mRNA_H-elongata_contig57833.13254.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig57833.13254.1
Unique NamemRNA_H-elongata_contig57833.13254.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig57833.13254.1 vs. uniprot
Match: A0A6H5KPT0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPT0_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 6.550e-27
Identity = 64/159 (40.25%), Postives = 90/159 (56.60%), Query Frame = 1 
Query:    4 VVVVHVDDILAHAKDKVTMDRFAAELGQKFEMKYMGDARYYMGCHITGNRKARELKIDQHLYVESMVETFDVKKGSNIPATSGVPTLSKADEPRNPEEKEEMRTFPYREAVGMLMWTATMTRSDIAGAVRAVARLCENSGPAHKKAGMKTMQYLLHTKD 480
            ++V++VDDIL    D+   + F A L +KF  K +G+ +++ GC I  + +A  L+I Q  Y++SMVE FDVK  S IPAT G     K        E EE   +P REA+G +MW +T +R D++ AVRAVAR        H  A  K + YL  T+D
Sbjct:    9 IIVIYVDDILVAGSDE-DFEEFLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRD 159
[Close]
BLAST of mRNA_H-elongata_contig57833.13254.1 vs. uniprot
Match: A0A6H5KTL3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL3_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 1.510e-24
Identity = 63/159 (39.62%), Postives = 89/159 (55.97%), Query Frame = 1 
Query:    4 VVVVHVDDILAHAKDKVTMDRFAAELGQKFEMKYMGDARYYMGCHITGNRKARELKIDQHLYVESMVETFDVKKGSNIPATSGVPTLSKADEPRNPEEKEEMRTFPYREAVGMLMWTATMTRSDIAGAVRAVARLCENSGPAHKKAGMKTMQYLLHTKD 480
            ++V++VDDIL    D+   +   A L +KF  K +G+ +++ GC I  + +A  L+I Q  Y++SMVE FDVK  S IPAT G     K        E EE   +P REA+G +MW +T +R D++ AVRAVAR        H  A  K + YL  T+D
Sbjct:  216 IIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRD 366
[Close]
BLAST of mRNA_H-elongata_contig57833.13254.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 2.860e-24
Identity = 63/159 (39.62%), Postives = 89/159 (55.97%), Query Frame = 1 
Query:    4 VVVVHVDDILAHAKDKVTMDRFAAELGQKFEMKYMGDARYYMGCHITGNRKARELKIDQHLYVESMVETFDVKKGSNIPATSGVPTLSKADEPRNPEEKEEMRTFPYREAVGMLMWTATMTRSDIAGAVRAVARLCENSGPAHKKAGMKTMQYLLHTKD 480
            ++V++VDDIL    D+   +   A L +KF  K +G+ +++ GC I  + +A  L+I Q  Y++SMVE FDVK  S IPAT G     K        E EE   +P REA+G +MW +T +R D++ AVRAVAR        H  A  K + YL  T+D
Sbjct:  929 IIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRD 1079
[Close]
BLAST of mRNA_H-elongata_contig57833.13254.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 2.920e-24
Identity = 63/159 (39.62%), Postives = 89/159 (55.97%), Query Frame = 1 
Query:    4 VVVVHVDDILAHAKDKVTMDRFAAELGQKFEMKYMGDARYYMGCHITGNRKARELKIDQHLYVESMVETFDVKKGSNIPATSGVPTLSKADEPRNPEEKEEMRTFPYREAVGMLMWTATMTRSDIAGAVRAVARLCENSGPAHKKAGMKTMQYLLHTKD 480
            ++V++VDDIL    D+   +   A L +KF  K +G+ +++ GC I  + +A  L+I Q  Y++SMVE FDVK  S IPAT G     K        E EE   +P REA+G +MW +T +R D++ AVRAVAR        H  A  K + YL  T+D
Sbjct: 1308 IIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRD 1458
[Close]
BLAST of mRNA_H-elongata_contig57833.13254.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 2.930e-24
Identity = 63/159 (39.62%), Postives = 89/159 (55.97%), Query Frame = 1 
Query:    4 VVVVHVDDILAHAKDKVTMDRFAAELGQKFEMKYMGDARYYMGCHITGNRKARELKIDQHLYVESMVETFDVKKGSNIPATSGVPTLSKADEPRNPEEKEEMRTFPYREAVGMLMWTATMTRSDIAGAVRAVARLCENSGPAHKKAGMKTMQYLLHTKD 480
            ++V++VDDIL    D+   +   A L +KF  K +G+ +++ GC I  + +A  L+I Q  Y++SMVE FDVK  S IPAT G     K        E EE   +P REA+G +MW +T +R D++ AVRAVAR        H  A  K + YL  T+D
Sbjct: 1328 IIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRD 1478
[Close]
BLAST of mRNA_H-elongata_contig57833.13254.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 2.940e-24
Identity = 63/159 (39.62%), Postives = 89/159 (55.97%), Query Frame = 1 
Query:    4 VVVVHVDDILAHAKDKVTMDRFAAELGQKFEMKYMGDARYYMGCHITGNRKARELKIDQHLYVESMVETFDVKKGSNIPATSGVPTLSKADEPRNPEEKEEMRTFPYREAVGMLMWTATMTRSDIAGAVRAVARLCENSGPAHKKAGMKTMQYLLHTKD 480
            ++V++VDDIL    D+   +   A L +KF  K +G+ +++ GC I  + +A  L+I Q  Y++SMVE FDVK  S IPAT G     K        E EE   +P REA+G +MW +T +R D++ AVRAVAR        H  A  K + YL  T+D
Sbjct: 1471 IIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRD 1621
[Close]
BLAST of mRNA_H-elongata_contig57833.13254.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 1.750e-23
Identity = 62/159 (38.99%), Postives = 89/159 (55.97%), Query Frame = 1 
Query:    4 VVVVHVDDILAHAKDKVTMDRFAAELGQKFEMKYMGDARYYMGCHITGNRKARELKIDQHLYVESMVETFDVKKGSNIPATSGVPTLSKADEPRNPEEKEEMRTFPYREAVGMLMWTATMTRSDIAGAVRAVARLCENSGPAHKKAGMKTMQYLLHTKD 480
            ++V++VDDIL    D+   +   A L +KF  K +G+ +++ GC I  +  A  L+I Q  Y++SMVE FDVK  S IPAT G     K ++ +  E       +P REAVG +MW +T +R D++ AVRAVAR        H  A  K + YL  T+D
Sbjct:  520 IIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDDKGGE-------WPVREAVGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRD 670
[Close]
BLAST of mRNA_H-elongata_contig57833.13254.1 vs. uniprot
Match: A0A6H5K164_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K164_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 3.180e-23
Identity = 61/159 (38.36%), Postives = 88/159 (55.35%), Query Frame = 1 
Query:    4 VVVVHVDDILAHAKDKVTMDRFAAELGQKFEMKYMGDARYYMGCHITGNRKARELKIDQHLYVESMVETFDVKKGSNIPATSGVPTLSKADEPRNPEEKEEMRTFPYREAVGMLMWTATMTRSDIAGAVRAVARLCENSGPAHKKAGMKTMQYLLHTKD 480
            ++V++VDDIL    D+   +   A L +KF  K +G+ +++ GC I  +  A  L+I Q  Y++SMVE FDVK  S IPAT G     K        E EE   +P REA+G +MW +T +R D++ AVRAVAR        H  A  K + ++  T+D
Sbjct:  564 IIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGFMKGTRD 714
[Close]
BLAST of mRNA_H-elongata_contig57833.13254.1 vs. uniprot
Match: A0A6H5JQW4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQW4_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 3.400e-23
Identity = 61/159 (38.36%), Postives = 88/159 (55.35%), Query Frame = 1 
Query:    4 VVVVHVDDILAHAKDKVTMDRFAAELGQKFEMKYMGDARYYMGCHITGNRKARELKIDQHLYVESMVETFDVKKGSNIPATSGVPTLSKADEPRNPEEKEEMRTFPYREAVGMLMWTATMTRSDIAGAVRAVARLCENSGPAHKKAGMKTMQYLLHTKD 480
            ++V++VDDIL    D+   +   A L +KF  K +G+ +++ GC I  + +A  L+I Q  Y++SMVE FDVK  S IPAT G     K        E EE   +P R+A+G +MW +T +R D++ A RAVAR        H  A  K + YL  T+D
Sbjct: 1038 IIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVRKAIGSMMWVSTFSRPDVSFAARAVARHAHAPAKRHWDAIQKILGYLKGTRD 1188
[Close]
BLAST of mRNA_H-elongata_contig57833.13254.1 vs. uniprot
Match: A0A6H5JRS6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRS6_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 6.860e-23
Identity = 56/134 (41.79%), Postives = 80/134 (59.70%), Query Frame = 1 
Query:    4 VVVVHVDDILAHAKDKVTMDRFAAELGQKFEMKYMGDARYYMGCHITGNRKARELKIDQHLYVESMVETFDVKKGSNIPATSGVPTLSKADEPRNPEEKEEMRTFPYREAVGMLMWTATMTRSDIAGAVRAVAR 405
            ++V++VDDIL    D+   +   A L +KF  K +G+ +++ GC I  + +A  L+I Q  Y++SMVE FDVK  S IPAT G     K        E EE   +P REA+G +MW +T +R D++ AVRAVAR
Sbjct:   73 IIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVAR 198
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57833.13254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KPT0_9PHAE6.550e-2740.25Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KTL3_9PHAE1.510e-2439.62Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE2.860e-2439.62Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE2.920e-2439.62Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE2.930e-2439.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE2.940e-2439.62Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JQN6_9PHAE1.750e-2338.99Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K164_9PHAE3.180e-2338.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQW4_9PHAE3.400e-2338.36Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JRS6_9PHAE6.860e-2341.79Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57833contigH-elongata_contig57833:49..531 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score102.1
Seed ortholog evalue2.6e-19
Seed eggNOG ortholog65672.G4TWW2
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs227R3@155619,38DPC@33154,3H58M@355688,3NUZ7@4751,3UY7N@5204,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelAgaricomycetes incertae sedis
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size483
Cds size483
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930939.0069387-CDS-H-elongata_contig57833:48..5311622930939.0069387-CDS-H-elongata_contig57833:48..531Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57833 49..531 -
1691679632.8189363-CDS-H-elongata_contig57833:48..5311691679632.8189363-CDS-H-elongata_contig57833:48..531Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57833 49..531 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57833.13254.1prot_H-elongata_contig57833.13254.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig57833 49..531 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig57833.13254.1

>prot_H-elongata_contig57833.13254.1 ID=prot_H-elongata_contig57833.13254.1|Name=mRNA_H-elongata_contig57833.13254.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=161bp
VVVVVHVDDILAHAKDKVTMDRFAAELGQKFEMKYMGDARYYMGCHITGN
RKARELKIDQHLYVESMVETFDVKKGSNIPATSGVPTLSKADEPRNPEEK
EEMRTFPYREAVGMLMWTATMTRSDIAGAVRAVARLCENSGPAHKKAGMK
TMQYLLHTKD*
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mRNA from alignment at H-elongata_contig57833:49..531-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig57833.13254.1 ID=mRNA_H-elongata_contig57833.13254.1|Name=mRNA_H-elongata_contig57833.13254.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=483bp|location=Sequence derived from alignment at H-elongata_contig57833:49..531- (Himanthalia elongata Himel1 dioecious)
GTGGTGGTGGTCGTTCACGTGGACGATATTCTTGCTCACGCCAAGGACAA
AGTGACTATGGATAGATTCGCGGCTGAGCTCGGACAAAAGTTTGAAATGA
AGTACATGGGTGACGCCAGGTACTACATGGGATGTCACATTACTGGGAAC
CGCAAGGCGCGCGAGCTGAAGATCGACCAACACTTGTACGTTGAGTCGAT
GGTAGAAACGTTCGACGTCAAGAAGGGAAGCAATATACCGGCTACGTCGG
GAGTGCCAACACTCTCAAAGGCGGACGAGCCGCGGAACCCGGAGGAGAAG
GAGGAAATGAGGACGTTTCCATATCGGGAAGCAGTGGGGATGCTTATGTG
GACCGCGACGATGACACGGTCGGACATTGCAGGCGCTGTACGCGCTGTGG
CCAGGCTTTGCGAAAACTCTGGGCCAGCGCATAAGAAGGCAGGGATGAAG
ACTATGCAGTATCTCCTTCACACGAAGGATTAG
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Coding sequence (CDS) from alignment at H-elongata_contig57833:49..531-

>mRNA_H-elongata_contig57833.13254.1 ID=mRNA_H-elongata_contig57833.13254.1|Name=mRNA_H-elongata_contig57833.13254.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=966bp|location=Sequence derived from alignment at H-elongata_contig57833:49..531- (Himanthalia elongata Himel1 dioecious)
GTGGTGGTGGTCGTTCACGTGGACGATATTCTTGCTCACGCCAAGGACAA
AGTGACTATGGATAGATTCGCGGCTGAGCTCGGACAAAAGTTTGAAATGA
AGTACATGGGTGACGCCAGGTACTACATGGGATGTCACATTACTGGGAAC
CGCAAGGCGCGCGAGCTGAAGATCGACCAACACTTGTACGTTGAGTCGAT
GGTAGAAACGTTCGACGTCAAGAAGGGAAGCAATATACCGGCTACGTCGG
GAGTGCCAACACTCTCAAAGGCGGACGAGCCGCGGAACCCGGAGGAGAAG
GAGGAAATGAGGACGTTTCCATATCGGGAAGCAGTGGGGATGCTTATGTG
GACCGCGACGATGACACGGTCGGACATTGCAGGCGCTGTACGCGCTGTGG
CCAGGCTTTGCGAAAACTCTGGGCCAGCGCATAAGAAGGCAGGGATGAAG
ACTATGCAGTATCTCCTTCACACGAAGGATTAGGTGGTGGTGGTCGTTCA
CGTGGACGATATTCTTGCTCACGCCAAGGACAAAGTGACTATGGATAGAT
TCGCGGCTGAGCTCGGACAAAAGTTTGAAATGAAGTACATGGGTGACGCC
AGGTACTACATGGGATGTCACATTACTGGGAACCGCAAGGCGCGCGAGCT
GAAGATCGACCAACACTTGTACGTTGAGTCGATGGTAGAAACGTTCGACG
TCAAGAAGGGAAGCAATATACCGGCTACGTCGGGAGTGCCAACACTCTCA
AAGGCGGACGAGCCGCGGAACCCGGAGGAGAAGGAGGAAATGAGGACGTT
TCCATATCGGGAAGCAGTGGGGATGCTTATGTGGACCGCGACGATGACAC
GGTCGGACATTGCAGGCGCTGTACGCGCTGTGGCCAGGCTTTGCGAAAAC
TCTGGGCCAGCGCATAAGAAGGCAGGGATGAAGACTATGCAGTATCTCCT
TCACACGAAGGATTAG
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