mRNA_H-elongata_contig57475.13215.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig57475.13215.1 vs. uniprot
Match: D8LDJ5_ECTSI (Ubiquitinyl hydrolase 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDJ5_ECTSI) HSP 1 Score: 357 bits (916), Expect = 1.670e-119 Identity = 188/260 (72.31%), Postives = 211/260 (81.15%), Query Frame = 1
Query: 19 MSSLCGQHCINNLVQEARYSAGDLAEIAHELDRQEREHMLAEGVNTPDALRFLAEESGNVDAAGNFSIQVLNTALTRLYGVYLVSSGSESVGGNITTTGLACEDAFVLNRHSHWVAIRSIGGVYWDLNSMLDYPTRVTTFALEAYLHQLRQDGYSVFVVRGDPLPAPARQLGEGSRDSWYRVKDLLQASRGAGKGSGNAPSTAATDVWVNSGPGHRLDGRSGKANTMVAGVGRVGVETGDGGLGRGGGDEDDVALAIALS 798
MSSLCGQHCINNLVQ A YSA DLA+IA ELD QER+HMLA G +TPDAL+FLAEESGNVDAAGNFSIQVLNTAL RLYG YLVS+GSESVG ++TTG EDAFVLNRH+HWVA+RSIGG YWDLNSMLD PTR+TTFALEAYLHQLR+DGYSVFVVRGD LP PA + EGSRD WYRVKDLL+ SRG GKGSG A +TAATDVW+NSGPG RLDG T G G+ G ++G G+ +D+ LA+A+S
Sbjct: 1 MSSLCGQHCINNLVQAASYSAADLADIALELDDQERQHMLAAGSDTPDALKFLAEESGNVDAAGNFSIQVLNTALKRLYGAYLVSAGSESVG-KLSTTGYDVEDAFVLNRHAHWVAVRSIGGAYWDLNSMLDNPTRITTFALEAYLHQLREDGYSVFVVRGDDLPPPATEPREGSRDCWYRVKDLLEVSRG-GKGSGGALNTAATDVWLNSGPGQRLDG-----GTTSKGPGKDGRDSGGAGMT----SAEDMQLAMAIS 249
BLAST of mRNA_H-elongata_contig57475.13215.1 vs. uniprot
Match: A0A836CJ83_9STRA (Ubiquitinyl hydrolase 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ83_9STRA) HSP 1 Score: 215 bits (547), Expect = 1.610e-66 Identity = 108/187 (57.75%), Postives = 137/187 (73.26%), Query Frame = 1
Query: 10 QKQMSSLCGQHCINNLVQEARYSAGDLAEIAHELDRQEREHMLAEGVNTPDALRFLAEESGNVDAAGNFSIQVLNTALTRLYGVYLVSSGSESVGGNITTTGLACEDAFVLNRHSHWVAIRSIGGVYWDLNSMLDYPTRVTTFALEAYLHQLRQDGYSVFVVRGDPLPAPARQ----LGEGSRDSWY 558
+KQ SSLCGQHC+NNL+Q ++A DLA+IAH LD +ER+ ML G +TPDAL+F AE+SGNVD AGNFS+QVL+ ALT YG+ L S+GSE V G ++TTG E FV NR +HW A+RS+GG YW+LNS L+ P +T++ALEA LHQ R DGYSVFVVRG LP P+ + G+ + WY
Sbjct: 7 EKQESSLCGQHCLNNLLQACIFTAPDLADIAHVLDAKERQLMLELGHSTPDALKFQAEDSGNVDEAGNFSLQVLSEALTLRYGLRLESAGSERVAGKLSTTGYDSEAGFVCNRQAHWFAVRSVGGRYWNLNSTLERPEWITSYALEATLHQYRLDGYSVFVVRGGTLPPPSTEGPYGSDAGNAEDWY 193
BLAST of mRNA_H-elongata_contig57475.13215.1 vs. uniprot
Match: A0A7S2SLM5_9STRA (Ubiquitinyl hydrolase 1 n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SLM5_9STRA) HSP 1 Score: 186 bits (471), Expect = 4.060e-53 Identity = 104/227 (45.81%), Postives = 143/227 (63.00%), Query Frame = 1
Query: 1 VASQKQMSSLCGQHCINNLVQEARYSAGDLAEIAHELDRQEREHMLAEGVNTPDALRFLAEESGNVDAAGNFSIQVLNTALTRLYGVYLVSSGSESVGGNITTTGLACEDAFVLNRHSHWVAIRSIGGVYWDLNSMLDYPTRVTTFALEAYLHQLRQDGYSVFVVR-GDPLPAPAR---QLGEGSRDSWYRVKDLLQASRGAGKGSGNAPSTAATDVWVNSGPGHRL 669
V ++Q S+LCGQHC+NNL+Q +S GDLA+IA E+DR ER+ ML G TP+AL+FLAE+SGNVD +GNFSIQVL AL R + + L G+ S+ G L DAF+ N+ +HW +R + G+YW+LNSML+ P +V+ F L A+L QL+ DGY VF+V G LP P + G G+ ++ V L ++ G+ GS A + D W +G G RL
Sbjct: 16 VYHERQESALCGQHCLNNLLQGTYFSPGDLADIAAEMDRLERQMMLEMGDATPEALKFLAEDSGNVDESGNFSIQVLKRALERSHELVLDHVGATSLEGQ----DLLSHDAFICNKSNHWFTVRKLYGLYWNLNSMLERPEKVSDFYLSAFLMQLQADGYDVFIVSPGANLPDPPHGGPEAGMGAASCFHTVSSLSRS--GSTAGSSTAAAGEQKDPWAMAGEGQRL 236
BLAST of mRNA_H-elongata_contig57475.13215.1 vs. uniprot
Match: A0A7S1U677_9STRA (Ubiquitinyl hydrolase 1 n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U677_9STRA) HSP 1 Score: 176 bits (446), Expect = 2.270e-49 Identity = 95/199 (47.74%), Postives = 129/199 (64.82%), Query Frame = 1
Query: 1 VASQKQMSSLCGQHCINNLVQEARYSAGDLAEIAHELDRQEREHMLAEGVNTPDALRFLAEESGNVDAAGNFSIQVLNTALTRLYGVYLVSSGSESVGGNITTTGLACEDAFVLNRHSHWVAIRSIGGVYWDLNSMLDYPTRVTTFALEAYLHQLRQDGYSVFVVRGDPLPAPARQLGEGSRDSWYRVKDLLQASRGAG 597
V ++Q+++LCGQHC+NNL+ ++ LAE+A ELD +E E MLA G T DA RF+A+ SGNVD AGNFSIQVLNTA++R +G+ LV S SE + G + + AFVLN+ HW+ +R G + DLNSM D P V+ F L A+LHQL DGY++F V G+ LP P + G ++ + LL+ S GAG
Sbjct: 7 VYHERQLAALCGQHCLNNLLGGPYFTEFQLAEVAQELDAREAELMLAGGAGTEDARRFMAQPSGNVDEAGNFSIQVLNTAVSRSHGLSLVPSESEGLTGRVDADPSQFQ-AFVLNQSQHWITLRRYGDTWLDLNSMHDKPRVVSAFYLSAFLHQLVADGYNIFCVEGE-LPPPLQDPTMGDPSCFHVLASLLEGSGGAG 203
BLAST of mRNA_H-elongata_contig57475.13215.1 vs. uniprot
Match: A0A7S0SUA2_9STRA (Ubiquitinyl hydrolase 1 n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SUA2_9STRA) HSP 1 Score: 153 bits (386), Expect = 1.710e-41 Identity = 78/193 (40.41%), Postives = 115/193 (59.59%), Query Frame = 1
Query: 16 QMSSLCGQHCINNLVQEARYSAGDLAEIAHELDRQEREHMLAEGVNTPDALRFLAEESGNVDAAGNFSIQVLNTALTRLYGVYLVSSGSESVGGNITTTGLACEDAFVLNRHSHWVAIRSIGGVYWDLNSMLDYPTRVTTFALEAYLHQLRQDGYSVFVVRGDPLPAPARQLGEGSRDSWYRVKDLLQASRGA 594
Q SSLCGQHC+NNL+QE +++ DLAEIA +LD +E +++ + N + RF+ E SGNVD +GNFS+QVL AL L+ + L+S SE G + E+ F++N HW IR I ++W+LNS + P +++ F L A+L QL +G SVFV RG P + WY + +L++ + A
Sbjct: 10 QESSLCGQHCLNNLLQEPYFTSIDLAEIAQQLDAKELQYLTEDNDNQMNINRFINEGSGNVDNSGNFSLQVLKEALKSLHNIDLISWTSEE--GRLDIIDPTIEEGFIINHSQHWYTIRKINDIWWNLNSTIQVPEKISPFYLSAFLSQLINEGSSVFVARGKIPPQKTSRGITSDNCKWYHIDELIKPTNNA 200
BLAST of mRNA_H-elongata_contig57475.13215.1 vs. uniprot
Match: A0A4D9CP47_9STRA (Ubiquitinyl hydrolase 1 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CP47_9STRA) HSP 1 Score: 154 bits (388), Expect = 2.120e-41 Identity = 116/296 (39.19%), Postives = 152/296 (51.35%), Query Frame = 1
Query: 10 QKQMSSLCGQHCINNLVQEARYSAGDLAEIAHELDRQEREHMLAEGVNTPDALRFLAEESGNVDAAGNFSIQVLNTALTRLYGVYLVS------SGSESVGGNITTTGLACEDA--------FVLNRHSHWVAIRSIGGVYWDLNSMLDY-PTRVTTFALEAYLHQLRQDGYSVFVVRGDPLPA---PARQLGEGSRD--SWYRVKDLLQASRGAGKGSGNAPSTAATDVWVNSGPGHRLDGRSGKANTMVAGVGRVGVETGDGGLGR----------GGGDEDDVALAIALSLQQ 807
++Q SSLCGQH +N L+ +S DLAEIA ELD +E E MLA G T DA++FLAE+S NV+A+G FS+ VL AL R + L+ S S GG A E A F++NR HW A+R +G +W+LNS L+ P V F L A+L L +GYSVF+VRG+ LP P G G RD WYRV DL+ + G G G +W RL GR VAG G G+ G GG +E+++A IA+SL++
Sbjct: 23 ERQESSLCGQHALNALLIGPYFSPADLAEIAAELDAKEAELMLAAG-ETIDAMKFLAEDSENVNASGFFSVDVLRLALARFGAIELIPFQKISFSQPSSRGGGEGERDKAAEAAGDLTQELGFLVNRAEHWFALRRVGRRWWNLNSTLERGPEEVGRFYLSAFLEALVAEGYSVFLVRGEGLPERGYPEEGGGHGRRDIGMWYRVSDLVAGGQRRG-GDGEGGERGKRGLWG------RLTGRG----RDVAGEGTTGMGAGXXXXXXXXXXXXXXXXGGSEEEELARVIAMSLEE 306
BLAST of mRNA_H-elongata_contig57475.13215.1 vs. uniprot
Match: A0A6V2A425_9STRA (Ubiquitinyl hydrolase 1 n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2A425_9STRA) HSP 1 Score: 153 bits (387), Expect = 9.480e-41 Identity = 93/229 (40.61%), Postives = 129/229 (56.33%), Query Frame = 1
Query: 10 QKQMSSLCGQHCINNLVQEARYSAGDLAEIAHELDRQEREHMLAE---GVNTPDALRFLAEESGNVDAAGNFSIQVLNTALTRLYGVYLVSSGSESVGGNITTTGLACEDAFVLNRHSHWVAIRSIGGVYWDLNSMLDYPTRVTTFALEAYLHQLRQDGYSVFVVRGDPLPAPARQ---LGEGSRDSWYRVKDLLQASRGAGKGSGNAPSTAATDVWVNSGPGHRLDGR 678
++Q + LCGQH +NNLVQ +S G LAEIA +LD+ E +M G + D +R +AE SGNVDA+GNFSI+VL +AL + L + + + + T + + F+ NR SHW AIR I G YW+LNS + P +++ F L A + L+Q+GYSVF V D LP P G W++ +DL++ A T ATD W N G G RLDG+
Sbjct: 14 ERQDALLCGQHALNNLVQACAFSPGMLAEIAQQLDQMELNYMAENDEGGTRSKDYIRRVAEGSGNVDASGNFSIEVLRSALLTQNNLSLPNIRQQGILDQMDITDI---EGFICNRESHWFAIRKINGRYWNLNSTKERPEQISHFRLAAEIEGLQQEGYSVFCVT-DALPPPCTTNEGRERGLPQYWWKEEDLVKDKTDA--------VTGATDPWKNVGSGMRLDGK 230
BLAST of mRNA_H-elongata_contig57475.13215.1 vs. uniprot
Match: A0A7S2LJI3_9STRA (Ubiquitinyl hydrolase 1 n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LJI3_9STRA) HSP 1 Score: 153 bits (386), Expect = 1.090e-40 Identity = 107/281 (38.08%), Postives = 150/281 (53.38%), Query Frame = 1
Query: 1 VASQKQMSSLCGQHCINNLVQEARYSAGDLAEIAHELDRQEREHMLAE---GVNTPDALRFLAEESGNVDAAGNFSIQVLNTALTRLYGVYLVSSGSESVGGNITTTGLACEDAFVLNRHSHWVAIRSIGGVYWDLNSMLDYPTRVTTFALEAYLHQLRQDGYSVFVVRGDPLPAPARQ---LGEGSRDSWYRVKDLLQASRGAGKGSGNAPSTAATDVWVNSGPGHRLDGRSGKANTMVAGVGRVGVETGDGGLGRGGGDEDDVALAIALSLQQDPPGGA 825
V ++Q + LCGQH +NNLVQ ++ LAEIA +LD+ E +M GV++ D L+ LAE SGNVD +GNFSI+VL +AL Y + L + + + TT D F+ NR +HW AIR I YW+LNS L+ P ++ F L A + L+ GYSVF V D LP P + +G W++ +DLL KG NA T A D W + G G RLDG GK +++ AG + +E+ + +A+ SL+Q P A
Sbjct: 5 VYHERQEAMLCGQHALNNLVQANAFTPVSLAEIAGQLDQMELNYMANNNEGGVSSKDYLKRLAEGSGNVDESGNFSIEVLRSALLSRYNIELPNIRQQGLSKVEVTT----MDGFICNRSAHWFAIRKINDRYWNLNSTLERPEVISHFRLAAEVEALQNSGYSVFCVV-DSLPPPCTNEAMMDQGLPKYWWKEEDLL-------KGKTNAM-TRADDPWKDVGSGRRLDG--GKKSSVGAGQQSKPISEMS--------EEEMLQMAMEASLEQAPQNNA 262
BLAST of mRNA_H-elongata_contig57475.13215.1 vs. uniprot
Match: A0A7S2A2Q1_TRICV (Ubiquitinyl hydrolase 1 (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A2Q1_TRICV) HSP 1 Score: 152 bits (383), Expect = 3.440e-40 Identity = 94/230 (40.87%), Postives = 127/230 (55.22%), Query Frame = 1
Query: 10 QKQMSSLCGQHCINNLVQEARYSAGDLAEIAHELDRQEREHMLAE---GVNTPDALRFLAEESGNVDAAGNFSIQVLNTALTRLYGVYLVSSGSESVGGNITTTGLACEDAFVLNRHSHWVAIRSIGGVYWDLNSMLDYPTRVTTFALEAYLHQLRQDGYSVFVVRGDPLPAP---ARQLGEGSRDSWYRVKDLLQASRGAGKGSGNAPSTAATDVWVNSGPGHRLDGRS 681
++Q + LCGQH +NNLVQE +SA LAEIAH+LD E +M G+ + + L +AE SGNVD GNFSI+VL AL Y + L + + V T + + F+ NR SHW AIR I G YW+LNS + P ++ F L A + ++ GYSVF V LP P ++ G W++ +DL+ KG +A T A D W N G G RLDG+S
Sbjct: 14 ERQDALLCGQHALNNLVQECVFSADALAEIAHQLDEMELTYMAQNNEGGIRSKEYLERVAEGSGNVDETGNFSIEVLRAALQNRYDMSLPNIAQQGVLDGKDVTDI---EGFICNRDSHWFAIRKINGRYWNLNSTKERPEFISQFRLAAEIQGFQEAGYSVFCVVDKKLPPPCITSQGRERGLPQYWWKEEDLV-------KGKADAI-TGANDPWRNVGGGMRLDGKS 232
BLAST of mRNA_H-elongata_contig57475.13215.1 vs. uniprot
Match: A0A1E7EUB1_9STRA (Ubiquitinyl hydrolase 1 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EUB1_9STRA) HSP 1 Score: 151 bits (382), Expect = 5.630e-40 Identity = 92/233 (39.48%), Postives = 129/233 (55.36%), Query Frame = 1
Query: 10 QKQMSSLCGQHCINNLVQEARYSAGDLAEIAHELDRQEREHMLAE---GVNTPDALRFLAEESGNVDAAGNFSIQVLNTALTRLYGVYLVSSGSESVGGNITTTGLACEDAFVLNRHSHWVAIRSIGGVYWDLNSMLDYPTRVTTFALEAYLHQLRQDGYSVFVVRGDPLPAPARQLGE--GSRDSWYRVKDLLQASRGAGKGSGNAPSTAATDVWVNSGPGHRLDGRSGKAN 693
+KQ + LCGQH +NNLVQ +SAG LAEIA++LD+ E ++M G N+ D L +AE SGNVD +GNFSI+VL +AL Y + L + ++ V + + F+ N+ +HW AIR I G +W+LNSM + P ++ F L + + GY+VF V A + G G W++ DL+ KG G TAATD W +G G RLDG S A+
Sbjct: 12 EKQQALLCGQHALNNLVQANAFSAGQLAEIAYQLDQMELDYMAQNDEGGRNSKDYLNRIAEGSGNVDPSGNFSIEVLRSALKTKYSLDLPNVLAKDVNERFGVGDVTEMEGFICNKDAHWFAIRMINGRFWNLNSMDERPKIISHFKLATEIAGFQSSGYTVFCVPKGLPSACTTKAGSSVGLPQYWWKEDDLV-------KGKGKDAVTAATDTWRTAGSGMRLDGGSTSAS 237 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57475.13215.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig57475.13215.1 >prot_H-elongata_contig57475.13215.1 ID=prot_H-elongata_contig57475.13215.1|Name=mRNA_H-elongata_contig57475.13215.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=274bp MSSLCGQHCINNLVQEARYSAGDLAEIAHELDRQEREHMLAEGVNTPDALback to top mRNA from alignment at H-elongata_contig57475:323..3394+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig57475.13215.1 ID=mRNA_H-elongata_contig57475.13215.1|Name=mRNA_H-elongata_contig57475.13215.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3072bp|location=Sequence derived from alignment at H-elongata_contig57475:323..3394+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig57475:323..3394+ >mRNA_H-elongata_contig57475.13215.1 ID=mRNA_H-elongata_contig57475.13215.1|Name=mRNA_H-elongata_contig57475.13215.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1644bp|location=Sequence derived from alignment at H-elongata_contig57475:323..3394+ (Himanthalia elongata Himel1 dioecious)back to top |