mRNA_H-elongata_contig7272.14945.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7272.14945.1
Unique NamemRNA_H-elongata_contig7272.14945.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig7272.14945.1 vs. uniprot
Match: D8LG11_ECTSI (SKA2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG11_ECTSI)

HSP 1 Score: 241 bits (615), Expect = 1.780e-74
Identity = 138/268 (51.49%), Postives = 171/268 (63.81%), Query Frame = 2
Query:   44 METVDLLKQLEINYKLINNDLEFSCHALDSLLKSAARADTSFPDLHALPCRIGALRTTIEALATGAAQVTREGKEAEPDLKSAMLENYTVMVGLYSRLGVAPDPDWVAVADEVKRLGPGEDARHHFLACFFGGTSSNHCLGCLELTDHCDAVCTIKAEN---ESGRAVEKSRKSPPTAISEQDFLAMPATTRGRSRLQDVRKVYAKVLEDFKEKESRNRPGCKPRAISKKELGAAGLKVFGLTGDSTLNTLRAMGLITVTKTGVTLNS 838
            +E+ D+LKQLEIN+ L  NDLEF+ H LDS +K A RA+ S PDLH L  RI A++T +  LA  A +V  E KE E  L + ++ENY VMVGLY+RLGVAPDP+WVA A +V+   P           F  G      +G     D   A   + + N    + R  E+  +   + I E+DFLA+ A TRGRS+LQDVRKVYAKV EDF+ K+SR RPGCKP  I+K+EL AAGLKVFGLTGD  LN LRAMGLITV K  V + S
Sbjct:    4 LESTDILKQLEINFDLALNDLEFASHQLDSRMKDATRANVSIPDLHTLHHRIRAIKTELPGLAKDATEVEAERKETEIALNTTVIENYNVMVGLYARLGVAPDPEWVATAADVESFLPAPRDSGAVSDSFVSGGDEGEGVGSAVEEDATQASTVLHSGNPEMSASRVEERVVEQSFSVIFEEDFLAIHANTRGRSKLQDVRKVYAKVREDFEAKKSRGRPGCKPAPITKRELDAAGLKVFGLTGDCVLNALRAMGLITVHKGSVAMAS 271          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7272.14945.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LG11_ECTSI1.780e-7451.49SKA2 domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7272contigH-elongata_contig7272:1426..5735 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-21_005010.1
Exons10
Model size1138
Cds size807
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7272.14945.1prot_H-elongata_contig7272.14945.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7272 1714..5692 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931129.1107185-UTR-H-elongata_contig7272:1425..17131622931129.1107185-UTR-H-elongata_contig7272:1425..1713Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7272 1426..1713 -
1691679709.9697974-UTR-H-elongata_contig7272:1425..17131691679709.9697974-UTR-H-elongata_contig7272:1425..1713Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7272 1426..1713 -
1622931129.2825778-UTR-H-elongata_contig7272:5692..57351622931129.2825778-UTR-H-elongata_contig7272:5692..5735Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7272 5693..5735 -
1691679710.0915658-UTR-H-elongata_contig7272:5692..57351691679710.0915658-UTR-H-elongata_contig7272:5692..5735Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7272 5693..5735 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931129.125837-CDS-H-elongata_contig7272:1713..17551622931129.125837-CDS-H-elongata_contig7272:1713..1755Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7272 1714..1755 -
1691679709.9785845-CDS-H-elongata_contig7272:1713..17551691679709.9785845-CDS-H-elongata_contig7272:1713..1755Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7272 1714..1755 -
1622931129.1403542-CDS-H-elongata_contig7272:1948..20081622931129.1403542-CDS-H-elongata_contig7272:1948..2008Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7272 1949..2008 -
1691679709.9873087-CDS-H-elongata_contig7272:1948..20081691679709.9873087-CDS-H-elongata_contig7272:1948..2008Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7272 1949..2008 -
1622931129.1549625-CDS-H-elongata_contig7272:2177..22351622931129.1549625-CDS-H-elongata_contig7272:2177..2235Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7272 2178..2235 -
1691679710.0015981-CDS-H-elongata_contig7272:2177..22351691679710.0015981-CDS-H-elongata_contig7272:2177..2235Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7272 2178..2235 -
1622931129.1684053-CDS-H-elongata_contig7272:2546..25961622931129.1684053-CDS-H-elongata_contig7272:2546..2596Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7272 2547..2596 -
1691679710.0126624-CDS-H-elongata_contig7272:2546..25961691679710.0126624-CDS-H-elongata_contig7272:2546..2596Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7272 2547..2596 -
1622931129.187339-CDS-H-elongata_contig7272:2765..28351622931129.187339-CDS-H-elongata_contig7272:2765..2835Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7272 2766..2835 -
1691679710.0227392-CDS-H-elongata_contig7272:2765..28351691679710.0227392-CDS-H-elongata_contig7272:2765..2835Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7272 2766..2835 -
1622931129.2028294-CDS-H-elongata_contig7272:3043..32091622931129.2028294-CDS-H-elongata_contig7272:3043..3209Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7272 3044..3209 -
1691679710.0329907-CDS-H-elongata_contig7272:3043..32091691679710.0329907-CDS-H-elongata_contig7272:3043..3209Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7272 3044..3209 -
1622931129.2180777-CDS-H-elongata_contig7272:3742..37961622931129.2180777-CDS-H-elongata_contig7272:3742..3796Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7272 3743..3796 -
1691679710.0432608-CDS-H-elongata_contig7272:3742..37961691679710.0432608-CDS-H-elongata_contig7272:3742..3796Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7272 3743..3796 -
1622931129.2298944-CDS-H-elongata_contig7272:3985..40701622931129.2298944-CDS-H-elongata_contig7272:3985..4070Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7272 3986..4070 -
1691679710.0567229-CDS-H-elongata_contig7272:3985..40701691679710.0567229-CDS-H-elongata_contig7272:3985..4070Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7272 3986..4070 -
1622931129.248782-CDS-H-elongata_contig7272:4398..45101622931129.248782-CDS-H-elongata_contig7272:4398..4510Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7272 4399..4510 -
1691679710.065443-CDS-H-elongata_contig7272:4398..45101691679710.065443-CDS-H-elongata_contig7272:4398..4510Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7272 4399..4510 -
1622931129.2613423-CDS-H-elongata_contig7272:5582..56921622931129.2613423-CDS-H-elongata_contig7272:5582..5692Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7272 5583..5692 -
1691679710.0745244-CDS-H-elongata_contig7272:5582..56921691679710.0745244-CDS-H-elongata_contig7272:5582..5692Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7272 5583..5692 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7272.14945.1

>prot_H-elongata_contig7272.14945.1 ID=prot_H-elongata_contig7272.14945.1|Name=mRNA_H-elongata_contig7272.14945.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=269bp
METVDLLKQLEINYKLINNDLEFSCHALDSLLKSAARADTSFPDLHALPC
RIGALRTTIEALATGAAQVTREGKEAEPDLKSAMLENYTVMVGLYSRLGV
APDPDWVAVADEVKRLGPGEDARHHFLACFFGGTSSNHCLGCLELTDHCD
AVCTIKAENESGRAVEKSRKSPPTAISEQDFLAMPATTRGRSRLQDVRKV
YAKVLEDFKEKESRNRPGCKPRAISKKELGAAGLKVFGLTGDSTLNTLRA
MGLITVTKTGVTLNSTSS*
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mRNA from alignment at H-elongata_contig7272:1426..5735-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7272.14945.1 ID=mRNA_H-elongata_contig7272.14945.1|Name=mRNA_H-elongata_contig7272.14945.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4310bp|location=Sequence derived from alignment at H-elongata_contig7272:1426..5735- (Himanthalia elongata Himel1 dioecious)
CGTGAACAAAAGTCGCCGCTTCGGTGTCGAACTGTGAAATATCATGGAGA CGGTGGATCTCCTGAAGCAATTGGAGATCAACTACAAGTTGATAAACAAT GATCTTGAGTTTTCTTGTCACGCGCTGGACTCCTTGCTGAAATCTGCGGC AAGGTGTGTATTTGTAGATGATGGTCGTTGCCCAACGGACAAGATAATGC TTCAGTTCCTGGTGCCTCGCTGCGTGAGACACCGTAGAGCGCCAGTCAGG CGCATTGTGATATCAGGGTAAAATGTCATCTTGTATTTTCTGTTCATCAG TACCAGCTGAGAAACTCCCGTTCTGATACATCGCGAGTTGAGGGCTTTTC GTAAAAAATAAAAAGTGCTCGGTGTACGGAAGAAATATGAAAACCTTTAT CTTGCTGGTACTGTACTGTACCAGGTATCTGCCGAATAATCTTCATAGAC GCCAACGGCCATATTTCTCTTCCGGAATCGCGGCGAGGCGCACAATAATT GGTCCATGGGGTCACATGAATATGCTTGCACCCGTTATTCAAGCTACCTT GAGGATTGCTGGCTCAGTGTCGGTGGACTCTTGGTGGAAAACACCATCAG CTCACAATTGTGTGCCCCAAACACGATGGCTGTTGACGGTAGAGATGGAC GCCGTCGCGGAAAGCGAGAAGATCGAGAGGATCACGGAAGTACGCAATGT ATTCAGACTGGGTTGGGAGAATGAGCGGGCTGACGCGGGACGGGGACGCC GAACTCGTCTCTCGAGGCGAAATTCTCAGGCGCGAACATGGAAAGGGAAA ACATGTTTTCCCTTTTATCAATCTGCATTAGACCGCGCAAACCGGCATGA CACACACGTAAGGGGGCGCCACGCCGATTTGCAAATACTCCCTCTTTATG CGTAGCTATCCCTGAAGACGTTGGATTGCCCTATCCTACTCGCGTTGCTT ATGCAACCGCGCTGGACTACCGCTACAACTCCCTGTTCAGCTGATCATGA GCAGGATTGACAACCATATCCATATATATATATATATGTGATGGCCACGT AGCTCGTACGAGTAGAGCTATAGCTGAAACGTTCACGAGAGCTCAGCACA AAATTACCTCGTTACGTGGCAATGAGCGAAGGGGGAAATATATTGCTCTC GGATTAAAACAAGCCCTCCTCTTGATGCTATGAGAACCAATATGTCCCAG TCTTCGTCACGTTGTGCTCTCGCAGAGCCGACACCTCATTTCCCGACCTC CATGCGCTACCGTGTCGCATCGGGGCACTCCGGACCACGATAGAAGCTCT CGCCACTGGTGCTGCTCAAGTAACTCGAGAGGGAAAGGTACCCTTGTAAC TCGAGAGAGAAATGTACTCTACGTTACGCGGCGTAGGGTAAAATGAAGAC ATGACCGGCCGGTGCAGCTATGGGCTCCCTCGAGCTCCTGCCAAACAAGT GATTCCAGTCATGTATAAGAATATCCGTCATGGTACTTATCGCTACGAGT GAGCAGGAAAATGACGCTTTGTACGCAGCAGCCCAAACAGGAGCGATGCG TGGTCAGTGCAGCGCGTGCATGTGGGACTCTGGACGGACGATCCCTTCTA GACTGTGGTTTCTACCTTTAATGCTGCTGGAAACCGTCTTGTCCTCTCCC CCTTTCCATACACAGGAGGCAGAACCAGACTTAAAGAGCGCCATGCTCGA AAACTACACGGTAATGGTCGGACTCTACTCGCGGCTTGGGGTTGCGCCAG GTGATTCCCCGGCGTAGTGGTTGACGGCACCTGCTGCTATTGTATTATAT TTATAGTACATTACGGAATATTGCCAATCATGGACATAGCAATGCTCCTC GTTGACGCCGCATCGTGTCGCTTTATTCCCTAGAGGGTTGCTCGATCTGA GCGACCAAATCTTGATGCGGTCGTTATGCCTGCTCGCAGATCCTGATTGG GTGGCAGTGGCGGATGAAGTAAAGCGTCTTGGACCTGGTGAGGGTCTTCG CAGCGGTCATTGTCTGGACTCGGCCTAGGCGCTTCGAAAAGCATGGCAGC GGTATTAATTCGAAGAGTTACGCAATCATAGGGAGATCTTCCTTGTGTAG CCAGTACAATGGTCGATCGGCCCATGACTACGCGCATCCTCAGACACAAG ACACACTTCCGTGGCTGCACCCTGCGGTGTCGATCTGAACCTCGCGCGAG CCTGCGCTGCTTTAGCGTAGTGCGACAGCTCTGTTTTGGCTCGTCAAATA ATTGTAACTGAGGATTCAAAGCACGCCCCACCCTGTCGTTCCGTTAGAGC AGCATCGGGAAGCAGCTTGGAGTCCGCCTCCGAAGAGGGAAGGAAAGGCT TGGCAGAAGAGACGTCACGTGCGGAAGGTCGGTTAGGCGCATGATGCGGC AACGACGAATCACGCACGGAGACTATCGCGACCTTCCTTTTGTGCAGCCG CGCCGTGTTTGATTTTTTTGCATAGGGATGTGCAGCAGAAAAGACTCGGG CGGTTTTTCCCCCGACCACTGCCGAGACGCGCGTCACCATTTTCTTGCGT GTTTTTTTGGTGGCACATCGTCCAATCATTGTTTGGGATGCCTTGAACTT ACAGATCACTGTGACGCAGTATGCACGATCAAGGCGGAAAATGAATCCGG TCGAGCCGTGGAAAAGAGTCGCAAATCACCACCAACCGCTATGTAAGTGC GTGTCAAAGAATCAAGCCACCTTGGTTCGCCGAAGGTTTTGGTAGCGATT TGTTTAAGCATGGCTCTAGAGCTCAAGCTCTTCTTTTTCTTGGTGGCCCA ATCGGAGAGTCCCTCTCCAACGCATGCATGCTTCGCTGTCGACAAGAGGC CCCATATTTCCATTTCCACTCTTTATGCTTCATGCGCGCGATGGCGTCAG CTCCGAACAGGACTTCTTAGCGATGCCTGCAACAACTCGCGGTCGTTCAA GGCTGCAAGACGTCCGCAAGGTAACGAGCATCCCATCCACAGATTCTCGA GCGCGCTTAGTTTATTTTTTTGCCTCCCTCTTTTCGTTTCCCTCGTCTTC GGTGCCCTGCCTCCCTCCCCCCCCCCCAAGTAATCACACTCCACGGTTCC TCGCACCGTCGTTGGCTTGTGTGGACTTAACTTTCCCAGGTGTACGCCAA GGTCCTGGAGGACTTCAAGGAAAAAGAGAGTCGTAATAGGTGCGCGATAC TGCAGCTGTAAAAGTGAGACCGAGCGGATTTCCTCGCGATAGTCGTGCTG CAGAGATGCGCCTTTTAAGCGAGTGATCGTTGTGCTCGCGTTTGTGTCGT CGTGATGAGGCACGCTCATCAACCCGACCTTTCGTGAGAGGGTAGTGGGT GTGGGGGGGTTGTCTTGCTAAGTGCACCGTCCCCTATTTTATTCTCGCAA ACAAGTTATTTATCGCCGCGTGCGTATATGTCCATCCGCTAAGATCAAGA GTGTGCCTTTAACGCCTTTTGTCTCTTTGTCTTCGCGATGGAAACGTCAG GCCTGGTTGTAAGCCCAGAGCCATCTCCAAGAAGGAGTTGGGCGCGGCGG GACTGAAGGTTAGTTCCTGCTAAGACGCATACCGGCAAGGATATGACGCT TTTGCAAAGGCCTCGGCGACGTATTGAACAAGGCATCCGCGTCACGTATC GTTACAGGATTATCGGCGCGGAACCAACCCTGATCATACATGGCTCTTGC GTCCGTCGCCCACCGTCTCTCTGCAAGGTGTTCGGTCTCACGGGTGACAG TACCCTCAACACTCTTCGCGCGATGGGGCTAATCACGGTAAGCCAAGACG GTTTTATGGCCGGCCTTGAACCGCGGTGCTCGCGATGCTAGTCTGGAACC GTCCGCGATCGTTGCGTTCCCTTCTCACCATCGTGTCATCTTCCTGTGGT ATCTATCGCAGCTGTCGTGTGTGCTGCTGCCTTGTTTTGACGTGCCGTCA ACAAGCTGCATGTTTTTATTACTGTTACAGGTGACGAAGACCGGCGTGAC GCTGAACTCTACATCTTCGTAAGCTTGCGTTAGAATCATGCCCTAGAAGC CGTGGCGCCGTTCACCGTGTGCCGTGAACGCAGCCGGAGTCCACGCTGGG GGATAGATAATGAGGTCCACCACCATATTTTTGTGGATTTGGGACACTAT TAATGCATACCAGGGTACTCTTAATAGATTAATAGTTGAAGTCAACCCGC CCTGGTTCATAGCATCAACCTATGTTGTTGTTTTTCTTTGTACGTTTGTT TGTGATATCTCCTTTTAGACCATTCGTCTTTTGGCGAGGGGAGCAGAGGG TTGGCCTCTT
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Coding sequence (CDS) from alignment at H-elongata_contig7272:1426..5735-

>mRNA_H-elongata_contig7272.14945.1 ID=mRNA_H-elongata_contig7272.14945.1|Name=mRNA_H-elongata_contig7272.14945.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1614bp|location=Sequence derived from alignment at H-elongata_contig7272:1426..5735- (Himanthalia elongata Himel1 dioecious)
ATGGAGACGGTGGATCTCCTGAAGCAATTGGAGATCAACTACAAGTTGAT
AAACAATGATCTTGAGTTTTCTTGTCACGCGCTGGACTCCTTGCTGAAAT
CTGCGGCAAGATGGAGACGGTGGATCTCCTGAAGCAATTGGAGATCAACT
ACAAGTTGATAAACAATGATCTTGAGTTTTCTTGTCACGCGCTGGACTCC
TTGCTGAAATCTGCGGCAAGAGCCGACACCTCATTTCCCGACCTCCATGC
GCTACCGTGTCGCATCGGGGCACTCCGGACCACGATAGAAGCTCTCGCCA
CTGGTGCTGCTCAAGTAACTCGAGAGGGAAAGAGCCGACACCTCATTTCC
CGACCTCCATGCGCTACCGTGTCGCATCGGGGCACTCCGGACCACGATAG
AAGCTCTCGCCACTGGTGCTGCTCAAGTAACTCGAGAGGGAAAGGAGGCA
GAACCAGACTTAAAGAGCGCCATGCTCGAAAACTACACGGTAATGGTCGG
ACTCTACTCGCGGCTTGGGGTTGCGCCAGGAGGCAGAACCAGACTTAAAG
AGCGCCATGCTCGAAAACTACACGGTAATGGTCGGACTCTACTCGCGGCT
TGGGGTTGCGCCAGATCCTGATTGGGTGGCAGTGGCGGATGAAGTAAAGC
GTCTTGGACCTGGTGAGGATCCTGATTGGGTGGCAGTGGCGGATGAAGTA
AAGCGTCTTGGACCTGGTGAGGACGCGCGTCACCATTTTCTTGCGTGTTT
TTTTGGTGGCACATCGTCCAATCATTGTTTGGGATGCCTTGAACTTACAG
ATCACTGTGACGCAGTATGCACGATCAAGGCGGAAAATGAATCCGGTCGA
GCCGTGGAAAAGAGTCGCAAATCACCACCAACCGCTATACGCGCGTCACC
ATTTTCTTGCGTGTTTTTTTGGTGGCACATCGTCCAATCATTGTTTGGGA
TGCCTTGAACTTACAGATCACTGTGACGCAGTATGCACGATCAAGGCGGA
AAATGAATCCGGTCGAGCCGTGGAAAAGAGTCGCAAATCACCACCAACCG
CTATCTCCGAACAGGACTTCTTAGCGATGCCTGCAACAACTCGCGGTCGT
TCAAGGCTGCAAGACGTCCGCAAGCTCCGAACAGGACTTCTTAGCGATGC
CTGCAACAACTCGCGGTCGTTCAAGGCTGCAAGACGTCCGCAAGGTGTAC
GCCAAGGTCCTGGAGGACTTCAAGGAAAAAGAGAGTCGTAATAGGTGTAC
GCCAAGGTCCTGGAGGACTTCAAGGAAAAAGAGAGTCGTAATAGGCCTGG
TTGTAAGCCCAGAGCCATCTCCAAGAAGGAGTTGGGCGCGGCGGGACTGA
AGGCCTGGTTGTAAGCCCAGAGCCATCTCCAAGAAGGAGTTGGGCGCGGC
GGGACTGAAGGTGTTCGGTCTCACGGGTGACAGTACCCTCAACACTCTTC
GCGCGATGGGGCTAATCACGGTGTTCGGTCTCACGGGTGACAGTACCCTC
AACACTCTTCGCGCGATGGGGCTAATCACGGTGACGAAGACCGGCGTGAC
GCTGAACTCTACATCTTCGTAAGTGACGAAGACCGGCGTGACGCTGAACT
CTACATCTTCGTAA
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