prot_H-elongata_contig137427.2637.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig137427.2637.1
Unique Nameprot_H-elongata_contig137427.2637.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length132
Homology
BLAST of mRNA_H-elongata_contig137427.2637.1 vs. uniprot
Match: A0A6H5L4T7_9PHAE (TFIIB-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L4T7_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 6.350e-39
Identity = 79/133 (59.40%), Postives = 96/133 (72.18%), Query Frame = 0
Query:    1 GDATSPLLSANSNMTTLIEGGNNKKQTGRLQKAQGMAVKESASEVALRACFI-RVREIAHILGLPSSIQEDACLLLRKVEDKGLFKVKKDPRGKAMCAAVTYITCRTWNVSRSMKDVSKAVDVTLRDVNKACK 132
            G A SPLLSA S M TLIEGG + K T +LQK QGMAVKESASE AL+  F  +VRE  + LGL  ++QE ACLLLRK ED GLFKVKK  RG A+C AVT +TCR W   ++MK++S   +V+L+ +NKA K
Sbjct:   67 GAAASPLLSAKSGMNTLIEGGQDSKLTAKLQKLQGMAVKESASERALKMDFFGKVREFGNRLGLTHAMQEHACLLLRKAEDSGLFKVKKAERGVAICVAVTLLTCRQWRRGQTMKEMSTMFNVSLKALNKAVK 199          
BLAST of mRNA_H-elongata_contig137427.2637.1 vs. uniprot
Match: A0A662SI12_9ARCH (Transcription initiation factor IIB n=1 Tax=Candidatus Korarchaeota archaeon TaxID=2056630 RepID=A0A662SI12_9ARCH)

HSP 1 Score: 64.7 bits (156), Expect = 7.740e-10
Identity = 38/116 (32.76%), Postives = 65/116 (56.03%), Query Frame = 0
Query:   15 TTLIEGGNNKKQTGRLQKAQGMAVKESASEVALRACFIRVREIAHILGLPSSIQEDACLLLRKVEDKGLFKVKKDPRGKAMCAAVTYITCRTWNVSRSMKDVSKAVDVTLRDVNKA 130
            T++I GG +KK T +L++AQ       + E ALR    ++R  A  L LP ++ +DA +L RK   KGL K +      +M AAV Y  CR  +  R++++V++   +  ++V ++
Sbjct:   37 TSIISGGESKKITEKLKRAQRRVTSGVSREKALRIALKKLRRAAVKLNLPPAVYQDAAILYRKASAKGLVKGRSMD---SMLAAVVYAACRRTHTPRNLREVAEHFKMKEKEVGRS 149          
BLAST of mRNA_H-elongata_contig137427.2637.1 vs. uniprot
Match: A0A7J2IYA4_9ARCH (Transcription initiation factor IIB n=2 Tax=Candidatus Pacearchaeota TaxID=1801617 RepID=A0A7J2IYA4_9ARCH)

HSP 1 Score: 51.2 bits (121), Expect = 6.770e-5
Identity = 28/86 (32.56%), Postives = 48/86 (55.81%), Query Frame = 0
Query:   47 LRACFIRVREIAHILGLPSSIQEDACLLLRKVEDKGLFKVKKDPRGKAM---CAAVTYITCRTWNVSRSMKDVSKAVDVTLRDVNK 129
            LR     +R +A +L LP+ ++E+A  L   V  +GL       RG++M    AA  Y  CR++N+ R++ ++S A DV  +D+ +
Sbjct:  113 LRLAMAELRRVASVLDLPNFVKEEASRLYNLVLQRGLV------RGRSMEANVAACIYAACRSYNLPRTLDEISAASDVDRKDIGR 192          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig137427.2637.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L4T7_9PHAE6.350e-3959.40TFIIB-type domain-containing protein n=2 Tax=Ectoc... [more]
A0A662SI12_9ARCH7.740e-1032.76Transcription initiation factor IIB n=1 Tax=Candid... [more]
A0A7J2IYA4_9ARCH6.770e-532.56Transcription initiation factor IIB n=2 Tax=Candid... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013150Transcription factor TFIIB, cyclin-like domainPFAMPF00382TFIIBcoord: 55..123
e-value: 2.6E-7
score: 30.6
NoneNo IPR availableGENE3D1.10.472.170coord: 1..132
e-value: 9.6E-24
score: 86.3
NoneNo IPR availablePANTHERPTHR11618:SF13TRANSCRIPTION INITIATION FACTOR IIBcoord: 1..130
IPR000812Transcription factor TFIIBPANTHERPTHR11618TRANSCRIPTION INITIATION FACTOR IIB-RELATEDcoord: 1..130
IPR036915Cyclin-like superfamilySUPERFAMILY47954Cyclin-likecoord: 51..132

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig137427contigH-elongata_contig137427:917..1634 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig137427.2637.1mRNA_H-elongata_contig137427.2637.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig137427 917..1634 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig137427.2637.1 ID=prot_H-elongata_contig137427.2637.1|Name=mRNA_H-elongata_contig137427.2637.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=132bp
GDATSPLLSANSNMTTLIEGGNNKKQTGRLQKAQGMAVKESASEVALRAC
FIRVREIAHILGLPSSIQEDACLLLRKVEDKGLFKVKKDPRGKAMCAAVT
YITCRTWNVSRSMKDVSKAVDVTLRDVNKACK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013150TFIIB_cyclin
IPR000812TFIIB
IPR036915Cyclin-like_sf