Homology
BLAST of mRNA_H-elongata_contig103695.308.1 vs. uniprot
Match:
A0A6D2HB54_9BRAS (CCHC-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HB54_9BRAS)
HSP 1 Score: 58.9 bits (141), Expect = 4.780e-7
Identity = 30/82 (36.59%), Postives = 51/82 (62.20%), Query Frame = 0
Query: 19 IGAKSLSGAWAILNSMVDDEDSEIAKEQAKNKFEELRMESGQTIREYIAKVKSMANQIRYYGIEKSDHEISRRILNGFSPAY 100
+ A S AW +L +++ S++ + + +FEELRME G+T +YI +VK + Q+R I KSD+E+++++LN S Y
Sbjct: 85 LSASSAKEAWDLLRKG-NEQKSKLGR--LEKRFEELRMEEGETFNDYIDRVKEIVEQLRRLNISKSDYEVTKKVLNSLSAPY 163
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103695.308.1 vs. uniprot
Analysis Date: 2022-09-16 (
Diamond blastp: OGS1.0 vs UniRef90 )
Total hits: 1
M K C P D E S P G K D K T I A E V V I G A K S L S G A W A I L N S M V D D E D S E I A K E Q A K N K F E E L R M E S G Q T I R E Y I A K V K S M A N Q I R Y Y G I E K S D H E I S R R I L N G F S P A Y A S E K R N F A L R T D F S L S D L E G G L I R V E D P N K S L D G A D G S H A L A A G F K A R G G D Q G E R G S G G C E G R S G G R G R G A S G R G R 20 40 60 80 100 120 140 160 Expect = 4.78e-7 / Id = 36.59 Sequence A0A6D2HB54_9BRAS
Match Name E-value Identity Description
A0A6D2HB54_9BRAS 4.780e-7 36.59 CCHC-type domain-containing protein n=1 Tax=Microt... [more]
back to top
InterPro
Analysis Name:
InterProScan on OGS1.0
Date Performed: 2022-09-29
M K C P D E S P G K D K T I A E V V I G A K S L S G A W A I L N S M V D D E D S E I A K E Q A K N K F E E L R M E S G Q T I R E Y I A K V K S M A N Q I R Y Y G I E K S D H E I S R R I L N G F S P A Y A S E K R N F A L R T D F S L S D L E G G L I R V E D P N K S L D G A D G S H A L A A G F K A R G G D Q G E R G S G G C E G R S G G R G R G A S G R G R 20 40 60 80 100 120 140 160 Score = Expect = 5.4E-9 / Score = 35.8 Score = Sequence Coil PF14223 PTHR34222
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available COILS Coil Coil coord: 37..64 None No IPR available PFAM PF14223 Retrotran_gag_2 coord: 16..118 None No IPR available PANTHER PTHR34222 FAMILY NOT NAMED coord: 12..170
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence
>prot_H-elongata_contig103695.308.1 ID=prot_H-elongata_contig103695.308.1|Name=mRNA_H-elongata_contig103695.308.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=176bp back to top