prot_H-elongata_contig55550.12975.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig55550.12975.1
Unique Nameprot_H-elongata_contig55550.12975.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length70
Homology
[Close]
BLAST of mRNA_H-elongata_contig55550.12975.1 vs. uniprot
Match: A0A813LBA2_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813LBA2_POLGL)

HSP 1 Score: 52.0 bits (123), Expect = 4.990e-6
Identity = 23/52 (44.23%), Postives = 36/52 (69.23%), Query Frame = 0 
Query:   15 QGGNHKKSAELLQEMSARGMSPNTISYNSAIYACGRGGEWQLALDLLDLMRK 66
            +G   + + EL   + ARG+ P+T+++NS + ACGRG +W LAL+LL  +RK
Sbjct:  551 RGARWRWALELGAGLGARGLRPDTVTWNSGLSACGRGEQWPLALELLSKVRK 602
[Close]
BLAST of mRNA_H-elongata_contig55550.12975.1 vs. uniprot
Match: A0A813LIW3_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813LIW3_POLGL)

HSP 1 Score: 51.2 bits (121), Expect = 9.250e-6
Identity = 22/36 (61.11%), Postives = 29/36 (80.56%), Query Frame = 0 
Query:   25 LLQEMSARGMSPNTISYNSAIYACGRGGEWQLALDL 60
            LL +M  R + P+ IS+NSAI ACGRGG+W+LA+DL
Sbjct:    4 LLMDMPQRPLEPDQISFNSAISACGRGGQWRLAVDL 39
[Close]
BLAST of mRNA_H-elongata_contig55550.12975.1 vs. uniprot
Match: A0A7S2BFW1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BFW1_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 1.010e-5
Identity = 21/38 (55.26%), Postives = 30/38 (78.95%), Query Frame = 0 
Query:   32 RGMSPNTISYNSAIYACGRGGEWQLALDLLDLMRKSGL 69
            RG+ PN IS+N+AI AC +GG+W+ AL LLD M+++ L
Sbjct:    3 RGVKPNVISFNAAIDACAKGGQWEKALSLLDEMQQNDL 40
[Close]
BLAST of mRNA_H-elongata_contig55550.12975.1 vs. uniprot
Match: A0A6H5JZN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZN1_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 1.260e-5
Identity = 25/49 (51.02%), Postives = 37/49 (75.51%), Query Frame = 0 
Query:   15 QGGNHKKSAELLQEMSARGMSPNTISYNSAIYACGRGG---EWQLALDL 60
            +GG+H  +A LL++M + G+ PN++SYN  I++C RGG   EW+LALDL
Sbjct:  284 KGGSHWAAARLLKKMKSLGLRPNSLSYNPIIHSC-RGGTDEEWRLALDL 331
[Close]
BLAST of mRNA_H-elongata_contig55550.12975.1 vs. uniprot
Match: A0A813L1V5_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813L1V5_POLGL)

HSP 1 Score: 50.1 bits (118), Expect = 2.310e-5
Identity = 23/46 (50.00%), Postives = 33/46 (71.74%), Query Frame = 0 
Query:   24 ELLQEMSARGMSPNTISYNSAIYACGRGGEWQLALDLLDLMRKSGL 69
            ELL+  + RG+ P+++S NS I ACGRGG+W L+L LL  M ++ L
Sbjct:  208 ELLRASTVRGVMPDSVSCNSCIAACGRGGQWHLSLALLRAMPEARL 253
[Close]
BLAST of mRNA_H-elongata_contig55550.12975.1 vs. uniprot
Match: A0A7S2FHK7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FHK7_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 2.340e-5
Identity = 21/38 (55.26%), Postives = 30/38 (78.95%), Query Frame = 0 
Query:   32 RGMSPNTISYNSAIYACGRGGEWQLALDLLDLMRKSGL 69
            RG+ PN IS+N+AI AC +GG+W+ AL LLD M+++ L
Sbjct:    3 RGVKPNVISFNAAIDACAKGGQWEKALSLLDEMQQNDL 40
[Close]
BLAST of mRNA_H-elongata_contig55550.12975.1 vs. uniprot
Match: D7G0G1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0G1_ECTSI)

HSP 1 Score: 50.1 bits (118), Expect = 2.380e-5
Identity = 25/49 (51.02%), Postives = 36/49 (73.47%), Query Frame = 0 
Query:   15 QGGNHKKSAELLQEMSARGMSPNTISYNSAIYACGRGG---EWQLALDL 60
            +GG+H  +A LL +M + G+ PN++SYN  I++C RGG   EW+LALDL
Sbjct:  459 RGGSHWAAARLLTKMKSLGLRPNSLSYNPIIHSC-RGGTDEEWRLALDL 506
[Close]
BLAST of mRNA_H-elongata_contig55550.12975.1 vs. uniprot
Match: A0A813DKC4_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813DKC4_POLGL)

HSP 1 Score: 50.1 bits (118), Expect = 2.420e-5
Identity = 23/46 (50.00%), Postives = 33/46 (71.74%), Query Frame = 0 
Query:   24 ELLQEMSARGMSPNTISYNSAIYACGRGGEWQLALDLLDLMRKSGL 69
            ELL+  + RG+ P+++S NS I ACGRGG+W L+L LL  M ++ L
Sbjct:  207 ELLRASTVRGVMPDSVSCNSCIAACGRGGQWHLSLALLRAMPEARL 252
[Close]
BLAST of mRNA_H-elongata_contig55550.12975.1 vs. uniprot
Match: D8LMP8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMP8_ECTSI)

HSP 1 Score: 49.3 bits (116), Expect = 4.510e-5
Identity = 20/44 (45.45%), Postives = 32/44 (72.73%), Query Frame = 0 
Query:   25 LLQEMSARGMSPNTISYNSAIYACGRGGEWQLALDLLDLMRKSG 68
            L++EM A G++P+  ++ +AI ACG+ G+W+ ALDLL+ M   G
Sbjct:  179 LMEEMRAEGVAPDVFTFTTAITACGKAGQWERALDLLEEMGGGG 222
[Close]
BLAST of mRNA_H-elongata_contig55550.12975.1 vs. uniprot
Match: A0A7S2ALK4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2ALK4_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 6.030e-5
Identity = 17/38 (44.74%), Postives = 30/38 (78.95%), Query Frame = 0 
Query:   28 EMSARGMSPNTISYNSAIYACGRGGEWQLALDLLDLMR 65
            EM   G++PN +S+N+AI ACG+ G+W+ A+++L +M+
Sbjct:    2 EMRDNGVNPNVVSFNAAISACGKAGQWEKAIEVLQMMQ 39
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55550.12975.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A813LBA2_POLGL4.990e-644.23Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A813LIW3_POLGL9.250e-661.11Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A7S2BFW1_9STRA1.010e-555.26Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A6H5JZN1_9PHAE1.260e-551.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A813L1V5_POLGL2.310e-550.00Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A7S2FHK7_9STRA2.340e-555.26Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
D7G0G1_ECTSI2.380e-551.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A813DKC4_POLGL2.420e-550.00Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
D8LMP8_ECTSI4.510e-545.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2ALK4_9STRA6.030e-544.74Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]

Pages

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 39..69
e-value: 1.1E-6
score: 28.5
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 39..69
e-value: 4.4E-8
score: 30.8
coord: 13..38
e-value: 0.0015
score: 16.6
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 2..36
score: 6.281
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 37..70
score: 10.972
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 9..70
e-value: 9.8E-14
score: 53.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55550contigH-elongata_contig55550:898..1107 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55550.12975.1mRNA_H-elongata_contig55550.12975.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig55550 898..1107 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig55550.12975.1 ID=prot_H-elongata_contig55550.12975.1|Name=mRNA_H-elongata_contig55550.12975.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp
MPHRANDTHVLVLTQGGNHKKSAELLQEMSARGMSPNTISYNSAIYACGR
GGEWQLALDLLDLMRKSGLT
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf