTAR----KIRRIIVIYVDDLLVANEAKRGERQEMKDPCS---PIKVLGE 120
            K  ++   DV  AY+ A +K E+Y+  PE       ++ +++ A+YGL  +G  W    +  L   G+EQ  V+PCV  +    ++  +IV+YVDD+LVA  A  GER+E+    +   P+K LGE
Sbjct:  463 KGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVMYVDDILVA--ADEGEREELFASLNKKFPVKDLGE 586          
BLAST of mRNA_H-elongata_contig47373.11852.1 vs. uniprot
Match: A0A6H5JXU1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXU1_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 8.580e-14
Identity = 43/126 (34.13%), Postives = 70/126 (55.56%), Query Frame = 0
Query:    2 KDWEILQLDVGMAYLEADVKYELYIELPEDYRDFCDQMGRLQNAIYGLVHAGLLWSKRFSAKLAARGFEQYLVNPCVTAR----KIRRIIVIYVDDLLVANEAKRGERQEMKDPCS---PIKVLGE 120
            K  ++   DV  AY+ A ++ E+Y+  PE       ++ +++ A+YGL  +G  W    +  L   G+EQ  V+PCV  +    ++  +IVIYVDD+LVA  A  G+R+E+    +   P+K LGE
Sbjct:   37 KGKKLAHWDVKQAYIHAKLREEIYLSFPEGCSSMSGKVVKIERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVA--ADEGDREELFASLNKKFPVKDLGE 160          
BLAST of mRNA_H-elongata_contig47373.11852.1 vs. uniprot
Match: A0A6H5JXE8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXE8_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 1.320e-13
Identity = 44/126 (34.92%), Postives = 70/126 (55.56%), Query Frame = 0
Query:    2 KDWEILQLDVGMAYLEADVKYELYIELPEDYRDFCDQMGRLQNAIYGLVHAGLLWSKRFSAKLAARGFEQYLVNPCVTAR----KIRRIIVIYVDDLLVANEAKRGERQEMKDPCS---PIKVLGE 120
            K  ++   DV  AY+ A ++ E+Y+  PE  R    ++ +++ A+YG   +G  W    +  L   G+EQ  V+PCV  +    ++  +IVIYVDD+LVA  A  GER+E+    +   P+K LGE
Sbjct:  120 KGKKLAHWDVKQAYIHAKLEEEIYLRFPEGCRGMSGKVVKVERALYGPKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVA--ADEGEREELFASLNKKVPVKDLGE 243          
BLAST of mRNA_H-elongata_contig47373.11852.1 vs. uniprot
Match: A0A6H5KF18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF18_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 1.400e-13
Identity = 43/126 (34.13%), Postives = 70/126 (55.56%), Query Frame = 0
Query:    2 KDWEILQLDVGMAYLEADVKYELYIELPEDYRDFCDQMGRLQNAIYGLVHAGLLWSKRFSAKLAARGFEQYLVNPCVTAR----KIRRIIVIYVDDLLVANEAKRGERQEMKDPCS---PIKVLGE 120
            K  ++   DV  AY+ A +K E+Y+  PE       ++ +++ A+YGL  +G  W    +  L   G+EQ  V+PCV  +    ++  +IVIYVDD++VA  A  GER+E+    +   P+K +GE
Sbjct:  317 KGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDIIVA--ADEGEREELFASLNKKFPVKDVGE 440          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47373.11852.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J7P7_9PHAE1.550e-1436.51Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K3C5_9PHAE2.970e-1434.65Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JI74_9PHAE4.170e-1435.71Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KAM7_9PHAE5.500e-1436.51Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JRB0_9PHAE7.410e-1435.71Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JC05_9PHAE7.430e-1436.36Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1I0_9PHAE7.740e-1434.92Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JXU1_9PHAE8.580e-1434.13Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JXE8_9PHAE1.320e-1334.92Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KF18_9PHAE1.400e-1334.13Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 2..100
e-value: 1.9E-15
score: 57.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47373contigH-elongata_contig47373:670..1046 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47373.11852.1mRNA_H-elongata_contig47373.11852.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig47373 586..1374 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig47373.11852.1 ID=prot_H-elongata_contig47373.11852.1|Name=mRNA_H-elongata_contig47373.11852.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=122bp
MKDWEILQLDVGMAYLEADVKYELYIELPEDYRDFCDQMGRLQNAIYGLV
HAGLLWSKRFSAKLAARGFEQYLVNPCVTARKIRRIIVIYVDDLLVANEA
KRGERQEMKDPCSPIKVLGEV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2