mRNA_H-elongata_contig137427.2637.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig137427.2637.1
Unique NamemRNA_H-elongata_contig137427.2637.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig137427.2637.1 vs. uniprot
Match: A0A6H5L4T7_9PHAE (TFIIB-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L4T7_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 6.350e-39
Identity = 79/133 (59.40%), Postives = 96/133 (72.18%), Query Frame = 1 
Query:    1 GDATSPLLSANSNMTTLIEGGNNKKQTGRLQKAQGMAVKESASEVALRACFI-RVREIAHILGLPSSIQEDACLLLRKVEDKGLFKVKKDPRGKAMCAAVTYITCRTWNVSRSMKDVSKAVDVTLRDVNKACK 396
            G A SPLLSA S M TLIEGG + K T +LQK QGMAVKESASE AL+  F  +VRE  + LGL  ++QE ACLLLRK ED GLFKVKK  RG A+C AVT +TCR W   ++MK++S   +V+L+ +NKA K
Sbjct:   67 GAAASPLLSAKSGMNTLIEGGQDSKLTAKLQKLQGMAVKESASERALKMDFFGKVREFGNRLGLTHAMQEHACLLLRKAEDSGLFKVKKAERGVAICVAVTLLTCRQWRRGQTMKEMSTMFNVSLKALNKAVK 199
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BLAST of mRNA_H-elongata_contig137427.2637.1 vs. uniprot
Match: A0A662SI12_9ARCH (Transcription initiation factor IIB n=1 Tax=Candidatus Korarchaeota archaeon TaxID=2056630 RepID=A0A662SI12_9ARCH)

HSP 1 Score: 64.7 bits (156), Expect = 7.740e-10
Identity = 38/116 (32.76%), Postives = 65/116 (56.03%), Query Frame = 1 
Query:   43 TTLIEGGNNKKQTGRLQKAQGMAVKESASEVALRACFIRVREIAHILGLPSSIQEDACLLLRKVEDKGLFKVKKDPRGKAMCAAVTYITCRTWNVSRSMKDVSKAVDVTLRDVNKA 390
            T++I GG +KK T +L++AQ       + E ALR    ++R  A  L LP ++ +DA +L RK   KGL K +      +M AAV Y  CR  +  R++++V++   +  ++V ++
Sbjct:   37 TSIISGGESKKITEKLKRAQRRVTSGVSREKALRIALKKLRRAAVKLNLPPAVYQDAAILYRKASAKGLVKGRSMD---SMLAAVVYAACRRTHTPRNLREVAEHFKMKEKEVGRS 149
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BLAST of mRNA_H-elongata_contig137427.2637.1 vs. uniprot
Match: A0A7J2IYA4_9ARCH (Transcription initiation factor IIB n=2 Tax=Candidatus Pacearchaeota TaxID=1801617 RepID=A0A7J2IYA4_9ARCH)

HSP 1 Score: 51.2 bits (121), Expect = 6.770e-5
Identity = 28/86 (32.56%), Postives = 48/86 (55.81%), Query Frame = 1 
Query:  139 LRACFIRVREIAHILGLPSSIQEDACLLLRKVEDKGLFKVKKDPRGKAM---CAAVTYITCRTWNVSRSMKDVSKAVDVTLRDVNK 387
            LR     +R +A +L LP+ ++E+A  L   V  +GL       RG++M    AA  Y  CR++N+ R++ ++S A DV  +D+ +
Sbjct:  113 LRLAMAELRRVASVLDLPNFVKEEASRLYNLVLQRGLV------RGRSMEANVAACIYAACRSYNLPRTLDEISAASDVDRKDIGR 192
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig137427.2637.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L4T7_9PHAE6.350e-3959.40TFIIB-type domain-containing protein n=2 Tax=Ectoc... [more]
A0A662SI12_9ARCH7.740e-1032.76Transcription initiation factor IIB n=1 Tax=Candid... [more]
A0A7J2IYA4_9ARCH6.770e-532.56Transcription initiation factor IIB n=2 Tax=Candid... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig137427contigH-elongata_contig137427:917..1634 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score148.3
Seed ortholog evalue2.5e-33
Seed eggNOG ortholog2880.D7FNK1
Preferred nameTFIIB
KEGG koko:K03124
KEGG Pathwayko03022,ko05169,ko05203,map03022,map05169,map05203
GOsGO:0000003,GO:0000769,GO:0000976,GO:0000977,GO:0000979,GO:0000988,GO:0000990,GO:0000991,GO:0000993,GO:0001012,GO:0001046,GO:0001047,GO:0001067,GO:0001098,GO:0001099,GO:0001139,GO:0001173,GO:0001174,GO:0001558,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006725,GO:0006807,GO:0006935,GO:0006949,GO:0007275,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009605,GO:0009653,GO:0009791,GO:0009856,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009960,GO:0009987,GO:0010035,GO:0010038,GO:0010154,GO:0010183,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010769,GO:0016043,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019899,GO:0022414,GO:0022603,GO:0022604,GO:0022607,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0032993,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0040008,GO:0040011,GO:0042221,GO:0042330,GO:0043167,GO:0043169,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043254,GO:0043565,GO:0043900,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0044706,GO:0044877,GO:0045595,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046686,GO:0046872,GO:0046914,GO:0048316,GO:0048518,GO:0048522,GO:0048608,GO:0048638,GO:0048646,GO:0048731,GO:0048856,GO:0048868,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0050918,GO:0051123,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051239,GO:0051252,GO:0051254,GO:0051510,GO:0051704,GO:0060255,GO:0060260,GO:0060261,GO:0060284,GO:0061458,GO:0065003,GO:0065004,GO:0065007,GO:0070063,GO:0070897,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0080092,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:1990114,GO:1990837,GO:2000112,GO:2000142,GO:2000144,GO:2000241,GO:2001141
EggNOG free text desc.DNA-templated transcriptional preinitiation complex assembly
EggNOG OGsCOG1405@1,KOG1597@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03021
Hectar predicted targeting categoryother localisation
Exons2
Model size396
Cds size396
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929816.9225194-CDS-H-elongata_contig137427:916..11201622929816.9225194-CDS-H-elongata_contig137427:916..1120Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137427 917..1120 +
1691679168.7649283-CDS-H-elongata_contig137427:916..11201691679168.7649283-CDS-H-elongata_contig137427:916..1120Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137427 917..1120 +
1622929816.941434-CDS-H-elongata_contig137427:1442..16341622929816.941434-CDS-H-elongata_contig137427:1442..1634Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137427 1443..1634 +
1691679168.7749043-CDS-H-elongata_contig137427:1442..16341691679168.7749043-CDS-H-elongata_contig137427:1442..1634Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137427 1443..1634 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig137427.2637.1prot_H-elongata_contig137427.2637.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig137427 917..1634 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig137427.2637.1

>prot_H-elongata_contig137427.2637.1 ID=prot_H-elongata_contig137427.2637.1|Name=mRNA_H-elongata_contig137427.2637.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=132bp
GDATSPLLSANSNMTTLIEGGNNKKQTGRLQKAQGMAVKESASEVALRAC
FIRVREIAHILGLPSSIQEDACLLLRKVEDKGLFKVKKDPRGKAMCAAVT
YITCRTWNVSRSMKDVSKAVDVTLRDVNKACK
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mRNA from alignment at H-elongata_contig137427:917..1634+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig137427.2637.1 ID=mRNA_H-elongata_contig137427.2637.1|Name=mRNA_H-elongata_contig137427.2637.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=718bp|location=Sequence derived from alignment at H-elongata_contig137427:917..1634+ (Himanthalia elongata Himel1 dioecious)
GGGGATGCGACCAGTCCCCTCCTGTCGGCGAATTCGAACATGACCACCTT
GATTGAGGGCGGGAATAACAAGAAGCAGACTGGTAGGCTTCAGAAGGCGC
AGGGCATGGCCGTAAAGGAATCGGCATCAGAGGTCGCCCTGAGGGCCTGC
TTCATCCGTGTTCGCGAGATCGCCCACATCTTGGGTCTCCCGTCATCCAT
CCAGGTGTGTGCTGCCATTTCGATAGCTCGATGCGATCCATCCCTTGGCT
AGTGAAAACTGCAGTACCCCCCTCCACCCCCCCCCCCGTAGGAAGTCCCT
TCTAGGAGGGCATCGGATGATTTGCGTCACCGTTGCACCGATTTAACACA
ACCCGTGTGCGGCCGTCAGCCTTATGAAAGAATGCAAAACACTCTCCCTG
TTGAAGGGTTCGAAGATCTCCATTCGCGCGACATGTGATGCACTCATTCC
CCGCACCGCTCCGTGCTCTGCTTGAAACGATATATAAATATTTTTTTCGA
ATGTGACGCGACGCCCACTTGTCCAGGAAGATGCTTGCCTCCTGCTGAGG
AAAGTGGAGGATAAGGGCCTGTTCAAAGTGAAGAAGGATCCTCGTGGGAA
GGCAATGTGCGCGGCTGTGACGTACATCACCTGTAGGACGTGGAACGTTT
CCCGTTCAATGAAGGACGTGTCTAAGGCAGTCGACGTGACGCTGCGAGAC
GTAAACAAGGCTTGTAAG
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Coding sequence (CDS) from alignment at H-elongata_contig137427:917..1634+

>mRNA_H-elongata_contig137427.2637.1 ID=mRNA_H-elongata_contig137427.2637.1|Name=mRNA_H-elongata_contig137427.2637.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=792bp|location=Sequence derived from alignment at H-elongata_contig137427:917..1634+ (Himanthalia elongata Himel1 dioecious)
GGGGATGCGACCAGTCCCCTCCTGTCGGCGAATTCGAACATGACCACCTT
GATTGAGGGCGGGAATAACAAGAAGCAGACTGGTAGGCTTCAGAAGGCGC
AGGGCATGGCCGTAAAGGAATCGGCATCAGAGGTCGCCCTGAGGGCCTGC
TTCATCCGTGTTCGCGAGATCGCCCACATCTTGGGTCTCCCGTCATCCAT
CCAGGGGGATGCGACCAGTCCCCTCCTGTCGGCGAATTCGAACATGACCA
CCTTGATTGAGGGCGGGAATAACAAGAAGCAGACTGGTAGGCTTCAGAAG
GCGCAGGGCATGGCCGTAAAGGAATCGGCATCAGAGGTCGCCCTGAGGGC
CTGCTTCATCCGTGTTCGCGAGATCGCCCACATCTTGGGTCTCCCGTCAT
CCATCCAGGAAGATGCTTGCCTCCTGCTGAGGAAAGTGGAGGATAAGGGC
CTGTTCAAAGTGAAGAAGGATCCTCGTGGGAAGGCAATGTGCGCGGCTGT
GACGTACATCACCTGTAGGACGTGGAACGTTTCCCGTTCAATGAAGGACG
TGTCTAAGGCAGTCGACGTGACGCTGCGAGACGTAAACAAGGCTTGTAAG
GAAGATGCTTGCCTCCTGCTGAGGAAAGTGGAGGATAAGGGCCTGTTCAA
AGTGAAGAAGGATCCTCGTGGGAAGGCAATGTGCGCGGCTGTGACGTACA
TCACCTGTAGGACGTGGAACGTTTCCCGTTCAATGAAGGACGTGTCTAAG
GCAGTCGACGTGACGCTGCGAGACGTAAACAAGGCTTGTAAG
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