mRNA_H-elongata_contig55550.12975.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55550.12975.1
Unique NamemRNA_H-elongata_contig55550.12975.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig55550.12975.1 vs. uniprot
Match: A0A813LBA2_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813LBA2_POLGL)

HSP 1 Score: 52.0 bits (123), Expect = 4.990e-6
Identity = 23/52 (44.23%), Postives = 36/52 (69.23%), Query Frame = 1
Query:   43 QGGNHKKSAELLQEMSARGMSPNTISYNSAIYACGRGGEWQLALDLLDLMRK 198
            +G   + + EL   + ARG+ P+T+++NS + ACGRG +W LAL+LL  +RK
Sbjct:  551 RGARWRWALELGAGLGARGLRPDTVTWNSGLSACGRGEQWPLALELLSKVRK 602          
BLAST of mRNA_H-elongata_contig55550.12975.1 vs. uniprot
Match: A0A813LIW3_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813LIW3_POLGL)

HSP 1 Score: 51.2 bits (121), Expect = 9.250e-6
Identity = 22/36 (61.11%), Postives = 29/36 (80.56%), Query Frame = 1
Query:   73 LLQEMSARGMSPNTISYNSAIYACGRGGEWQLALDL 180
            LL +M  R + P+ IS+NSAI ACGRGG+W+LA+DL
Sbjct:    4 LLMDMPQRPLEPDQISFNSAISACGRGGQWRLAVDL 39          
BLAST of mRNA_H-elongata_contig55550.12975.1 vs. uniprot
Match: A0A7S2BFW1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BFW1_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 1.010e-5
Identity = 21/38 (55.26%), Postives = 30/38 (78.95%), Query Frame = 1
Query:   94 RGMSPNTISYNSAIYACGRGGEWQLALDLLDLMRKSGL 207
            RG+ PN IS+N+AI AC +GG+W+ AL LLD M+++ L
Sbjct:    3 RGVKPNVISFNAAIDACAKGGQWEKALSLLDEMQQNDL 40          
BLAST of mRNA_H-elongata_contig55550.12975.1 vs. uniprot
Match: A0A813L1V5_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813L1V5_POLGL)

HSP 1 Score: 50.1 bits (118), Expect = 2.310e-5
Identity = 23/46 (50.00%), Postives = 33/46 (71.74%), Query Frame = 1
Query:   70 ELLQEMSARGMSPNTISYNSAIYACGRGGEWQLALDLLDLMRKSGL 207
            ELL+  + RG+ P+++S NS I ACGRGG+W L+L LL  M ++ L
Sbjct:  208 ELLRASTVRGVMPDSVSCNSCIAACGRGGQWHLSLALLRAMPEARL 253          
BLAST of mRNA_H-elongata_contig55550.12975.1 vs. uniprot
Match: A0A7S2FHK7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FHK7_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 2.340e-5
Identity = 21/38 (55.26%), Postives = 30/38 (78.95%), Query Frame = 1
Query:   94 RGMSPNTISYNSAIYACGRGGEWQLALDLLDLMRKSGL 207
            RG+ PN IS+N+AI AC +GG+W+ AL LLD M+++ L
Sbjct:    3 RGVKPNVISFNAAIDACAKGGQWEKALSLLDEMQQNDL 40          
BLAST of mRNA_H-elongata_contig55550.12975.1 vs. uniprot
Match: A0A813DKC4_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813DKC4_POLGL)

HSP 1 Score: 50.1 bits (118), Expect = 2.420e-5
Identity = 23/46 (50.00%), Postives = 33/46 (71.74%), Query Frame = 1
Query:   70 ELLQEMSARGMSPNTISYNSAIYACGRGGEWQLALDLLDLMRKSGL 207
            ELL+  + RG+ P+++S NS I ACGRGG+W L+L LL  M ++ L
Sbjct:  207 ELLRASTVRGVMPDSVSCNSCIAACGRGGQWHLSLALLRAMPEARL 252          
BLAST of mRNA_H-elongata_contig55550.12975.1 vs. uniprot
Match: D8LMP8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMP8_ECTSI)

HSP 1 Score: 49.3 bits (116), Expect = 4.510e-5
Identity = 20/44 (45.45%), Postives = 32/44 (72.73%), Query Frame = 1
Query:   73 LLQEMSARGMSPNTISYNSAIYACGRGGEWQLALDLLDLMRKSG 204
            L++EM A G++P+  ++ +AI ACG+ G+W+ ALDLL+ M   G
Sbjct:  179 LMEEMRAEGVAPDVFTFTTAITACGKAGQWERALDLLEEMGGGG 222          
BLAST of mRNA_H-elongata_contig55550.12975.1 vs. uniprot
Match: A0A7S2ALK4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2ALK4_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 6.030e-5
Identity = 17/38 (44.74%), Postives = 30/38 (78.95%), Query Frame = 1
Query:   82 EMSARGMSPNTISYNSAIYACGRGGEWQLALDLLDLMR 195
            EM   G++PN +S+N+AI ACG+ G+W+ A+++L +M+
Sbjct:    2 EMRDNGVNPNVVSFNAAISACGKAGQWEKAIEVLQMMQ 39          
BLAST of mRNA_H-elongata_contig55550.12975.1 vs. uniprot
Match: A0A813DR20_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813DR20_POLGL)

HSP 1 Score: 47.4 bits (111), Expect = 7.200e-5
Identity = 20/29 (68.97%), Postives = 25/29 (86.21%), Query Frame = 1
Query:  106 PNTISYNSAIYACGRGGEWQLALDLLDLM 192
            PN I+YN+AI AC +GG+WQLAL+LL LM
Sbjct:    8 PNEITYNAAISACEKGGQWQLALNLLSLM 36          
BLAST of mRNA_H-elongata_contig55550.12975.1 vs. uniprot
Match: A0A6H5K4Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4Z1_9PHAE)

HSP 1 Score: 48.5 bits (114), Expect = 7.780e-5
Identity = 20/34 (58.82%), Postives = 29/34 (85.29%), Query Frame = 1
Query:  106 PNTISYNSAIYACGRGGEWQLALDLLDLMRKSGL 207
            P+TI++N+AI ACGRG +W+ A++LLD MR+ GL
Sbjct:  178 PDTITFNTAITACGRGKKWKPAVELLDSMRREGL 211          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55550.12975.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A813LBA2_POLGL4.990e-644.23Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A813LIW3_POLGL9.250e-661.11Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A7S2BFW1_9STRA1.010e-555.26Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A813L1V5_POLGL2.310e-550.00Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A7S2FHK7_9STRA2.340e-555.26Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A813DKC4_POLGL2.420e-550.00Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
D8LMP8_ECTSI4.510e-545.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2ALK4_9STRA6.030e-544.74Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A813DR20_POLGL7.200e-568.97Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A6H5K4Z1_9PHAE7.780e-558.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55550contigH-elongata_contig55550:898..1107 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size210
Cds size210
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930905.76574-CDS-H-elongata_contig55550:897..11071622930905.76574-CDS-H-elongata_contig55550:897..1107Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55550 898..1107 +
1691679619.2739217-CDS-H-elongata_contig55550:897..11071691679619.2739217-CDS-H-elongata_contig55550:897..1107Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55550 898..1107 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55550.12975.1prot_H-elongata_contig55550.12975.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55550 898..1107 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55550.12975.1

>prot_H-elongata_contig55550.12975.1 ID=prot_H-elongata_contig55550.12975.1|Name=mRNA_H-elongata_contig55550.12975.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp
MPHRANDTHVLVLTQGGNHKKSAELLQEMSARGMSPNTISYNSAIYACGR
GGEWQLALDLLDLMRKSGLT
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mRNA from alignment at H-elongata_contig55550:898..1107+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55550.12975.1 ID=mRNA_H-elongata_contig55550.12975.1|Name=mRNA_H-elongata_contig55550.12975.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=210bp|location=Sequence derived from alignment at H-elongata_contig55550:898..1107+ (Himanthalia elongata Himel1 dioecious)
ATGCCCCATCGAGCGAACGATACCCACGTCTTGGTGTTAACTCAGGGCGG GAATCACAAGAAGTCTGCCGAGCTTCTGCAGGAGATGAGCGCCCGTGGAA TGTCTCCTAACACGATCAGCTACAACTCCGCCATCTACGCCTGTGGAAGG GGTGGAGAGTGGCAGCTCGCGCTCGATCTCCTGGACCTGATGCGGAAGTC AGGCCTGACG
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Coding sequence (CDS) from alignment at H-elongata_contig55550:898..1107+

>mRNA_H-elongata_contig55550.12975.1 ID=mRNA_H-elongata_contig55550.12975.1|Name=mRNA_H-elongata_contig55550.12975.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=420bp|location=Sequence derived from alignment at H-elongata_contig55550:898..1107+ (Himanthalia elongata Himel1 dioecious)
ATGCCCCATCGAGCGAACGATACCCACGTCTTGGTGTTAACTCAGGGCGG
GAATCACAAGAAGTCTGCCGAGCTTCTGCAGGAGATGAGCGCCCGTGGAA
TGTCTCCTAACACGATCAGCTACAACTCCGCCATCTACGCCTGTGGAAGG
GGTGGAGAGTGGCAGCTCGCGCTCGATCTCCTGGACCTGATGCGGAAGTC
AGGCCTGACGATGCCCCATCGAGCGAACGATACCCACGTCTTGGTGTTAA
CTCAGGGCGGGAATCACAAGAAGTCTGCCGAGCTTCTGCAGGAGATGAGC
GCCCGTGGAATGTCTCCTAACACGATCAGCTACAACTCCGCCATCTACGC
CTGTGGAAGGGGTGGAGAGTGGCAGCTCGCGCTCGATCTCCTGGACCTGA
TGCGGAAGTCAGGCCTGACG
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