prot_H-elongata_contig103695.308.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig103695.308.1
Unique Nameprot_H-elongata_contig103695.308.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length176
Homology
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BLAST of mRNA_H-elongata_contig103695.308.1 vs. uniprot
Match: A0A6D2HB54_9BRAS (CCHC-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HB54_9BRAS)

HSP 1 Score: 58.9 bits (141), Expect = 4.780e-7
Identity = 30/82 (36.59%), Postives = 51/82 (62.20%), Query Frame = 0 
Query:   19 IGAKSLSGAWAILNSMVDDEDSEIAKEQAKNKFEELRMESGQTIREYIAKVKSMANQIRYYGIEKSDHEISRRILNGFSPAY 100
            + A S   AW +L    +++ S++ +   + +FEELRME G+T  +YI +VK +  Q+R   I KSD+E+++++LN  S  Y
Sbjct:   85 LSASSAKEAWDLLRKG-NEQKSKLGR--LEKRFEELRMEEGETFNDYIDRVKEIVEQLRRLNISKSDYEVTKKVLNSLSAPY 163
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103695.308.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6D2HB54_9BRAS4.780e-736.59CCHC-type domain-containing protein n=1 Tax=Microt... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 37..64
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 16..118
e-value: 5.4E-9
score: 35.8
NoneNo IPR availablePANTHERPTHR34222FAMILY NOT NAMEDcoord: 12..170

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig103695contigH-elongata_contig103695:157..684 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig103695.308.1mRNA_H-elongata_contig103695.308.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig103695 157..684 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig103695.308.1 ID=prot_H-elongata_contig103695.308.1|Name=mRNA_H-elongata_contig103695.308.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=176bp
MKCPDESPGKDKTIAEVVIGAKSLSGAWAILNSMVDDEDSEIAKEQAKNK
FEELRMESGQTIREYIAKVKSMANQIRYYGIEKSDHEISRRILNGFSPAY
ASEKRNFALRTDFSLSDLEGGLIRVEDPNKSLDGADGSHALAAGFKARGG
DQGERGSGGCEGRSGGRGRGASGRGR
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