prot_H-elongata_contig57833.13254.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig57833.13254.1
Unique Nameprot_H-elongata_contig57833.13254.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length161
Homology
BLAST of mRNA_H-elongata_contig57833.13254.1 vs. uniprot
Match: A0A6H5KPT0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPT0_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 6.550e-27
Identity = 64/159 (40.25%), Postives = 90/159 (56.60%), Query Frame = 0
Query:    2 VVVVHVDDILAHAKDKVTMDRFAAELGQKFEMKYMGDARYYMGCHITGNRKARELKIDQHLYVESMVETFDVKKGSNIPATSGVPTLSKADEPRNPEEKEEMRTFPYREAVGMLMWTATMTRSDIAGAVRAVARLCENSGPAHKKAGMKTMQYLLHTKD 160
            ++V++VDDIL    D+   + F A L +KF  K +G+ +++ GC I  + +A  L+I Q  Y++SMVE FDVK  S IPAT G     K        E EE   +P REA+G +MW +T +R D++ AVRAVAR        H  A  K + YL  T+D
Sbjct:    9 IIVIYVDDILVAGSDE-DFEEFLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRD 159          
BLAST of mRNA_H-elongata_contig57833.13254.1 vs. uniprot
Match: A0A6H5KTL3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL3_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 1.510e-24
Identity = 63/159 (39.62%), Postives = 89/159 (55.97%), Query Frame = 0
Query:    2 VVVVHVDDILAHAKDKVTMDRFAAELGQKFEMKYMGDARYYMGCHITGNRKARELKIDQHLYVESMVETFDVKKGSNIPATSGVPTLSKADEPRNPEEKEEMRTFPYREAVGMLMWTATMTRSDIAGAVRAVARLCENSGPAHKKAGMKTMQYLLHTKD 160
            ++V++VDDIL    D+   +   A L +KF  K +G+ +++ GC I  + +A  L+I Q  Y++SMVE FDVK  S IPAT G     K        E EE   +P REA+G +MW +T +R D++ AVRAVAR        H  A  K + YL  T+D
Sbjct:  216 IIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRD 366          
BLAST of mRNA_H-elongata_contig57833.13254.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 2.860e-24
Identity = 63/159 (39.62%), Postives = 89/159 (55.97%), Query Frame = 0
Query:    2 VVVVHVDDILAHAKDKVTMDRFAAELGQKFEMKYMGDARYYMGCHITGNRKARELKIDQHLYVESMVETFDVKKGSNIPATSGVPTLSKADEPRNPEEKEEMRTFPYREAVGMLMWTATMTRSDIAGAVRAVARLCENSGPAHKKAGMKTMQYLLHTKD 160
            ++V++VDDIL    D+   +   A L +KF  K +G+ +++ GC I  + +A  L+I Q  Y++SMVE FDVK  S IPAT G     K        E EE   +P REA+G +MW +T +R D++ AVRAVAR        H  A  K + YL  T+D
Sbjct:  929 IIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRD 1079          
BLAST of mRNA_H-elongata_contig57833.13254.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 2.920e-24
Identity = 63/159 (39.62%), Postives = 89/159 (55.97%), Query Frame = 0
Query:    2 VVVVHVDDILAHAKDKVTMDRFAAELGQKFEMKYMGDARYYMGCHITGNRKARELKIDQHLYVESMVETFDVKKGSNIPATSGVPTLSKADEPRNPEEKEEMRTFPYREAVGMLMWTATMTRSDIAGAVRAVARLCENSGPAHKKAGMKTMQYLLHTKD 160
            ++V++VDDIL    D+   +   A L +KF  K +G+ +++ GC I  + +A  L+I Q  Y++SMVE FDVK  S IPAT G     K        E EE   +P REA+G +MW +T +R D++ AVRAVAR        H  A  K + YL  T+D
Sbjct: 1308 IIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRD 1458          
BLAST of mRNA_H-elongata_contig57833.13254.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 2.930e-24
Identity = 63/159 (39.62%), Postives = 89/159 (55.97%), Query Frame = 0
Query:    2 VVVVHVDDILAHAKDKVTMDRFAAELGQKFEMKYMGDARYYMGCHITGNRKARELKIDQHLYVESMVETFDVKKGSNIPATSGVPTLSKADEPRNPEEKEEMRTFPYREAVGMLMWTATMTRSDIAGAVRAVARLCENSGPAHKKAGMKTMQYLLHTKD 160
            ++V++VDDIL    D+   +   A L +KF  K +G+ +++ GC I  + +A  L+I Q  Y++SMVE FDVK  S IPAT G     K        E EE   +P REA+G +MW +T +R D++ AVRAVAR        H  A  K + YL  T+D
Sbjct: 1328 IIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRD 1478          
BLAST of mRNA_H-elongata_contig57833.13254.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 2.940e-24
Identity = 63/159 (39.62%), Postives = 89/159 (55.97%), Query Frame = 0
Query:    2 VVVVHVDDILAHAKDKVTMDRFAAELGQKFEMKYMGDARYYMGCHITGNRKARELKIDQHLYVESMVETFDVKKGSNIPATSGVPTLSKADEPRNPEEKEEMRTFPYREAVGMLMWTATMTRSDIAGAVRAVARLCENSGPAHKKAGMKTMQYLLHTKD 160
            ++V++VDDIL    D+   +   A L +KF  K +G+ +++ GC I  + +A  L+I Q  Y++SMVE FDVK  S IPAT G     K        E EE   +P REA+G +MW +T +R D++ AVRAVAR        H  A  K + YL  T+D
Sbjct: 1471 IIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRD 1621          
BLAST of mRNA_H-elongata_contig57833.13254.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 1.750e-23
Identity = 62/159 (38.99%), Postives = 89/159 (55.97%), Query Frame = 0
Query:    2 VVVVHVDDILAHAKDKVTMDRFAAELGQKFEMKYMGDARYYMGCHITGNRKARELKIDQHLYVESMVETFDVKKGSNIPATSGVPTLSKADEPRNPEEKEEMRTFPYREAVGMLMWTATMTRSDIAGAVRAVARLCENSGPAHKKAGMKTMQYLLHTKD 160
            ++V++VDDIL    D+   +   A L +KF  K +G+ +++ GC I  +  A  L+I Q  Y++SMVE FDVK  S IPAT G     K ++ +  E       +P REAVG +MW +T +R D++ AVRAVAR        H  A  K + YL  T+D
Sbjct:  520 IIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDDKGGE-------WPVREAVGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRD 670          
BLAST of mRNA_H-elongata_contig57833.13254.1 vs. uniprot
Match: A0A6H5K164_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K164_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 3.180e-23
Identity = 61/159 (38.36%), Postives = 88/159 (55.35%), Query Frame = 0
Query:    2 VVVVHVDDILAHAKDKVTMDRFAAELGQKFEMKYMGDARYYMGCHITGNRKARELKIDQHLYVESMVETFDVKKGSNIPATSGVPTLSKADEPRNPEEKEEMRTFPYREAVGMLMWTATMTRSDIAGAVRAVARLCENSGPAHKKAGMKTMQYLLHTKD 160
            ++V++VDDIL    D+   +   A L +KF  K +G+ +++ GC I  +  A  L+I Q  Y++SMVE FDVK  S IPAT G     K        E EE   +P REA+G +MW +T +R D++ AVRAVAR        H  A  K + ++  T+D
Sbjct:  564 IIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGFMKGTRD 714          
BLAST of mRNA_H-elongata_contig57833.13254.1 vs. uniprot
Match: A0A6H5JQW4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQW4_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 3.400e-23
Identity = 61/159 (38.36%), Postives = 88/159 (55.35%), Query Frame = 0
Query:    2 VVVVHVDDILAHAKDKVTMDRFAAELGQKFEMKYMGDARYYMGCHITGNRKARELKIDQHLYVESMVETFDVKKGSNIPATSGVPTLSKADEPRNPEEKEEMRTFPYREAVGMLMWTATMTRSDIAGAVRAVARLCENSGPAHKKAGMKTMQYLLHTKD 160
            ++V++VDDIL    D+   +   A L +KF  K +G+ +++ GC I  + +A  L+I Q  Y++SMVE FDVK  S IPAT G     K        E EE   +P R+A+G +MW +T +R D++ A RAVAR        H  A  K + YL  T+D
Sbjct: 1038 IIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVRKAIGSMMWVSTFSRPDVSFAARAVARHAHAPAKRHWDAIQKILGYLKGTRD 1188          
BLAST of mRNA_H-elongata_contig57833.13254.1 vs. uniprot
Match: A0A6H5JRS6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRS6_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 6.860e-23
Identity = 56/134 (41.79%), Postives = 80/134 (59.70%), Query Frame = 0
Query:    2 VVVVHVDDILAHAKDKVTMDRFAAELGQKFEMKYMGDARYYMGCHITGNRKARELKIDQHLYVESMVETFDVKKGSNIPATSGVPTLSKADEPRNPEEKEEMRTFPYREAVGMLMWTATMTRSDIAGAVRAVAR 135
            ++V++VDDIL    D+   +   A L +KF  K +G+ +++ GC I  + +A  L+I Q  Y++SMVE FDVK  S IPAT G     K        E EE   +P REA+G +MW +T +R D++ AVRAVAR
Sbjct:   73 IIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVAR 198          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57833.13254.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KPT0_9PHAE6.550e-2740.25Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KTL3_9PHAE1.510e-2439.62Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE2.860e-2439.62Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE2.920e-2439.62Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE2.930e-2439.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE2.940e-2439.62Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JQN6_9PHAE1.750e-2338.99Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K164_9PHAE3.180e-2338.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQW4_9PHAE3.400e-2338.36Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JRS6_9PHAE6.860e-2341.79Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 2..75
e-value: 6.3E-11
score: 42.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57833contigH-elongata_contig57833:49..531 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57833.13254.1mRNA_H-elongata_contig57833.13254.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig57833 49..531 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig57833.13254.1 ID=prot_H-elongata_contig57833.13254.1|Name=mRNA_H-elongata_contig57833.13254.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=161bp
VVVVVHVDDILAHAKDKVTMDRFAAELGQKFEMKYMGDARYYMGCHITGN
RKARELKIDQHLYVESMVETFDVKKGSNIPATSGVPTLSKADEPRNPEEK
EEMRTFPYREAVGMLMWTATMTRSDIAGAVRAVARLCENSGPAHKKAGMK
TMQYLLHTKD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2