mRNA_H-elongata_contig57475.13215.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig57475.13215.1
Unique NamemRNA_H-elongata_contig57475.13215.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig57475.13215.1 vs. uniprot
Match: D8LDJ5_ECTSI (Ubiquitinyl hydrolase 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDJ5_ECTSI)

HSP 1 Score: 357 bits (916), Expect = 1.670e-119
Identity = 188/260 (72.31%), Postives = 211/260 (81.15%), Query Frame = 1
Query:   19 MSSLCGQHCINNLVQEARYSAGDLAEIAHELDRQEREHMLAEGVNTPDALRFLAEESGNVDAAGNFSIQVLNTALTRLYGVYLVSSGSESVGGNITTTGLACEDAFVLNRHSHWVAIRSIGGVYWDLNSMLDYPTRVTTFALEAYLHQLRQDGYSVFVVRGDPLPAPARQLGEGSRDSWYRVKDLLQASRGAGKGSGNAPSTAATDVWVNSGPGHRLDGRSGKANTMVAGVGRVGVETGDGGLGRGGGDEDDVALAIALS 798
            MSSLCGQHCINNLVQ A YSA DLA+IA ELD QER+HMLA G +TPDAL+FLAEESGNVDAAGNFSIQVLNTAL RLYG YLVS+GSESVG  ++TTG   EDAFVLNRH+HWVA+RSIGG YWDLNSMLD PTR+TTFALEAYLHQLR+DGYSVFVVRGD LP PA +  EGSRD WYRVKDLL+ SRG GKGSG A +TAATDVW+NSGPG RLDG      T   G G+ G ++G  G+       +D+ LA+A+S
Sbjct:    1 MSSLCGQHCINNLVQAASYSAADLADIALELDDQERQHMLAAGSDTPDALKFLAEESGNVDAAGNFSIQVLNTALKRLYGAYLVSAGSESVG-KLSTTGYDVEDAFVLNRHAHWVAVRSIGGAYWDLNSMLDNPTRITTFALEAYLHQLREDGYSVFVVRGDDLPPPATEPREGSRDCWYRVKDLLEVSRG-GKGSGGALNTAATDVWLNSGPGQRLDG-----GTTSKGPGKDGRDSGGAGMT----SAEDMQLAMAIS 249          
BLAST of mRNA_H-elongata_contig57475.13215.1 vs. uniprot
Match: A0A836CJ83_9STRA (Ubiquitinyl hydrolase 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ83_9STRA)

HSP 1 Score: 215 bits (547), Expect = 1.610e-66
Identity = 108/187 (57.75%), Postives = 137/187 (73.26%), Query Frame = 1
Query:   10 QKQMSSLCGQHCINNLVQEARYSAGDLAEIAHELDRQEREHMLAEGVNTPDALRFLAEESGNVDAAGNFSIQVLNTALTRLYGVYLVSSGSESVGGNITTTGLACEDAFVLNRHSHWVAIRSIGGVYWDLNSMLDYPTRVTTFALEAYLHQLRQDGYSVFVVRGDPLPAPARQ----LGEGSRDSWY 558
            +KQ SSLCGQHC+NNL+Q   ++A DLA+IAH LD +ER+ ML  G +TPDAL+F AE+SGNVD AGNFS+QVL+ ALT  YG+ L S+GSE V G ++TTG   E  FV NR +HW A+RS+GG YW+LNS L+ P  +T++ALEA LHQ R DGYSVFVVRG  LP P+ +       G+ + WY
Sbjct:    7 EKQESSLCGQHCLNNLLQACIFTAPDLADIAHVLDAKERQLMLELGHSTPDALKFQAEDSGNVDEAGNFSLQVLSEALTLRYGLRLESAGSERVAGKLSTTGYDSEAGFVCNRQAHWFAVRSVGGRYWNLNSTLERPEWITSYALEATLHQYRLDGYSVFVVRGGTLPPPSTEGPYGSDAGNAEDWY 193          
BLAST of mRNA_H-elongata_contig57475.13215.1 vs. uniprot
Match: A0A7S2SLM5_9STRA (Ubiquitinyl hydrolase 1 n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SLM5_9STRA)

HSP 1 Score: 186 bits (471), Expect = 4.060e-53
Identity = 104/227 (45.81%), Postives = 143/227 (63.00%), Query Frame = 1
Query:    1 VASQKQMSSLCGQHCINNLVQEARYSAGDLAEIAHELDRQEREHMLAEGVNTPDALRFLAEESGNVDAAGNFSIQVLNTALTRLYGVYLVSSGSESVGGNITTTGLACEDAFVLNRHSHWVAIRSIGGVYWDLNSMLDYPTRVTTFALEAYLHQLRQDGYSVFVVR-GDPLPAPAR---QLGEGSRDSWYRVKDLLQASRGAGKGSGNAPSTAATDVWVNSGPGHRL 669
            V  ++Q S+LCGQHC+NNL+Q   +S GDLA+IA E+DR ER+ ML  G  TP+AL+FLAE+SGNVD +GNFSIQVL  AL R + + L   G+ S+ G      L   DAF+ N+ +HW  +R + G+YW+LNSML+ P +V+ F L A+L QL+ DGY VF+V  G  LP P     + G G+   ++ V  L ++  G+  GS  A +    D W  +G G RL
Sbjct:   16 VYHERQESALCGQHCLNNLLQGTYFSPGDLADIAAEMDRLERQMMLEMGDATPEALKFLAEDSGNVDESGNFSIQVLKRALERSHELVLDHVGATSLEGQ----DLLSHDAFICNKSNHWFTVRKLYGLYWNLNSMLERPEKVSDFYLSAFLMQLQADGYDVFIVSPGANLPDPPHGGPEAGMGAASCFHTVSSLSRS--GSTAGSSTAAAGEQKDPWAMAGEGQRL 236          
BLAST of mRNA_H-elongata_contig57475.13215.1 vs. uniprot
Match: A0A7S1U677_9STRA (Ubiquitinyl hydrolase 1 n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U677_9STRA)

HSP 1 Score: 176 bits (446), Expect = 2.270e-49
Identity = 95/199 (47.74%), Postives = 129/199 (64.82%), Query Frame = 1
Query:    1 VASQKQMSSLCGQHCINNLVQEARYSAGDLAEIAHELDRQEREHMLAEGVNTPDALRFLAEESGNVDAAGNFSIQVLNTALTRLYGVYLVSSGSESVGGNITTTGLACEDAFVLNRHSHWVAIRSIGGVYWDLNSMLDYPTRVTTFALEAYLHQLRQDGYSVFVVRGDPLPAPARQLGEGSRDSWYRVKDLLQASRGAG 597
            V  ++Q+++LCGQHC+NNL+    ++   LAE+A ELD +E E MLA G  T DA RF+A+ SGNVD AGNFSIQVLNTA++R +G+ LV S SE + G +       + AFVLN+  HW+ +R  G  + DLNSM D P  V+ F L A+LHQL  DGY++F V G+ LP P +    G    ++ +  LL+ S GAG
Sbjct:    7 VYHERQLAALCGQHCLNNLLGGPYFTEFQLAEVAQELDAREAELMLAGGAGTEDARRFMAQPSGNVDEAGNFSIQVLNTAVSRSHGLSLVPSESEGLTGRVDADPSQFQ-AFVLNQSQHWITLRRYGDTWLDLNSMHDKPRVVSAFYLSAFLHQLVADGYNIFCVEGE-LPPPLQDPTMGDPSCFHVLASLLEGSGGAG 203          
BLAST of mRNA_H-elongata_contig57475.13215.1 vs. uniprot
Match: A0A7S0SUA2_9STRA (Ubiquitinyl hydrolase 1 n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SUA2_9STRA)

HSP 1 Score: 153 bits (386), Expect = 1.710e-41
Identity = 78/193 (40.41%), Postives = 115/193 (59.59%), Query Frame = 1
Query:   16 QMSSLCGQHCINNLVQEARYSAGDLAEIAHELDRQEREHMLAEGVNTPDALRFLAEESGNVDAAGNFSIQVLNTALTRLYGVYLVSSGSESVGGNITTTGLACEDAFVLNRHSHWVAIRSIGGVYWDLNSMLDYPTRVTTFALEAYLHQLRQDGYSVFVVRGDPLPAPARQLGEGSRDSWYRVKDLLQASRGA 594
            Q SSLCGQHC+NNL+QE  +++ DLAEIA +LD +E +++  +  N  +  RF+ E SGNVD +GNFS+QVL  AL  L+ + L+S  SE   G +       E+ F++N   HW  IR I  ++W+LNS +  P +++ F L A+L QL  +G SVFV RG   P    +        WY + +L++ +  A
Sbjct:   10 QESSLCGQHCLNNLLQEPYFTSIDLAEIAQQLDAKELQYLTEDNDNQMNINRFINEGSGNVDNSGNFSLQVLKEALKSLHNIDLISWTSEE--GRLDIIDPTIEEGFIINHSQHWYTIRKINDIWWNLNSTIQVPEKISPFYLSAFLSQLINEGSSVFVARGKIPPQKTSRGITSDNCKWYHIDELIKPTNNA 200          
BLAST of mRNA_H-elongata_contig57475.13215.1 vs. uniprot
Match: A0A4D9CP47_9STRA (Ubiquitinyl hydrolase 1 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CP47_9STRA)

HSP 1 Score: 154 bits (388), Expect = 2.120e-41
Identity = 116/296 (39.19%), Postives = 152/296 (51.35%), Query Frame = 1
Query:   10 QKQMSSLCGQHCINNLVQEARYSAGDLAEIAHELDRQEREHMLAEGVNTPDALRFLAEESGNVDAAGNFSIQVLNTALTRLYGVYLVS------SGSESVGGNITTTGLACEDA--------FVLNRHSHWVAIRSIGGVYWDLNSMLDY-PTRVTTFALEAYLHQLRQDGYSVFVVRGDPLPA---PARQLGEGSRD--SWYRVKDLLQASRGAGKGSGNAPSTAATDVWVNSGPGHRLDGRSGKANTMVAGVGRVGVETGDGGLGR----------GGGDEDDVALAIALSLQQ 807
            ++Q SSLCGQH +N L+    +S  DLAEIA ELD +E E MLA G  T DA++FLAE+S NV+A+G FS+ VL  AL R   + L+       S   S GG       A E A        F++NR  HW A+R +G  +W+LNS L+  P  V  F L A+L  L  +GYSVF+VRG+ LP    P    G G RD   WYRV DL+   +  G G G         +W       RL GR       VAG G  G+  G                GG +E+++A  IA+SL++
Sbjct:   23 ERQESSLCGQHALNALLIGPYFSPADLAEIAAELDAKEAELMLAAG-ETIDAMKFLAEDSENVNASGFFSVDVLRLALARFGAIELIPFQKISFSQPSSRGGGEGERDKAAEAAGDLTQELGFLVNRAEHWFALRRVGRRWWNLNSTLERGPEEVGRFYLSAFLEALVAEGYSVFLVRGEGLPERGYPEEGGGHGRRDIGMWYRVSDLVAGGQRRG-GDGEGGERGKRGLWG------RLTGRG----RDVAGEGTTGMGAGXXXXXXXXXXXXXXXXGGSEEEELARVIAMSLEE 306          
BLAST of mRNA_H-elongata_contig57475.13215.1 vs. uniprot
Match: A0A6V2A425_9STRA (Ubiquitinyl hydrolase 1 n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2A425_9STRA)

HSP 1 Score: 153 bits (387), Expect = 9.480e-41
Identity = 93/229 (40.61%), Postives = 129/229 (56.33%), Query Frame = 1
Query:   10 QKQMSSLCGQHCINNLVQEARYSAGDLAEIAHELDRQEREHMLAE---GVNTPDALRFLAEESGNVDAAGNFSIQVLNTALTRLYGVYLVSSGSESVGGNITTTGLACEDAFVLNRHSHWVAIRSIGGVYWDLNSMLDYPTRVTTFALEAYLHQLRQDGYSVFVVRGDPLPAPARQ---LGEGSRDSWYRVKDLLQASRGAGKGSGNAPSTAATDVWVNSGPGHRLDGR 678
            ++Q + LCGQH +NNLVQ   +S G LAEIA +LD+ E  +M      G  + D +R +AE SGNVDA+GNFSI+VL +AL     + L +   + +   +  T +   + F+ NR SHW AIR I G YW+LNS  + P +++ F L A +  L+Q+GYSVF V  D LP P         G    W++ +DL++    A         T ATD W N G G RLDG+
Sbjct:   14 ERQDALLCGQHALNNLVQACAFSPGMLAEIAQQLDQMELNYMAENDEGGTRSKDYIRRVAEGSGNVDASGNFSIEVLRSALLTQNNLSLPNIRQQGILDQMDITDI---EGFICNRESHWFAIRKINGRYWNLNSTKERPEQISHFRLAAEIEGLQQEGYSVFCVT-DALPPPCTTNEGRERGLPQYWWKEEDLVKDKTDA--------VTGATDPWKNVGSGMRLDGK 230          
BLAST of mRNA_H-elongata_contig57475.13215.1 vs. uniprot
Match: A0A7S2LJI3_9STRA (Ubiquitinyl hydrolase 1 n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LJI3_9STRA)

HSP 1 Score: 153 bits (386), Expect = 1.090e-40
Identity = 107/281 (38.08%), Postives = 150/281 (53.38%), Query Frame = 1
Query:    1 VASQKQMSSLCGQHCINNLVQEARYSAGDLAEIAHELDRQEREHMLAE---GVNTPDALRFLAEESGNVDAAGNFSIQVLNTALTRLYGVYLVSSGSESVGGNITTTGLACEDAFVLNRHSHWVAIRSIGGVYWDLNSMLDYPTRVTTFALEAYLHQLRQDGYSVFVVRGDPLPAPARQ---LGEGSRDSWYRVKDLLQASRGAGKGSGNAPSTAATDVWVNSGPGHRLDGRSGKANTMVAGVGRVGVETGDGGLGRGGGDEDDVALAIALSLQQDPPGGA 825
            V  ++Q + LCGQH +NNLVQ   ++   LAEIA +LD+ E  +M      GV++ D L+ LAE SGNVD +GNFSI+VL +AL   Y + L +   + +     TT     D F+ NR +HW AIR I   YW+LNS L+ P  ++ F L A +  L+  GYSVF V  D LP P      + +G    W++ +DLL       KG  NA  T A D W + G G RLDG  GK +++ AG     +            +E+ + +A+  SL+Q P   A
Sbjct:    5 VYHERQEAMLCGQHALNNLVQANAFTPVSLAEIAGQLDQMELNYMANNNEGGVSSKDYLKRLAEGSGNVDESGNFSIEVLRSALLSRYNIELPNIRQQGLSKVEVTT----MDGFICNRSAHWFAIRKINDRYWNLNSTLERPEVISHFRLAAEVEALQNSGYSVFCVV-DSLPPPCTNEAMMDQGLPKYWWKEEDLL-------KGKTNAM-TRADDPWKDVGSGRRLDG--GKKSSVGAGQQSKPISEMS--------EEEMLQMAMEASLEQAPQNNA 262          
BLAST of mRNA_H-elongata_contig57475.13215.1 vs. uniprot
Match: A0A7S2A2Q1_TRICV (Ubiquitinyl hydrolase 1 (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A2Q1_TRICV)

HSP 1 Score: 152 bits (383), Expect = 3.440e-40
Identity = 94/230 (40.87%), Postives = 127/230 (55.22%), Query Frame = 1
Query:   10 QKQMSSLCGQHCINNLVQEARYSAGDLAEIAHELDRQEREHMLAE---GVNTPDALRFLAEESGNVDAAGNFSIQVLNTALTRLYGVYLVSSGSESVGGNITTTGLACEDAFVLNRHSHWVAIRSIGGVYWDLNSMLDYPTRVTTFALEAYLHQLRQDGYSVFVVRGDPLPAP---ARQLGEGSRDSWYRVKDLLQASRGAGKGSGNAPSTAATDVWVNSGPGHRLDGRS 681
            ++Q + LCGQH +NNLVQE  +SA  LAEIAH+LD  E  +M      G+ + + L  +AE SGNVD  GNFSI+VL  AL   Y + L +   + V      T +   + F+ NR SHW AIR I G YW+LNS  + P  ++ F L A +   ++ GYSVF V    LP P   ++    G    W++ +DL+       KG  +A  T A D W N G G RLDG+S
Sbjct:   14 ERQDALLCGQHALNNLVQECVFSADALAEIAHQLDEMELTYMAQNNEGGIRSKEYLERVAEGSGNVDETGNFSIEVLRAALQNRYDMSLPNIAQQGVLDGKDVTDI---EGFICNRDSHWFAIRKINGRYWNLNSTKERPEFISQFRLAAEIQGFQEAGYSVFCVVDKKLPPPCITSQGRERGLPQYWWKEEDLV-------KGKADAI-TGANDPWRNVGGGMRLDGKS 232          
BLAST of mRNA_H-elongata_contig57475.13215.1 vs. uniprot
Match: A0A1E7EUB1_9STRA (Ubiquitinyl hydrolase 1 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EUB1_9STRA)

HSP 1 Score: 151 bits (382), Expect = 5.630e-40
Identity = 92/233 (39.48%), Postives = 129/233 (55.36%), Query Frame = 1
Query:   10 QKQMSSLCGQHCINNLVQEARYSAGDLAEIAHELDRQEREHMLAE---GVNTPDALRFLAEESGNVDAAGNFSIQVLNTALTRLYGVYLVSSGSESVGGNITTTGLACEDAFVLNRHSHWVAIRSIGGVYWDLNSMLDYPTRVTTFALEAYLHQLRQDGYSVFVVRGDPLPAPARQLGE--GSRDSWYRVKDLLQASRGAGKGSGNAPSTAATDVWVNSGPGHRLDGRSGKAN 693
            +KQ + LCGQH +NNLVQ   +SAG LAEIA++LD+ E ++M      G N+ D L  +AE SGNVD +GNFSI+VL +AL   Y + L +  ++ V        +   + F+ N+ +HW AIR I G +W+LNSM + P  ++ F L   +   +  GY+VF V      A   + G   G    W++  DL+       KG G    TAATD W  +G G RLDG S  A+
Sbjct:   12 EKQQALLCGQHALNNLVQANAFSAGQLAEIAYQLDQMELDYMAQNDEGGRNSKDYLNRIAEGSGNVDPSGNFSIEVLRSALKTKYSLDLPNVLAKDVNERFGVGDVTEMEGFICNKDAHWFAIRMINGRFWNLNSMDERPKIISHFKLATEIAGFQSSGYTVFCVPKGLPSACTTKAGSSVGLPQYWWKEDDLV-------KGKGKDAVTAATDTWRTAGSGMRLDGGSTSAS 237          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57475.13215.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDJ5_ECTSI1.670e-11972.31Ubiquitinyl hydrolase 1 n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CJ83_9STRA1.610e-6657.75Ubiquitinyl hydrolase 1 n=1 Tax=Tribonema minus Ta... [more]
A0A7S2SLM5_9STRA4.060e-5345.81Ubiquitinyl hydrolase 1 n=2 Tax=Rhizochromulina ma... [more]
A0A7S1U677_9STRA2.270e-4947.74Ubiquitinyl hydrolase 1 n=2 Tax=Phaeomonas parva T... [more]
A0A7S0SUA2_9STRA1.710e-4140.41Ubiquitinyl hydrolase 1 n=1 Tax=Chromulina nebulos... [more]
A0A4D9CP47_9STRA2.120e-4139.19Ubiquitinyl hydrolase 1 n=1 Tax=Nannochloropsis sa... [more]
A0A6V2A425_9STRA9.480e-4140.61Ubiquitinyl hydrolase 1 n=3 Tax=Ditylum brightwell... [more]
A0A7S2LJI3_9STRA1.090e-4038.08Ubiquitinyl hydrolase 1 n=1 Tax=Skeletonema marino... [more]
A0A7S2A2Q1_TRICV3.440e-4040.87Ubiquitinyl hydrolase 1 (Fragment) n=1 Tax=Trieres... [more]
A0A1E7EUB1_9STRA5.630e-4039.48Ubiquitinyl hydrolase 1 n=1 Tax=Fragilariopsis cyl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57475contigH-elongata_contig57475:323..3394 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score360.9
Seed ortholog evalue5.2e-97
Seed eggNOG ortholog2880.D8LDJ5
Preferred nameATXN3
KEGG koko:K11863
KEGG Pathwayko04141,map04141
GOsGO:0000226,GO:0001012,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0004843,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0005740,GO:0005759,GO:0005829,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006325,GO:0006464,GO:0006476,GO:0006508,GO:0006511,GO:0006515,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007010,GO:0007017,GO:0007154,GO:0007267,GO:0007268,GO:0007275,GO:0007399,GO:0007610,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009056,GO:0009057,GO:0009266,GO:0009408,GO:0009628,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010604,GO:0010810,GO:0016020,GO:0016043,GO:0016234,GO:0016569,GO:0016570,GO:0016575,GO:0016579,GO:0016787,GO:0019222,GO:0019538,GO:0019783,GO:0019899,GO:0019941,GO:0023052,GO:0030029,GO:0030036,GO:0030155,GO:0030162,GO:0030163,GO:0031090,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031625,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0033036,GO:0033554,GO:0034605,GO:0034641,GO:0034976,GO:0035520,GO:0035601,GO:0035640,GO:0035966,GO:0035967,GO:0036211,GO:0036459,GO:0036503,GO:0042176,GO:0042221,GO:0042405,GO:0042802,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043632,GO:0044212,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045103,GO:0045104,GO:0045732,GO:0045862,GO:0046483,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051117,GO:0051171,GO:0051173,GO:0051179,GO:0051246,GO:0051247,GO:0051276,GO:0051603,GO:0051716,GO:0051788,GO:0060255,GO:0061136,GO:0061578,GO:0065007,GO:0070011,GO:0070013,GO:0070536,GO:0070646,GO:0070647,GO:0070887,GO:0070932,GO:0071108,GO:0071218,GO:0071310,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0097159,GO:0098732,GO:0098916,GO:0099536,GO:0099537,GO:0101005,GO:0140096,GO:1901360,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901800,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1904292,GO:1904294,GO:1904327,GO:1904379,GO:1905897,GO:1905898,GO:1990380
EggNOG free text desc.protein localization to cytosolic proteasome complex
EggNOG OGsKOG2935@1,KOG2935@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUbiquitin-related domain
Ec32 orthologEc-15_000320.1
Exons6
Model size840
Cds size822
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930933.7277136-UTR-H-elongata_contig57475:322..3401622930933.7277136-UTR-H-elongata_contig57475:322..340Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57475 323..340 +
1691679630.6463454-UTR-H-elongata_contig57475:322..3401691679630.6463454-UTR-H-elongata_contig57475:322..340Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig57475 323..340 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930933.7429464-CDS-H-elongata_contig57475:340..4921622930933.7429464-CDS-H-elongata_contig57475:340..492Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57475 341..492 +
1691679630.660492-CDS-H-elongata_contig57475:340..4921691679630.660492-CDS-H-elongata_contig57475:340..492Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57475 341..492 +
1622930933.7615309-CDS-H-elongata_contig57475:1232..12871622930933.7615309-CDS-H-elongata_contig57475:1232..1287Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57475 1233..1287 +
1691679630.6781738-CDS-H-elongata_contig57475:1232..12871691679630.6781738-CDS-H-elongata_contig57475:1232..1287Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57475 1233..1287 +
1622930933.781554-CDS-H-elongata_contig57475:1534..16231622930933.781554-CDS-H-elongata_contig57475:1534..1623Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57475 1535..1623 +
1691679630.6884-CDS-H-elongata_contig57475:1534..16231691679630.6884-CDS-H-elongata_contig57475:1534..1623Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57475 1535..1623 +
1622930933.80228-CDS-H-elongata_contig57475:1950..20571622930933.80228-CDS-H-elongata_contig57475:1950..2057Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57475 1951..2057 +
1691679630.7094803-CDS-H-elongata_contig57475:1950..20571691679630.7094803-CDS-H-elongata_contig57475:1950..2057Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57475 1951..2057 +
1622930933.8198116-CDS-H-elongata_contig57475:2361..25321622930933.8198116-CDS-H-elongata_contig57475:2361..2532Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57475 2362..2532 +
1691679630.721878-CDS-H-elongata_contig57475:2361..25321691679630.721878-CDS-H-elongata_contig57475:2361..2532Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57475 2362..2532 +
1622930933.8341768-CDS-H-elongata_contig57475:3146..33941622930933.8341768-CDS-H-elongata_contig57475:3146..3394Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57475 3147..3394 +
1691679630.7322443-CDS-H-elongata_contig57475:3146..33941691679630.7322443-CDS-H-elongata_contig57475:3146..3394Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57475 3147..3394 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57475.13215.1prot_H-elongata_contig57475.13215.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig57475 341..3394 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig57475.13215.1

>prot_H-elongata_contig57475.13215.1 ID=prot_H-elongata_contig57475.13215.1|Name=mRNA_H-elongata_contig57475.13215.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=274bp
MSSLCGQHCINNLVQEARYSAGDLAEIAHELDRQEREHMLAEGVNTPDAL
RFLAEESGNVDAAGNFSIQVLNTALTRLYGVYLVSSGSESVGGNITTTGL
ACEDAFVLNRHSHWVAIRSIGGVYWDLNSMLDYPTRVTTFALEAYLHQLR
QDGYSVFVVRGDPLPAPARQLGEGSRDSWYRVKDLLQASRGAGKGSGNAP
STAATDVWVNSGPGHRLDGRSGKANTMVAGVGRVGVETGDGGLGRGGGDE
DDVALAIALSLQQDPPGGADIVL*
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mRNA from alignment at H-elongata_contig57475:323..3394+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig57475.13215.1 ID=mRNA_H-elongata_contig57475.13215.1|Name=mRNA_H-elongata_contig57475.13215.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3072bp|location=Sequence derived from alignment at H-elongata_contig57475:323..3394+ (Himanthalia elongata Himel1 dioecious)
GTCGCTTCTCAGAAACAGATGTCGAGTCTGTGCGGTCAGCACTGCATCAA CAATCTTGTTCAGGAAGCCAGGTACTCGGCGGGTGACCTGGCCGAGATCG CTCACGAGCTCGACCGCCAAGAGAGGGAACATATGCTGGCTGAGGGAGTC AACACCCCGGATGCCCTGCGGTCAGTTCGGCAGACGTCGCGCTCAAGGTT TAGGTCTCTCTTTACGGCGTATTTCTCAGATGCATGCTATCATTAGTACT ATTACTAGTAGTACGACCGCGATGCTGGCAAATCTGCAGGCGTTGGTCAA ACGACCTCGGCGATCGTAGATGACGTCCAACATTGTGCCAAGACCATACA TACAGTAGTGCAGTAGCACTCAACACCAGTCTTATCACCCTATAGTTTTT GCGCCTTCTCATCGTCAGCGATACAGCACTATTAATAATCATGCTAATAA TAACATATACTGTATTTTAAATCCTACTTGTAGTAATTAGTTTTTAACCA AGGTCACTTCATCTGAGGACAGCCTAGCTATCCGTATTTTATCAGGAAGG TTTCTGTAGAGACGTACTGGTATAGAGATAACTGCTATATTTGATATTTG GGGTTGTCAAAACGTCAAATATTTATAGTAGAGCGAAGAAATATTTCCAT GATGCCAGGAGGGTAACCCTGGTCTGACTGCTCGAAATAGTGTAATTCTA GGATGCCGAGACTGTCACTCGTACTGTTGGCCATAGACCATAGACGGTAG GTCGTAAAGCTACTGTACGGGGGTACGGTAAGAAAGGACGGTGGTCATCT CTACCGAAGTCCCGCTCCTGTGCCTAAGTGTTCCAGTTATCTTAGCATGC CTGTTTCGAGAAATTCGTCGAGAACATCTTCGTTTGACCCGCGATGCATC GATGCATCAGATTCCTGGCCGAAGAATCCGGAAACGTGGACGCCGCGGGC AACTTCTCTATTCAGGTGTACACTGTGCACAGCGTTTGGTACAGCAGCTC TAGTCTAGCTACGTCTGCACCTAGCCGTAAACTCGCATACGCAGCTCTAT TTTATGTTGCTAAGCCCTTGACCGCCCTTCGAATCGTGGCGGTGCTACTC ACCGCCCATTGAACTAGAGATATAATAGCTATGATTTGTACGGGTGTATC TTGTCTGATAACTACACTGGACGATGCTGGACTGACTTATTTGCTCCCCC TGCCTGGCACAGGTGCTAAACACGGCCCTGACGCGCCTGTACGGCGTATA CCTCGTGTCTTCGGGAAGCGAATCTGTTGGGGGTAACATCACCACAACCG GGTGAGGTCGATCAATAGCTTGCGTTGGTCGACTCCAAAGATGTGTTTCG GAAAGAGGGGGCGTTTTTTGCAACAAGGTGCTGAAAAAATTAACGTTAAT GCTATTAGAGAGAGGACGCGCGACTGCTTCGTGATGTTCGTTGTGTAATT TACTTCTAATATTAGAAGTATTAAGCTGTGTTTTCGGATGTTGAGACGAA AACGCCTGTCCAGTGGTATGCGCTCCATTGACTCTTCGATCTTCGGGTTG TGGAGCACTGGGGGATCATTTGATGACCGTTCTCCTTCTCCATCTATGTG TGTTGATGTCGTAAAAAATGCGCGACAGTCTGGCGTGCGAAGACGCTTTC GTCCTCAACAGGCATTCCCACTGGGTGGCTATCCGATCCATAGGAGGGGT GTACTGGGACCTTAACTCGATGCTCGACTACCCTAGTGAGTTAGCCGGCC AATGACCTATAGACCAAGCCCTACTTTTCCAATAATCAATCCAATACCAA TCGCCAATCGTGGCAAAAAGGTGCGCTCGAGGAAGACCAACCCTAACCCT TGTATCTTTATTAACAAGTCCCTAGGGGGCGGTAGACTATCTTACAGCCG CAGGGGTCTGTAATCGTCGAAAATCACCACTAACCACTCACGAATCGACC CAACTCGCGCCAATCTCTTCTGCCCGGGATCGACCAATCATATCGACGAA TCATGCTACTGCGATTTGTACGATCTGTCTCTTCTCTAGCGCGCGTTACC ACCTTTGCCCTCGAGGCCTACCTACACCAGCTGCGGCAGGACGGGTACTC CGTTTTCGTCGTCAGGGGAGACCCCTTGCCCGCTCCGGCCAGACAGCTAG GAGAGGGGTCAAGGGACAGCTGGTACCGCGTCAAAGACTTACTCCAAGCG TCAAGGGGAGGTGAGGATCTCTCTCTATATCGACTTCTATATAAATTTCA TCGCGCTCTTGGTGCGATCCAAATTCTTGATGTGCGCTGTGCGTCTACGT ATGCGAGGGTTAGGGCGTCGTCTCCTAAACTTTACCGAGATATGTCGTGT TCTTTTAGAGTGCCTCTACAACTCCTCGAGCGGGTGAGGGAATGAGCATC TTCTGGTAGCCACTTAAGCTCGAGTGCGACGGCAGTTTCTTAATTTATGT GTTAGGAGGAATTTTTTGGCTCGGAGTCGTGTCAGATGGCGTCACGGAAA ACCCTCCCCTCATTGTCAGACGAAAAAATCGAATCCGGAAAGGGTGAAAT TTCTTGATATAATTGCGTGATCTTGTCGCCCGATGTTGGCCATCCCGTTT CTCTGTCTCTCTCTCTCTCTCTGCCTGTGTGTATGTCTCTTGAGAGGCTG TCGACTCCAGTCTGCTGGGGTGACCAATATCGTAGCATCAATTTCCTGGC GTTTTCCGCATTATCGCACGAAATTCTTCTACCAACCAACAAACGGGAAA AAATGATCGAACTTGTAAAGTAATCTGGAAGGCGTTATCGTGTGGGTGGA CAAAATATTCCCGTCGGGCAGGAGCAGGAAAAGGATCGGGGAACGCACCA TCGACAGCTGCGACGGATGTGTGGGTCAACTCCGGCCCTGGGCACCGGTT GGACGGGCGGTCAGGCAAAGCGAACACGATGGTTGCAGGCGTCGGAAGAG TCGGCGTCGAGACCGGAGATGGGGGGCTAGGCCGCGGTGGTGGCGATGAG GACGACGTTGCTCTCGCGATCGCGCTTTCACTGCAACAAGACCCGCCAGG TGGAGCTGACATCGTTCTATGA
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Coding sequence (CDS) from alignment at H-elongata_contig57475:323..3394+

>mRNA_H-elongata_contig57475.13215.1 ID=mRNA_H-elongata_contig57475.13215.1|Name=mRNA_H-elongata_contig57475.13215.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1644bp|location=Sequence derived from alignment at H-elongata_contig57475:323..3394+ (Himanthalia elongata Himel1 dioecious)
ATGTCGAGTCTGTGCGGTCAGCACTGCATCAACAATCTTGTTCAGGAAGC
CAGGTACTCGGCGGGTGACCTGGCCGAGATCGCTCACGAGCTCGACCGCC
AAGAGAGGGAACATATGCTGGCTGAGGGAGTCAACACCCCGGATGCCCTG
CGATGTCGAGTCTGTGCGGTCAGCACTGCATCAACAATCTTGTTCAGGAA
GCCAGGTACTCGGCGGGTGACCTGGCCGAGATCGCTCACGAGCTCGACCG
CCAAGAGAGGGAACATATGCTGGCTGAGGGAGTCAACACCCCGGATGCCC
TGCGATTCCTGGCCGAAGAATCCGGAAACGTGGACGCCGCGGGCAACTTC
TCTATTCAGATTCCTGGCCGAAGAATCCGGAAACGTGGACGCCGCGGGCA
ACTTCTCTATTCAGGTGCTAAACACGGCCCTGACGCGCCTGTACGGCGTA
TACCTCGTGTCTTCGGGAAGCGAATCTGTTGGGGGTAACATCACCACAAC
CGGGTGCTAAACACGGCCCTGACGCGCCTGTACGGCGTATACCTCGTGTC
TTCGGGAAGCGAATCTGTTGGGGGTAACATCACCACAACCGGTCTGGCGT
GCGAAGACGCTTTCGTCCTCAACAGGCATTCCCACTGGGTGGCTATCCGA
TCCATAGGAGGGGTGTACTGGGACCTTAACTCGATGCTCGACTACCCTAT
CTGGCGTGCGAAGACGCTTTCGTCCTCAACAGGCATTCCCACTGGGTGGC
TATCCGATCCATAGGAGGGGTGTACTGGGACCTTAACTCGATGCTCGACT
ACCCTACGCGCGTTACCACCTTTGCCCTCGAGGCCTACCTACACCAGCTG
CGGCAGGACGGGTACTCCGTTTTCGTCGTCAGGGGAGACCCCTTGCCCGC
TCCGGCCAGACAGCTAGGAGAGGGGTCAAGGGACAGCTGGTACCGCGTCA
AAGACTTACTCCAAGCGTCAAGGGGAGCGCGCGTTACCACCTTTGCCCTC
GAGGCCTACCTACACCAGCTGCGGCAGGACGGGTACTCCGTTTTCGTCGT
CAGGGGAGACCCCTTGCCCGCTCCGGCCAGACAGCTAGGAGAGGGGTCAA
GGGACAGCTGGTACCGCGTCAAAGACTTACTCCAAGCGTCAAGGGGAGCA
GGAAAAGGATCGGGGAACGCACCATCGACAGCTGCGACGGATGTGTGGGT
CAACTCCGGCCCTGGGCACCGGTTGGACGGGCGGTCAGGCAAAGCGAACA
CGATGGTTGCAGGCGTCGGAAGAGTCGGCGTCGAGACCGGAGATGGGGGG
CTAGGCCGCGGTGGTGGCGATGAGGACGACGTTGCTCTCGCGATCGCGCT
TTCACTGCAACAAGACCCGCCAGGTGGAGCTGACATCGTTCTATGACAGG
AAAAGGATCGGGGAACGCACCATCGACAGCTGCGACGGATGTGTGGGTCA
ACTCCGGCCCTGGGCACCGGTTGGACGGGCGGTCAGGCAAAGCGAACACG
ATGGTTGCAGGCGTCGGAAGAGTCGGCGTCGAGACCGGAGATGGGGGGCT
AGGCCGCGGTGGTGGCGATGAGGACGACGTTGCTCTCGCGATCGCGCTTT
CACTGCAACAAGACCCGCCAGGTGGAGCTGACATCGTTCTATGA
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