prot_H-elongata_contig7272.14945.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig7272.14945.1
Unique Nameprot_H-elongata_contig7272.14945.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length269
Homology
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BLAST of mRNA_H-elongata_contig7272.14945.1 vs. uniprot
Match: D8LG11_ECTSI (SKA2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG11_ECTSI)

HSP 1 Score: 241 bits (615), Expect = 4.450e-76
Identity = 138/268 (51.49%), Postives = 171/268 (63.81%), Query Frame = 0 
Query:    1 METVDLLKQLEINYKLINNDLEFSCHALDSLLKSAARADTSFPDLHALPCRIGALRTTIEALATGAAQVTREGKEAEPDLKSAMLENYTVMVGLYSRLGVAPDPDWVAVADEVKRLGPGEDARHHFLACFFGGTSSNHCLGCLELTDHCDAVCTIKAEN---ESGRAVEKSRKSPPTAISEQDFLAMPATTRGRSRLQDVRKVYAKVLEDFKEKESRNRPGCKPRAISKKELGAAGLKVFGLTGDSTLNTLRAMGLITVTKTGVTLNS 265
            +E+ D+LKQLEIN+ L  NDLEF+ H LDS +K A RA+ S PDLH L  RI A++T +  LA  A +V  E KE E  L + ++ENY VMVGLY+RLGVAPDP+WVA A +V+   P           F  G      +G     D   A   + + N    + R  E+  +   + I E+DFLA+ A TRGRS+LQDVRKVYAKV EDF+ K+SR RPGCKP  I+K+EL AAGLKVFGLTGD  LN LRAMGLITV K  V + S
Sbjct:    4 LESTDILKQLEINFDLALNDLEFASHQLDSRMKDATRANVSIPDLHTLHHRIRAIKTELPGLAKDATEVEAERKETEIALNTTVIENYNVMVGLYARLGVAPDPEWVATAADVESFLPAPRDSGAVSDSFVSGGDEGEGVGSAVEEDATQASTVLHSGNPEMSASRVEERVVEQSFSVIFEEDFLAIHANTRGRSKLQDVRKVYAKVREDFEAKKSRGRPGCKPAPITKRELDAAGLKVFGLTGDCVLNALRAMGLITVHKGSVAMAS 271
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7272.14945.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LG11_ECTSI4.450e-7651.49SKA2 domain-containing protein n=2 Tax=Ectocarpus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF11362DUF3161coord: 175..256
e-value: 1.2E-7
score: 31.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7272contigH-elongata_contig7272:1714..5692 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7272.14945.1mRNA_H-elongata_contig7272.14945.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig7272 1426..5735 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig7272.14945.1 ID=prot_H-elongata_contig7272.14945.1|Name=mRNA_H-elongata_contig7272.14945.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=269bp
METVDLLKQLEINYKLINNDLEFSCHALDSLLKSAARADTSFPDLHALPC
RIGALRTTIEALATGAAQVTREGKEAEPDLKSAMLENYTVMVGLYSRLGV
APDPDWVAVADEVKRLGPGEDARHHFLACFFGGTSSNHCLGCLELTDHCD
AVCTIKAENESGRAVEKSRKSPPTAISEQDFLAMPATTRGRSRLQDVRKV
YAKVLEDFKEKESRNRPGCKPRAISKKELGAAGLKVFGLTGDSTLNTLRA
MGLITVTKTGVTLNSTSS*
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