prot_H-elongata_contig139989.2786.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig139989.2786.1
Unique Nameprot_H-elongata_contig139989.2786.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length40
Homology
BLAST of mRNA_H-elongata_contig139989.2786.1 vs. uniprot
Match: A0A6H5L429_9PHAE (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L429_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 3.760e-17
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 0
Query:    1 MPIILLHDAEGGIVTVELKNGEVYRGLLDEAEDSMNLVLK 40
            MPIILLHDAEGGI+TVELKNGEV RG+LDEAEDSMNLVLK
Sbjct:    1 MPIILLHDAEGGIITVELKNGEVCRGVLDEAEDSMNLVLK 40          
BLAST of mRNA_H-elongata_contig139989.2786.1 vs. uniprot
Match: D7FT20_ECTSI (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT20_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 1.460e-16
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 0
Query:    1 MPIILLHDAEGGIVTVELKNGEVYRGLLDEAEDSMNLVLK 40
            MPIILLHDAEGGI+TVELKNGEV RG+LDEAEDSMNLVLK
Sbjct:    1 MPIILLHDAEGGIITVELKNGEVCRGVLDEAEDSMNLVLK 40          
BLAST of mRNA_H-elongata_contig139989.2786.1 vs. uniprot
Match: W7TBA5_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TBA5_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 6.230e-15
Identity = 31/40 (77.50%), Postives = 38/40 (95.00%), Query Frame = 0
Query:    1 MPIILLHDAEGGIVTVELKNGEVYRGLLDEAEDSMNLVLK 40
            +PIILLHDAEGGI+TVE + GE+YRGLLDEAED+MNL+L+
Sbjct:   11 IPIILLHDAEGGIITVETRTGELYRGLLDEAEDNMNLILR 50          
BLAST of mRNA_H-elongata_contig139989.2786.1 vs. uniprot
Match: I2CSB6_NANGC (Small nuclear ribonucleoprotein Sm D3 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CSB6_NANGC)

HSP 1 Score: 70.9 bits (172), Expect = 1.400e-14
Identity = 31/40 (77.50%), Postives = 38/40 (95.00%), Query Frame = 0
Query:    1 MPIILLHDAEGGIVTVELKNGEVYRGLLDEAEDSMNLVLK 40
            +PIILLHDAEGGI+TVE + GE+YRGLLDEAED+MNL+L+
Sbjct:   11 IPIILLHDAEGGIITVETRTGELYRGLLDEAEDNMNLILR 50          
BLAST of mRNA_H-elongata_contig139989.2786.1 vs. uniprot
Match: A0A4D9CW68_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CW68_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.760e-14
Identity = 31/40 (77.50%), Postives = 38/40 (95.00%), Query Frame = 0
Query:    1 MPIILLHDAEGGIVTVELKNGEVYRGLLDEAEDSMNLVLK 40
            +PIILLHDAEGGI+TVE + GE+YRGLLDEAED+MNL+L+
Sbjct:   11 IPIILLHDAEGGIITVETRTGELYRGLLDEAEDNMNLILR 50          
BLAST of mRNA_H-elongata_contig139989.2786.1 vs. uniprot
Match: A0A835YVP5_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVP5_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 5.000e-14
Identity = 29/40 (72.50%), Postives = 38/40 (95.00%), Query Frame = 0
Query:    1 MPIILLHDAEGGIVTVELKNGEVYRGLLDEAEDSMNLVLK 40
            MP+ILLHDAEG + TVE+K+GEVYRG+LDEAED+MN+++K
Sbjct:   11 MPVILLHDAEGAVCTVEVKSGEVYRGILDEAEDNMNILMK 50          
BLAST of mRNA_H-elongata_contig139989.2786.1 vs. uniprot
Match: A0A6U1QDM6_9STRA (Small nuclear ribonucleoprotein Sm D3 (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1QDM6_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 5.750e-14
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 0
Query:    1 MPIILLHDAEGGIVTVELKNGEVYRGLLDEAEDSMNLVL 39
            +PII+LHDAEG IVTVELKNGE YRGLLDEAED+MN +L
Sbjct:   11 IPIIMLHDAEGCIVTVELKNGETYRGLLDEAEDNMNCIL 49          
BLAST of mRNA_H-elongata_contig139989.2786.1 vs. uniprot
Match: A0A067C915_SAPPC (Small nuclear ribonucleoprotein Sm D3 n=5 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C915_SAPPC)

HSP 1 Score: 65.5 bits (158), Expect = 1.850e-12
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 0
Query:    1 MPIILLHDAEGGIVTVELKNGEVYRGLLDEAEDSMNLVLK 40
            +P ILLHD EG IVTVELKNG++YRG LDE ED+MN VLK
Sbjct:   11 IPTILLHDGEGTIVTVELKNGDLYRGFLDETEDNMNCVLK 50          
BLAST of mRNA_H-elongata_contig139989.2786.1 vs. uniprot
Match: F0YRV7_AURAN (Small nuclear ribonucleoprotein Sm D3 (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YRV7_AURAN)

HSP 1 Score: 63.2 bits (152), Expect = 4.930e-12
Identity = 27/40 (67.50%), Postives = 33/40 (82.50%), Query Frame = 0
Query:    1 MPIILLHDAEGGIVTVELKNGEVYRGLLDEAEDSMNLVLK 40
            +P+IL+HD EG IVT+E KNG+ YRG LDE ED+MN VLK
Sbjct:   11 VPLILMHDGEGTIVTIECKNGDTYRGFLDETEDNMNCVLK 50          
BLAST of mRNA_H-elongata_contig139989.2786.1 vs. uniprot
Match: F0YMQ0_AURAN (Small nuclear ribonucleoprotein Sm D3 (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YMQ0_AURAN)

HSP 1 Score: 63.2 bits (152), Expect = 1.040e-11
Identity = 27/40 (67.50%), Postives = 33/40 (82.50%), Query Frame = 0
Query:    1 MPIILLHDAEGGIVTVELKNGEVYRGLLDEAEDSMNLVLK 40
            +P+IL+HD EG IVT+E KNG+ YRG LDE ED+MN VLK
Sbjct:    5 VPLILMHDGEGTIVTIECKNGDTYRGFLDETEDNMNCVLK 44          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139989.2786.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L429_9PHAE3.760e-1792.50Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Ecto... [more]
D7FT20_ECTSI1.460e-1692.50Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Ecto... [more]
W7TBA5_9STRA6.230e-1577.50Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Nann... [more]
I2CSB6_NANGC1.400e-1477.50Small nuclear ribonucleoprotein Sm D3 (Fragment) n... [more]
A0A4D9CW68_9STRA1.760e-1477.50Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Nann... [more]
A0A835YVP5_9STRA5.000e-1472.50Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Trib... [more]
A0A6U1QDM6_9STRA5.750e-1482.05Small nuclear ribonucleoprotein Sm D3 (Fragment) n... [more]
A0A067C915_SAPPC1.850e-1275.00Small nuclear ribonucleoprotein Sm D3 n=5 Tax=Sapr... [more]
F0YRV7_AURAN4.930e-1267.50Small nuclear ribonucleoprotein Sm D3 (Fragment) n... [more]
F0YMQ0_AURAN1.040e-1167.50Small nuclear ribonucleoprotein Sm D3 (Fragment) n... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.30.30.100coord: 1..40
e-value: 4.9E-12
score: 47.1
NoneNo IPR availablePANTHERPTHR23338:SF17SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3coord: 2..39
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 5..40
e-value: 2.8E-8
score: 33.3
IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3PANTHERPTHR23338SMALL NUCLEAR RIBONUCLEOPROTEIN SMcoord: 2..39
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 2..40

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig139989contigH-elongata_contig139989:752..871 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig139989.2786.1mRNA_H-elongata_contig139989.2786.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig139989 752..901 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig139989.2786.1 ID=prot_H-elongata_contig139989.2786.1|Name=mRNA_H-elongata_contig139989.2786.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=40bp
MPIILLHDAEGGIVTVELKNGEVYRGLLDEAEDSMNLVLK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR027141LSm4/Sm_D1/D3
IPR010920LSM_dom_sf