mRNA_H-elongata_contig7272.14945.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig7272.14945.1 vs. uniprot
Match: D8LG11_ECTSI (SKA2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG11_ECTSI) HSP 1 Score: 241 bits (615), Expect = 1.780e-74 Identity = 138/268 (51.49%), Postives = 171/268 (63.81%), Query Frame = 2
Query: 44 METVDLLKQLEINYKLINNDLEFSCHALDSLLKSAARADTSFPDLHALPCRIGALRTTIEALATGAAQVTREGKEAEPDLKSAMLENYTVMVGLYSRLGVAPDPDWVAVADEVKRLGPGEDARHHFLACFFGGTSSNHCLGCLELTDHCDAVCTIKAEN---ESGRAVEKSRKSPPTAISEQDFLAMPATTRGRSRLQDVRKVYAKVLEDFKEKESRNRPGCKPRAISKKELGAAGLKVFGLTGDSTLNTLRAMGLITVTKTGVTLNS 838
+E+ D+LKQLEIN+ L NDLEF+ H LDS +K A RA+ S PDLH L RI A++T + LA A +V E KE E L + ++ENY VMVGLY+RLGVAPDP+WVA A +V+ P F G +G D A + + N + R E+ + + I E+DFLA+ A TRGRS+LQDVRKVYAKV EDF+ K+SR RPGCKP I+K+EL AAGLKVFGLTGD LN LRAMGLITV K V + S
Sbjct: 4 LESTDILKQLEINFDLALNDLEFASHQLDSRMKDATRANVSIPDLHTLHHRIRAIKTELPGLAKDATEVEAERKETEIALNTTVIENYNVMVGLYARLGVAPDPEWVATAADVESFLPAPRDSGAVSDSFVSGGDEGEGVGSAVEEDATQASTVLHSGNPEMSASRVEERVVEQSFSVIFEEDFLAIHANTRGRSKLQDVRKVYAKVREDFEAKKSRGRPGCKPAPITKRELDAAGLKVFGLTGDCVLNALRAMGLITVHKGSVAMAS 271 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7272.14945.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig7272.14945.1 >prot_H-elongata_contig7272.14945.1 ID=prot_H-elongata_contig7272.14945.1|Name=mRNA_H-elongata_contig7272.14945.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=269bp METVDLLKQLEINYKLINNDLEFSCHALDSLLKSAARADTSFPDLHALPCback to top mRNA from alignment at H-elongata_contig7272:1426..5735- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig7272.14945.1 ID=mRNA_H-elongata_contig7272.14945.1|Name=mRNA_H-elongata_contig7272.14945.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4310bp|location=Sequence derived from alignment at H-elongata_contig7272:1426..5735- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig7272:1426..5735- >mRNA_H-elongata_contig7272.14945.1 ID=mRNA_H-elongata_contig7272.14945.1|Name=mRNA_H-elongata_contig7272.14945.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1614bp|location=Sequence derived from alignment at H-elongata_contig7272:1426..5735- (Himanthalia elongata Himel1 dioecious)back to top |