mRNA_H-elongata_contig57833.13254.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig57833.13254.1 vs. uniprot
Match: A0A6H5KPT0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPT0_9PHAE) HSP 1 Score: 110 bits (276), Expect = 6.550e-27 Identity = 64/159 (40.25%), Postives = 90/159 (56.60%), Query Frame = 1
Query: 4 VVVVHVDDILAHAKDKVTMDRFAAELGQKFEMKYMGDARYYMGCHITGNRKARELKIDQHLYVESMVETFDVKKGSNIPATSGVPTLSKADEPRNPEEKEEMRTFPYREAVGMLMWTATMTRSDIAGAVRAVARLCENSGPAHKKAGMKTMQYLLHTKD 480
++V++VDDIL D+ + F A L +KF K +G+ +++ GC I + +A L+I Q Y++SMVE FDVK S IPAT G K E EE +P REA+G +MW +T +R D++ AVRAVAR H A K + YL T+D
Sbjct: 9 IIVIYVDDILVAGSDE-DFEEFLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRD 159
BLAST of mRNA_H-elongata_contig57833.13254.1 vs. uniprot
Match: A0A6H5KTL3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL3_9PHAE) HSP 1 Score: 108 bits (269), Expect = 1.510e-24 Identity = 63/159 (39.62%), Postives = 89/159 (55.97%), Query Frame = 1
Query: 4 VVVVHVDDILAHAKDKVTMDRFAAELGQKFEMKYMGDARYYMGCHITGNRKARELKIDQHLYVESMVETFDVKKGSNIPATSGVPTLSKADEPRNPEEKEEMRTFPYREAVGMLMWTATMTRSDIAGAVRAVARLCENSGPAHKKAGMKTMQYLLHTKD 480
++V++VDDIL D+ + A L +KF K +G+ +++ GC I + +A L+I Q Y++SMVE FDVK S IPAT G K E EE +P REA+G +MW +T +R D++ AVRAVAR H A K + YL T+D
Sbjct: 216 IIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRD 366
BLAST of mRNA_H-elongata_contig57833.13254.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE) HSP 1 Score: 108 bits (269), Expect = 2.860e-24 Identity = 63/159 (39.62%), Postives = 89/159 (55.97%), Query Frame = 1
Query: 4 VVVVHVDDILAHAKDKVTMDRFAAELGQKFEMKYMGDARYYMGCHITGNRKARELKIDQHLYVESMVETFDVKKGSNIPATSGVPTLSKADEPRNPEEKEEMRTFPYREAVGMLMWTATMTRSDIAGAVRAVARLCENSGPAHKKAGMKTMQYLLHTKD 480
++V++VDDIL D+ + A L +KF K +G+ +++ GC I + +A L+I Q Y++SMVE FDVK S IPAT G K E EE +P REA+G +MW +T +R D++ AVRAVAR H A K + YL T+D
Sbjct: 929 IIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRD 1079
BLAST of mRNA_H-elongata_contig57833.13254.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 108 bits (269), Expect = 2.920e-24 Identity = 63/159 (39.62%), Postives = 89/159 (55.97%), Query Frame = 1
Query: 4 VVVVHVDDILAHAKDKVTMDRFAAELGQKFEMKYMGDARYYMGCHITGNRKARELKIDQHLYVESMVETFDVKKGSNIPATSGVPTLSKADEPRNPEEKEEMRTFPYREAVGMLMWTATMTRSDIAGAVRAVARLCENSGPAHKKAGMKTMQYLLHTKD 480
++V++VDDIL D+ + A L +KF K +G+ +++ GC I + +A L+I Q Y++SMVE FDVK S IPAT G K E EE +P REA+G +MW +T +R D++ AVRAVAR H A K + YL T+D
Sbjct: 1308 IIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRD 1458
BLAST of mRNA_H-elongata_contig57833.13254.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 108 bits (269), Expect = 2.930e-24 Identity = 63/159 (39.62%), Postives = 89/159 (55.97%), Query Frame = 1
Query: 4 VVVVHVDDILAHAKDKVTMDRFAAELGQKFEMKYMGDARYYMGCHITGNRKARELKIDQHLYVESMVETFDVKKGSNIPATSGVPTLSKADEPRNPEEKEEMRTFPYREAVGMLMWTATMTRSDIAGAVRAVARLCENSGPAHKKAGMKTMQYLLHTKD 480
++V++VDDIL D+ + A L +KF K +G+ +++ GC I + +A L+I Q Y++SMVE FDVK S IPAT G K E EE +P REA+G +MW +T +R D++ AVRAVAR H A K + YL T+D
Sbjct: 1328 IIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRD 1478
BLAST of mRNA_H-elongata_contig57833.13254.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 108 bits (269), Expect = 2.940e-24 Identity = 63/159 (39.62%), Postives = 89/159 (55.97%), Query Frame = 1
Query: 4 VVVVHVDDILAHAKDKVTMDRFAAELGQKFEMKYMGDARYYMGCHITGNRKARELKIDQHLYVESMVETFDVKKGSNIPATSGVPTLSKADEPRNPEEKEEMRTFPYREAVGMLMWTATMTRSDIAGAVRAVARLCENSGPAHKKAGMKTMQYLLHTKD 480
++V++VDDIL D+ + A L +KF K +G+ +++ GC I + +A L+I Q Y++SMVE FDVK S IPAT G K E EE +P REA+G +MW +T +R D++ AVRAVAR H A K + YL T+D
Sbjct: 1471 IIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRD 1621
BLAST of mRNA_H-elongata_contig57833.13254.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE) HSP 1 Score: 105 bits (263), Expect = 1.750e-23 Identity = 62/159 (38.99%), Postives = 89/159 (55.97%), Query Frame = 1
Query: 4 VVVVHVDDILAHAKDKVTMDRFAAELGQKFEMKYMGDARYYMGCHITGNRKARELKIDQHLYVESMVETFDVKKGSNIPATSGVPTLSKADEPRNPEEKEEMRTFPYREAVGMLMWTATMTRSDIAGAVRAVARLCENSGPAHKKAGMKTMQYLLHTKD 480
++V++VDDIL D+ + A L +KF K +G+ +++ GC I + A L+I Q Y++SMVE FDVK S IPAT G K ++ + E +P REAVG +MW +T +R D++ AVRAVAR H A K + YL T+D
Sbjct: 520 IIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDDKGGE-------WPVREAVGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRD 670
BLAST of mRNA_H-elongata_contig57833.13254.1 vs. uniprot
Match: A0A6H5K164_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K164_9PHAE) HSP 1 Score: 105 bits (261), Expect = 3.180e-23 Identity = 61/159 (38.36%), Postives = 88/159 (55.35%), Query Frame = 1
Query: 4 VVVVHVDDILAHAKDKVTMDRFAAELGQKFEMKYMGDARYYMGCHITGNRKARELKIDQHLYVESMVETFDVKKGSNIPATSGVPTLSKADEPRNPEEKEEMRTFPYREAVGMLMWTATMTRSDIAGAVRAVARLCENSGPAHKKAGMKTMQYLLHTKD 480
++V++VDDIL D+ + A L +KF K +G+ +++ GC I + A L+I Q Y++SMVE FDVK S IPAT G K E EE +P REA+G +MW +T +R D++ AVRAVAR H A K + ++ T+D
Sbjct: 564 IIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGFMKGTRD 714
BLAST of mRNA_H-elongata_contig57833.13254.1 vs. uniprot
Match: A0A6H5JQW4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQW4_9PHAE) HSP 1 Score: 105 bits (261), Expect = 3.400e-23 Identity = 61/159 (38.36%), Postives = 88/159 (55.35%), Query Frame = 1
Query: 4 VVVVHVDDILAHAKDKVTMDRFAAELGQKFEMKYMGDARYYMGCHITGNRKARELKIDQHLYVESMVETFDVKKGSNIPATSGVPTLSKADEPRNPEEKEEMRTFPYREAVGMLMWTATMTRSDIAGAVRAVARLCENSGPAHKKAGMKTMQYLLHTKD 480
++V++VDDIL D+ + A L +KF K +G+ +++ GC I + +A L+I Q Y++SMVE FDVK S IPAT G K E EE +P R+A+G +MW +T +R D++ A RAVAR H A K + YL T+D
Sbjct: 1038 IIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVRKAIGSMMWVSTFSRPDVSFAARAVARHAHAPAKRHWDAIQKILGYLKGTRD 1188
BLAST of mRNA_H-elongata_contig57833.13254.1 vs. uniprot
Match: A0A6H5JRS6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRS6_9PHAE) HSP 1 Score: 99.4 bits (246), Expect = 6.860e-23 Identity = 56/134 (41.79%), Postives = 80/134 (59.70%), Query Frame = 1
Query: 4 VVVVHVDDILAHAKDKVTMDRFAAELGQKFEMKYMGDARYYMGCHITGNRKARELKIDQHLYVESMVETFDVKKGSNIPATSGVPTLSKADEPRNPEEKEEMRTFPYREAVGMLMWTATMTRSDIAGAVRAVAR 405
++V++VDDIL D+ + A L +KF K +G+ +++ GC I + +A L+I Q Y++SMVE FDVK S IPAT G K E EE +P REA+G +MW +T +R D++ AVRAVAR
Sbjct: 73 IIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVAR 198 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57833.13254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig57833.13254.1 >prot_H-elongata_contig57833.13254.1 ID=prot_H-elongata_contig57833.13254.1|Name=mRNA_H-elongata_contig57833.13254.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=161bp VVVVVHVDDILAHAKDKVTMDRFAAELGQKFEMKYMGDARYYMGCHITGNback to top mRNA from alignment at H-elongata_contig57833:49..531- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig57833.13254.1 ID=mRNA_H-elongata_contig57833.13254.1|Name=mRNA_H-elongata_contig57833.13254.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=483bp|location=Sequence derived from alignment at H-elongata_contig57833:49..531- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig57833:49..531- >mRNA_H-elongata_contig57833.13254.1 ID=mRNA_H-elongata_contig57833.13254.1|Name=mRNA_H-elongata_contig57833.13254.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=966bp|location=Sequence derived from alignment at H-elongata_contig57833:49..531- (Himanthalia elongata Himel1 dioecious)back to top |