mRNA_H-elongata_contig47373.11852.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig47373.11852.1 vs. uniprot
Match: A0A284QR88_ARMOS (Uncharacterized protein n=2 Tax=Armillaria TaxID=47424 RepID=A0A284QR88_ARMOS) HSP 1 Score: 109 bits (273), Expect = 1.760e-23 Identity = 67/175 (38.29%), Postives = 97/175 (55.43%), Query Frame = 1
Query: 1 QIKGIPYNESASPKQSQASIRVVLGIAAMKDWEILQLDVGMAYLEADVKYELYIELPEDYRDFCDQMGRLQNAIYGLVHAGLLWSKRFSAKLAARGFEQYLVNPCVTARKIRR----IIVIYVDDLLVANEA------KRGERQEMKDPCSPIKVLGEV*FYLGCHITRER*NLT 495
QI G+ Y E+ +P S+R LGIAA+KD EI Q+DV AYL +++ E+Y+ PE Y D ++ RL+ +YGL +G W++ F KL + GF + + CV R IR II ++VDDLL+ +E +GE + D +K LGE +G I R+R N T
Sbjct: 953 QIPGVDYTETFAPVVRLESVRAALGIAAIKDLEISQMDVKGAYLNGELEEEIYMRQPEGYDDGSGRVCRLRKTLYGLKQSGREWNREFDRKLTSIGFSKLEADHCVYKR-IREGRMTIITVWVDDLLIFSETIEDMMETKGELHNLFD----VKDLGEPKKIIGIEIKRDRENGT 1122
BLAST of mRNA_H-elongata_contig47373.11852.1 vs. uniprot
Match: A0A284R853_ARMOS (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Armillaria ostoyae TaxID=47428 RepID=A0A284R853_ARMOS) HSP 1 Score: 108 bits (270), Expect = 1.900e-23 Identity = 67/175 (38.29%), Postives = 96/175 (54.86%), Query Frame = 1
Query: 1 QIKGIPYNESASPKQSQASIRVVLGIAAMKDWEILQLDVGMAYLEADVKYELYIELPEDYRDFCDQMGRLQNAIYGLVHAGLLWSKRFSAKLAARGFEQYLVNPCVTARKIRR----IIVIYVDDLLVANEA------KRGERQEMKDPCSPIKVLGEV*FYLGCHITRER*NLT 495
QI G+ YNE+ +P S+ LGIAA+KD EI Q+DV AYL +++ E+Y+ PE Y D ++ RL+ +YGL +G W+ F KL + GF + + CV R IR II ++VDDLL+ +E +GE + D +K LGE +G I R+R N T
Sbjct: 46 QIPGVDYNETFAPVVRLESVHAALGIAAIKDLEISQMDVKGAYLNGELEEEIYMRQPEGYDDGSGRVCRLRKTLYGLKQSGCEWNWEFDRKLTSIGFSKLEADHCVYKR-IREGRMTIITVWVDDLLIFSETIEDMMETKGELHNLFD----VKDLGEPKKIIGIEIKRDRENGT 215
BLAST of mRNA_H-elongata_contig47373.11852.1 vs. uniprot
Match: A0A6H5GI29_9HEMI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GI29_9HEMI) HSP 1 Score: 107 bits (268), Expect = 6.950e-23 Identity = 57/167 (34.13%), Postives = 98/167 (58.68%), Query Frame = 1
Query: 1 QIKGIPYNESASPKQSQASIRVVLGIAAMKDWEILQLDVGMAYLEADVKYELYIELPEDYRDFCDQMGRLQNAIYGLVHAGLLWSKRFSAKLAARGFEQYLVNPCVTARKIRRIIVI---YVDDLLVANEAKRGERQEMKDPCS---PIKVLGEV*FYLGCHITRER 483
Q+ G+ + E+ SP +S+R ++ +AA+KDW+I LDV AYL D+ E+Y+ P ++ + Q+ RL+ A+YGL AG W+++ + LA F + +PC+ R IVI +VDD++V ++ GE+ ++K + +K LG + LG ++TR+R
Sbjct: 297 QVPGLDFQETYSPVVKYSSLRFLMSMAAVKDWDIDHLDVKTAYLYGDLNEEIYVRPPANFSEPDGQVWRLKKAVYGLKQAGRCWNEKITEVLAQMKFHRSKSDPCIFVRNTESAIVIVALWVDDVIVFSD-NAGEKSKVKSSLAHHFEMKDLGPIHRCLGMNVTRDR 462
BLAST of mRNA_H-elongata_contig47373.11852.1 vs. uniprot
Match: A0A6H5GGZ1_9HEMI (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GGZ1_9HEMI) HSP 1 Score: 107 bits (268), Expect = 8.050e-23 Identity = 57/167 (34.13%), Postives = 98/167 (58.68%), Query Frame = 1
Query: 1 QIKGIPYNESASPKQSQASIRVVLGIAAMKDWEILQLDVGMAYLEADVKYELYIELPEDYRDFCDQMGRLQNAIYGLVHAGLLWSKRFSAKLAARGFEQYLVNPCVTARKIRRIIVI---YVDDLLVANEAKRGERQEMKDPCS---PIKVLGEV*FYLGCHITRER 483
Q+ G+ + E+ SP +S+R ++ +AA+KDW+I LDV AYL D+ E+Y+ P ++ + Q+ RL+ A+YGL AG W+++ + LA F + +PC+ R IVI +VDD++V ++ GE+ ++K + +K LG + LG ++TR+R
Sbjct: 902 QVPGLDFQETYSPVVKYSSLRFLMSMAAVKDWDIDHLDVKTAYLYGDLNEEIYVRPPANFSEPDGQVWRLKKAVYGLKQAGRCWNEKITEVLAQMKFHRSKSDPCIFVRNTESAIVIVALWVDDVIVFSD-NAGEKSKVKSSLAHHFEMKDLGPIHRCLGMNVTRDR 1067
BLAST of mRNA_H-elongata_contig47373.11852.1 vs. uniprot
Match: A0A401GXA0_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GXA0_9APHY) HSP 1 Score: 100 bits (248), Expect = 7.510e-22 Identity = 55/166 (33.13%), Postives = 92/166 (55.42%), Query Frame = 1
Query: 1 QIKGIPYNESASPKQSQASIRVVLGIAAMKDWEILQLDVGMAYLEADVKYELYIELPEDYRDFCDQMGRLQNAIYGLVHAGLLWSKRFSAKLAARGFEQYLVNPCVTARKIR---RIIVIYVDDLLVANEAKRGERQEMKDPCSPIKV--LGEV*FYLGCHITRER 483
QI G+ + E+ +P SIR +L +A + +WEI Q+DV AYL D++ E+Y+ PE + D + RL +YGL +G W+++ KL G++Q +PCV ++ + +II ++VDDLL+ + + + +D +V LGE +G I R+R
Sbjct: 46 QIPGMDFLETFAPVVHLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFNDGSGHVCRLHKTLYGLKQSGHKWNRKLHRKLTELGYKQLEADPCVYLQEQKGEVQIITVWVDDLLLFTNSPKLMEELKRDLQDLFEVTDLGEPQKIIGFEIERDR 211
BLAST of mRNA_H-elongata_contig47373.11852.1 vs. uniprot
Match: A0A535FA79_9CHLR (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535FA79_9CHLR) HSP 1 Score: 100 bits (250), Expect = 4.810e-21 Identity = 61/170 (35.88%), Postives = 90/170 (52.94%), Query Frame = 1
Query: 1 QIKGIPYNESASPKQSQASIRVVLGIAAMKDWEILQLDVGMAYLEADVKYELYIELPEDY--RDFCDQMGRLQNAIYGLVHAGLLWSKRFSAKLAARGFEQYLVNPCV---TARKIRRIIVIYVDDLLVA--NEAKRGERQEMKDPCSPIKVLGEV*FYLGCHITRER*N 489
Q GI + ++ SP SIR++L IAA D+EI Q+DV A+L ++K E+Y+E P + D++ RL +IYGL A W+ RF + GF + PCV T+ I++YVDD+L+ N+ + +E +K LGE F LG I R+R N
Sbjct: 33 QRPGIDFEDTFSPVAMPKSIRILLAIAAYYDYEIWQMDVKTAFLNGNIKEEIYMEQPMGFISSGSADKVCRLNRSIYGLKQASRSWNIRFDEAVKGYGFVKNTYEPCVYTKTSTDAVEFIIVYVDDILLIGNNKEEMTSSKEWLSSQFSMKDLGEANFVLGIKIFRDRTN 202
BLAST of mRNA_H-elongata_contig47373.11852.1 vs. uniprot
Match: UPI001F50BB81 (hypothetical protein n=1 Tax=Ligilactobacillus salivarius TaxID=1624 RepID=UPI001F50BB81) HSP 1 Score: 98.2 bits (243), Expect = 1.850e-20 Identity = 62/169 (36.69%), Postives = 96/169 (56.80%), Query Frame = 1
Query: 1 QIKGIPYNESASPKQSQASIRVVLGIAAMKDWEILQLDVGMAYLEADVKYELYIELPEDYRD--FCDQMGRLQNAIYGLVHAGLLWSKRFSAKLAARGFEQYLVNPCVTARKIR----RIIVIYVDD-LLVANEAKRGER-QEMKDPCSPIKVLGEV*FYLGCHITRER 483
QI+G+ Y E+ SP S+R++L IAA D+EI Q+DV A+L ++K ELY+ PE + D +++ +LQ +IYGLV A W+ RF+ + A GF Q C+ +K+ +++YVDD LL+ N + E + + +K LGE + LG I R+R
Sbjct: 49 QIQGVDYEETFSPVAKLKSVRIMLAIAAFYDYEIWQMDVKTAFLNGNLKEELYMMQPEGFVDPKGANKVCKLQRSIYGLVQASRSWNIRFNEVIKAFGFIQVYGEACLY-KKVSGSSVAFLILYVDDILLMGNNIEMLESIKAYLNKSFSMKDLGEAAYILGIKIYRDR 216
BLAST of mRNA_H-elongata_contig47373.11852.1 vs. uniprot
Match: A0A8I7BEN6_HORVV (Uncharacterized protein n=26 Tax=cellular organisms TaxID=131567 RepID=A0A8I7BEN6_HORVV) HSP 1 Score: 99.4 bits (246), Expect = 6.520e-20 Identity = 63/169 (37.28%), Postives = 97/169 (57.40%), Query Frame = 1
Query: 1 QIKGIPYNESASPKQSQASIRVVLGIAAMKDWEILQLDVGMAYLEADVKYELYIELPEDYRD--FCDQMGRLQNAIYGLVHAGLLWSKRFSAKLAARGFEQYLVNPCVTARKIR----RIIVIYVDD-LLVANEAKRGER-QEMKDPCSPIKVLGEV*FYLGCHITRER 483
QI+G+ Y E+ SP S+R++L IAA D+EI Q+DV A+L ++K ELY+ PE + D +++ +LQ +IYGLV A W+ RF+ + A GF Q C+ +K+ +V+YVDD LL+ N+ + E + + +K LGE + LG I R+R
Sbjct: 879 QIQGVDYEETFSPVAKLKSVRIMLAIAAFYDYEIWQMDVKTAFLNGNLKEELYMMQPEGFVDPKGANKVCKLQRSIYGLVQASRSWNIRFNEVIKAFGFIQVYGEACMY-KKVSGSSVAFLVLYVDDILLMGNDIEMLESIKAYLNKSFSMKDLGEAAYILGIKIYRDR 1046
BLAST of mRNA_H-elongata_contig47373.11852.1 vs. uniprot
Match: A0A401GYE9_9APHY (Integrase catalytic domain-containing protein n=9 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GYE9_9APHY) HSP 1 Score: 97.8 bits (242), Expect = 2.200e-19 Identity = 59/168 (35.12%), Postives = 95/168 (56.55%), Query Frame = 1
Query: 1 QIKGIPYNESASPKQSQASIRVVLGIAAMKDWEILQLDVGMAYLEADVKYELYIELPEDYRDFCDQMGRLQNAIYGLVHAGLLWSKRFSAKLAARGFEQYLVNPCVTAR----KIRRIIVIYVDDLLV-ANEAKRGE--RQEMKDPCSPIKVLGEV*FYLGCHITRER 483
QI G+ Y E+ +P +IR +LG+AA+ DWEI Q+DV AYL +K E+Y+ PE Y D ++ +L+ +YGL +G W+ + KL GF++ +PC R KI I+ ++VDDLL+ N+ + ++E+++ + LGE +G I R+R
Sbjct: 885 QIPGMDYTETFAPVVRLETIRAILGLAAILDWEIGQMDVKGAYLNGTLKEEVYMRQPEGYSDGTYRVCKLKKTLYGLKQSGREWNIMLNRKLLDAGFKRLFSDPCAYIRIKGDKIE-IVTVWVDDLLIFTNDCALMDQLKRELRNMFE-VTDLGEPRKIVGIEIERDR 1050
BLAST of mRNA_H-elongata_contig47373.11852.1 vs. uniprot
Match: A0A1R3H5P4_COCAP (Integrase catalytic domain-containing protein n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3H5P4_COCAP) HSP 1 Score: 97.4 bits (241), Expect = 2.950e-19 Identity = 57/167 (34.13%), Postives = 95/167 (56.89%), Query Frame = 1
Query: 1 QIKGIPYNESASPKQSQASIRVVLGIAAMKDWEILQLDVGMAYLEADVKYELYIELPEDYRDFCD-QMGRLQNAIYGLVHAGLLWSKRFSAKLAARGFEQYLVNPCV---TARKIRRIIVIYVDDLLVANEAK---RGERQEMKDPCSPIKVLGEV*FYLGCHITRE 480
QI+G+ ++E+ +P ++R +L IAA+K+WE+ QLDV A+L D+ E+Y+ LP Y D D ++ R++ ++YGL A W +F A L GF Q V+ + T ++++YVDDL++A + R +Q + D IK LG + ++LG + R
Sbjct: 807 QIEGMDFHETFAPVAKLVTVRCLLAIAAIKNWELHQLDVNNAFLHGDLDEEVYMSLPPGYGDKNDSRVCRVRKSLYGLKQASRNWFAKFFAALLEFGFIQSTVDYSLFTLTTGSSFLVVLVYVDDLIIAGDDSVRIRSLKQHL-DSRFHIKDLGPLKYFLGIEVARS 972 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47373.11852.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig47373.11852.1 >prot_H-elongata_contig47373.11852.1 ID=prot_H-elongata_contig47373.11852.1|Name=mRNA_H-elongata_contig47373.11852.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=122bp MKDWEILQLDVGMAYLEADVKYELYIELPEDYRDFCDQMGRLQNAIYGLVback to top mRNA from alignment at H-elongata_contig47373:586..1374+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig47373.11852.1 ID=mRNA_H-elongata_contig47373.11852.1|Name=mRNA_H-elongata_contig47373.11852.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=789bp|location=Sequence derived from alignment at H-elongata_contig47373:586..1374+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig47373:586..1374+ >mRNA_H-elongata_contig47373.11852.1 ID=mRNA_H-elongata_contig47373.11852.1|Name=mRNA_H-elongata_contig47373.11852.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=732bp|location=Sequence derived from alignment at H-elongata_contig47373:586..1374+ (Himanthalia elongata Himel1 dioecious)back to top |