mRNA_H-elongata_contig139989.2786.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig139989.2786.1
Unique NamemRNA_H-elongata_contig139989.2786.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig139989.2786.1 vs. uniprot
Match: A0A835YVP5_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVP5_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.180e-20
Identity = 38/50 (76.00%), Postives = 48/50 (96.00%), Query Frame = 1 
Query:    1 VSVTGNAGIGMPIILLHDAEGGIVTVELKNGEVYRGLLDEAEDSMNLVLK 150
            +SVTGNAGIGMP+ILLHDAEG + TVE+K+GEVYRG+LDEAED+MN+++K
Sbjct:    1 MSVTGNAGIGMPVILLHDAEGAVCTVEVKSGEVYRGILDEAEDNMNILMK 50
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BLAST of mRNA_H-elongata_contig139989.2786.1 vs. uniprot
Match: W7TBA5_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TBA5_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 6.490e-20
Identity = 37/50 (74.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    1 VSVTGNAGIGMPIILLHDAEGGIVTVELKNGEVYRGLLDEAEDSMNLVLK 150
            +SVTG  G+G+PIILLHDAEGGI+TVE + GE+YRGLLDEAED+MNL+L+
Sbjct:    1 MSVTGKGGVGIPIILLHDAEGGIITVETRTGELYRGLLDEAEDNMNLILR 50
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BLAST of mRNA_H-elongata_contig139989.2786.1 vs. uniprot
Match: I2CSB6_NANGC (Small nuclear ribonucleoprotein Sm D3 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CSB6_NANGC)

HSP 1 Score: 84.0 bits (206), Expect = 1.550e-19
Identity = 37/50 (74.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    1 VSVTGNAGIGMPIILLHDAEGGIVTVELKNGEVYRGLLDEAEDSMNLVLK 150
            +SVTG  G+G+PIILLHDAEGGI+TVE + GE+YRGLLDEAED+MNL+L+
Sbjct:    1 MSVTGKGGVGIPIILLHDAEGGIITVETRTGELYRGLLDEAEDNMNLILR 50
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BLAST of mRNA_H-elongata_contig139989.2786.1 vs. uniprot
Match: A0A4D9CW68_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CW68_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 2.000e-19
Identity = 37/50 (74.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    1 VSVTGNAGIGMPIILLHDAEGGIVTVELKNGEVYRGLLDEAEDSMNLVLK 150
            +SVTG  G+G+PIILLHDAEGGI+TVE + GE+YRGLLDEAED+MNL+L+
Sbjct:    1 MSVTGKGGVGIPIILLHDAEGGIITVETRTGELYRGLLDEAEDNMNLILR 50
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BLAST of mRNA_H-elongata_contig139989.2786.1 vs. uniprot
Match: A0A6U1QDM6_9STRA (Small nuclear ribonucleoprotein Sm D3 (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1QDM6_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 9.110e-19
Identity = 38/49 (77.55%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:    1 VSVTGNAGIGMPIILLHDAEGGIVTVELKNGEVYRGLLDEAEDSMNLVL 147
            +SVTG  G+G+PII+LHDAEG IVTVELKNGE YRGLLDEAED+MN +L
Sbjct:    1 MSVTGKRGVGIPIIMLHDAEGCIVTVELKNGETYRGLLDEAEDNMNCIL 49
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BLAST of mRNA_H-elongata_contig139989.2786.1 vs. uniprot
Match: A0A6H5L429_9PHAE (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L429_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 5.810e-17
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:   31 MPIILLHDAEGGIVTVELKNGEVYRGLLDEAEDSMNLVLK 150
            MPIILLHDAEGGI+TVELKNGEV RG+LDEAEDSMNLVLK
Sbjct:    1 MPIILLHDAEGGIITVELKNGEVCRGVLDEAEDSMNLVLK 40
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BLAST of mRNA_H-elongata_contig139989.2786.1 vs. uniprot
Match: F0YRV7_AURAN (Small nuclear ribonucleoprotein Sm D3 (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YRV7_AURAN)

HSP 1 Score: 75.9 bits (185), Expect = 7.220e-17
Identity = 33/50 (66.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:    1 VSVTGNAGIGMPIILLHDAEGGIVTVELKNGEVYRGLLDEAEDSMNLVLK 150
            +SVTG  G+G+P+IL+HD EG IVT+E KNG+ YRG LDE ED+MN VLK
Sbjct:    1 MSVTGKRGVGVPLILMHDGEGTIVTIECKNGDTYRGFLDETEDNMNCVLK 50
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BLAST of mRNA_H-elongata_contig139989.2786.1 vs. uniprot
Match: A0A067C915_SAPPC (Small nuclear ribonucleoprotein Sm D3 n=5 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C915_SAPPC)

HSP 1 Score: 77.0 bits (188), Expect = 8.450e-17
Identity = 35/50 (70.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:    1 VSVTGNAGIGMPIILLHDAEGGIVTVELKNGEVYRGLLDEAEDSMNLVLK 150
            ++VTG  G+G+P ILLHD EG IVTVELKNG++YRG LDE ED+MN VLK
Sbjct:    1 MAVTGKRGVGIPTILLHDGEGTIVTVELKNGDLYRGFLDETEDNMNCVLK 50
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BLAST of mRNA_H-elongata_contig139989.2786.1 vs. uniprot
Match: A0A7S3K1R1_9STRA (Small nuclear ribonucleoprotein Sm D3 (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K1R1_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.290e-16
Identity = 34/50 (68.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:    1 VSVTGNAGIGMPIILLHDAEGGIVTVELKNGEVYRGLLDEAEDSMNLVLK 150
            +SVTG  GIG+PIIL+HD EG IVTVE KNG++YRG LDE ED+MN ++K
Sbjct:   18 MSVTGKRGIGVPIILMHDGEGTIVTVECKNGDMYRGFLDETEDNMNCIMK 67
[Close]
BLAST of mRNA_H-elongata_contig139989.2786.1 vs. uniprot
Match: A0A8J2SGW2_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SGW2_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.870e-16
Identity = 33/50 (66.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:    1 VSVTGNAGIGMPIILLHDAEGGIVTVELKNGEVYRGLLDEAEDSMNLVLK 150
            +SVTG  G+G+P+IL+HD EG IVTVE KNG+ YRG LDE ED+MN +LK
Sbjct:    1 MSVTGKRGVGVPVILMHDGEGTIVTVECKNGDTYRGFLDETEDNMNCILK 50
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139989.2786.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YVP5_9STRA1.180e-2076.00Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Trib... [more]
W7TBA5_9STRA6.490e-2074.00Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Nann... [more]
I2CSB6_NANGC1.550e-1974.00Small nuclear ribonucleoprotein Sm D3 (Fragment) n... [more]
A0A4D9CW68_9STRA2.000e-1974.00Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Nann... [more]
A0A6U1QDM6_9STRA9.110e-1977.55Small nuclear ribonucleoprotein Sm D3 (Fragment) n... [more]
A0A6H5L429_9PHAE5.810e-1792.50Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Ecto... [more]
F0YRV7_AURAN7.220e-1766.00Small nuclear ribonucleoprotein Sm D3 (Fragment) n... [more]
A0A067C915_SAPPC8.450e-1770.00Small nuclear ribonucleoprotein Sm D3 n=5 Tax=Sapr... [more]
A0A7S3K1R1_9STRA1.290e-1668.00Small nuclear ribonucleoprotein Sm D3 (Fragment) n... [more]
A0A8J2SGW2_9STRA1.870e-1666.00Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Pela... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig139989contigH-elongata_contig139989:752..901 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.6
Seed ortholog evalue2.9e-12
Seed eggNOG ortholog2880.D7FT20
Preferred nameSMD3
KEGG koko:K07442,ko:K11088,ko:K18738
KEGG Pathwayko03040,ko04139,ko05322,map03040,map04139,map05322
KEGG ModuleM00351,M00352,M00354,M00355,M00398
GOsGO:0000243,GO:0000245,GO:0000375,GO:0000377,GO:0000387,GO:0000395,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005683,GO:0005684,GO:0005685,GO:0005686,GO:0005687,GO:0005689,GO:0005697,GO:0005737,GO:0005829,GO:0006139,GO:0006325,GO:0006342,GO:0006351,GO:0006353,GO:0006355,GO:0006366,GO:0006369,GO:0006376,GO:0006396,GO:0006397,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0006810,GO:0006913,GO:0006996,GO:0008150,GO:0008152,GO:0008213,GO:0008334,GO:0008380,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016604,GO:0017069,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019899,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0030620,GO:0030702,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032259,GO:0032774,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034708,GO:0034709,GO:0034715,GO:0034719,GO:0036211,GO:0040029,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045292,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0046540,GO:0046907,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051169,GO:0051170,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051276,GO:0051641,GO:0051649,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070034,GO:0071004,GO:0071007,GO:0071010,GO:0071011,GO:0071013,GO:0071014,GO:0071208,GO:0071209,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0097659,GO:0120114,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1990141,GO:1990234,GO:1990904,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.U7 snRNA binding
EggNOG OGsCOG1958@1,KOG3172@2759
EC2.1.1.219,2.1.1.220
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03016,ko03019,ko03032,ko03041
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size150
Cds size120
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929832.3736486-CDS-H-elongata_contig139989:751..8711622929832.3736486-CDS-H-elongata_contig139989:751..871Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139989 752..871 -
1691679175.828261-CDS-H-elongata_contig139989:751..8711691679175.828261-CDS-H-elongata_contig139989:751..871Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139989 752..871 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929832.3950627-UTR-H-elongata_contig139989:871..9011622929832.3950627-UTR-H-elongata_contig139989:871..901Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig139989 872..901 -
1691679175.8416433-UTR-H-elongata_contig139989:871..9011691679175.8416433-UTR-H-elongata_contig139989:871..901Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig139989 872..901 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig139989.2786.1prot_H-elongata_contig139989.2786.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig139989 752..871 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig139989.2786.1

>prot_H-elongata_contig139989.2786.1 ID=prot_H-elongata_contig139989.2786.1|Name=mRNA_H-elongata_contig139989.2786.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=40bp
MPIILLHDAEGGIVTVELKNGEVYRGLLDEAEDSMNLVLK
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mRNA from alignment at H-elongata_contig139989:752..901-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig139989.2786.1 ID=mRNA_H-elongata_contig139989.2786.1|Name=mRNA_H-elongata_contig139989.2786.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=150bp|location=Sequence derived from alignment at H-elongata_contig139989:752..901- (Himanthalia elongata Himel1 dioecious)
GTGTCCGTCACGGGAAACGCCGGGATCGGCATGCCCATTATTCTTCTGCA
CGACGCGGAAGGGGGCATCGTCACAGTCGAGCTCAAGAACGGCGAGGTAT
ATCGAGGACTGCTGGACGAGGCAGAGGACAGCATGAACCTTGTGCTCAAG
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Coding sequence (CDS) from alignment at H-elongata_contig139989:752..901-

>mRNA_H-elongata_contig139989.2786.1 ID=mRNA_H-elongata_contig139989.2786.1|Name=mRNA_H-elongata_contig139989.2786.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=240bp|location=Sequence derived from alignment at H-elongata_contig139989:752..901- (Himanthalia elongata Himel1 dioecious)
ATGCCCATTATTCTTCTGCACGACGCGGAAGGGGGCATCGTCACAGTCGA
GCTCAAGAACGGCGAGGTATATCGAGGACTGCTGGACGAGGCAGAGGACA
GCATGAACCTTGTGCTCAAGATGCCCATTATTCTTCTGCACGACGCGGAA
GGGGGCATCGTCACAGTCGAGCTCAAGAACGGCGAGGTATATCGAGGACT
GCTGGACGAGGCAGAGGACAGCATGAACCTTGTGCTCAAG
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