mRNA_H-elongata_contig55550.12975.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig55550.12975.1 vs. uniprot
Match: A0A813LBA2_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813LBA2_POLGL) HSP 1 Score: 52.0 bits (123), Expect = 4.990e-6 Identity = 23/52 (44.23%), Postives = 36/52 (69.23%), Query Frame = 1
Query: 43 QGGNHKKSAELLQEMSARGMSPNTISYNSAIYACGRGGEWQLALDLLDLMRK 198
+G + + EL + ARG+ P+T+++NS + ACGRG +W LAL+LL +RK
Sbjct: 551 RGARWRWALELGAGLGARGLRPDTVTWNSGLSACGRGEQWPLALELLSKVRK 602
BLAST of mRNA_H-elongata_contig55550.12975.1 vs. uniprot
Match: A0A813LIW3_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813LIW3_POLGL) HSP 1 Score: 51.2 bits (121), Expect = 9.250e-6 Identity = 22/36 (61.11%), Postives = 29/36 (80.56%), Query Frame = 1
Query: 73 LLQEMSARGMSPNTISYNSAIYACGRGGEWQLALDL 180
LL +M R + P+ IS+NSAI ACGRGG+W+LA+DL
Sbjct: 4 LLMDMPQRPLEPDQISFNSAISACGRGGQWRLAVDL 39
BLAST of mRNA_H-elongata_contig55550.12975.1 vs. uniprot
Match: A0A7S2BFW1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BFW1_9STRA) HSP 1 Score: 50.1 bits (118), Expect = 1.010e-5 Identity = 21/38 (55.26%), Postives = 30/38 (78.95%), Query Frame = 1
Query: 94 RGMSPNTISYNSAIYACGRGGEWQLALDLLDLMRKSGL 207
RG+ PN IS+N+AI AC +GG+W+ AL LLD M+++ L
Sbjct: 3 RGVKPNVISFNAAIDACAKGGQWEKALSLLDEMQQNDL 40
BLAST of mRNA_H-elongata_contig55550.12975.1 vs. uniprot
Match: A0A813L1V5_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813L1V5_POLGL) HSP 1 Score: 50.1 bits (118), Expect = 2.310e-5 Identity = 23/46 (50.00%), Postives = 33/46 (71.74%), Query Frame = 1
Query: 70 ELLQEMSARGMSPNTISYNSAIYACGRGGEWQLALDLLDLMRKSGL 207
ELL+ + RG+ P+++S NS I ACGRGG+W L+L LL M ++ L
Sbjct: 208 ELLRASTVRGVMPDSVSCNSCIAACGRGGQWHLSLALLRAMPEARL 253
BLAST of mRNA_H-elongata_contig55550.12975.1 vs. uniprot
Match: A0A7S2FHK7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FHK7_9STRA) HSP 1 Score: 50.1 bits (118), Expect = 2.340e-5 Identity = 21/38 (55.26%), Postives = 30/38 (78.95%), Query Frame = 1
Query: 94 RGMSPNTISYNSAIYACGRGGEWQLALDLLDLMRKSGL 207
RG+ PN IS+N+AI AC +GG+W+ AL LLD M+++ L
Sbjct: 3 RGVKPNVISFNAAIDACAKGGQWEKALSLLDEMQQNDL 40
BLAST of mRNA_H-elongata_contig55550.12975.1 vs. uniprot
Match: A0A813DKC4_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813DKC4_POLGL) HSP 1 Score: 50.1 bits (118), Expect = 2.420e-5 Identity = 23/46 (50.00%), Postives = 33/46 (71.74%), Query Frame = 1
Query: 70 ELLQEMSARGMSPNTISYNSAIYACGRGGEWQLALDLLDLMRKSGL 207
ELL+ + RG+ P+++S NS I ACGRGG+W L+L LL M ++ L
Sbjct: 207 ELLRASTVRGVMPDSVSCNSCIAACGRGGQWHLSLALLRAMPEARL 252
BLAST of mRNA_H-elongata_contig55550.12975.1 vs. uniprot
Match: D8LMP8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMP8_ECTSI) HSP 1 Score: 49.3 bits (116), Expect = 4.510e-5 Identity = 20/44 (45.45%), Postives = 32/44 (72.73%), Query Frame = 1
Query: 73 LLQEMSARGMSPNTISYNSAIYACGRGGEWQLALDLLDLMRKSG 204
L++EM A G++P+ ++ +AI ACG+ G+W+ ALDLL+ M G
Sbjct: 179 LMEEMRAEGVAPDVFTFTTAITACGKAGQWERALDLLEEMGGGG 222
BLAST of mRNA_H-elongata_contig55550.12975.1 vs. uniprot
Match: A0A7S2ALK4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2ALK4_9STRA) HSP 1 Score: 47.8 bits (112), Expect = 6.030e-5 Identity = 17/38 (44.74%), Postives = 30/38 (78.95%), Query Frame = 1
Query: 82 EMSARGMSPNTISYNSAIYACGRGGEWQLALDLLDLMR 195
EM G++PN +S+N+AI ACG+ G+W+ A+++L +M+
Sbjct: 2 EMRDNGVNPNVVSFNAAISACGKAGQWEKAIEVLQMMQ 39
BLAST of mRNA_H-elongata_contig55550.12975.1 vs. uniprot
Match: A0A813DR20_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813DR20_POLGL) HSP 1 Score: 47.4 bits (111), Expect = 7.200e-5 Identity = 20/29 (68.97%), Postives = 25/29 (86.21%), Query Frame = 1
Query: 106 PNTISYNSAIYACGRGGEWQLALDLLDLM 192
PN I+YN+AI AC +GG+WQLAL+LL LM
Sbjct: 8 PNEITYNAAISACEKGGQWQLALNLLSLM 36
BLAST of mRNA_H-elongata_contig55550.12975.1 vs. uniprot
Match: A0A6H5K4Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4Z1_9PHAE) HSP 1 Score: 48.5 bits (114), Expect = 7.780e-5 Identity = 20/34 (58.82%), Postives = 29/34 (85.29%), Query Frame = 1
Query: 106 PNTISYNSAIYACGRGGEWQLALDLLDLMRKSGL 207
P+TI++N+AI ACGRG +W+ A++LLD MR+ GL
Sbjct: 178 PDTITFNTAITACGRGKKWKPAVELLDSMRREGL 211 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55550.12975.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig55550.12975.1 >prot_H-elongata_contig55550.12975.1 ID=prot_H-elongata_contig55550.12975.1|Name=mRNA_H-elongata_contig55550.12975.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp MPHRANDTHVLVLTQGGNHKKSAELLQEMSARGMSPNTISYNSAIYACGRback to top mRNA from alignment at H-elongata_contig55550:898..1107+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig55550.12975.1 ID=mRNA_H-elongata_contig55550.12975.1|Name=mRNA_H-elongata_contig55550.12975.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=210bp|location=Sequence derived from alignment at H-elongata_contig55550:898..1107+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig55550:898..1107+ >mRNA_H-elongata_contig55550.12975.1 ID=mRNA_H-elongata_contig55550.12975.1|Name=mRNA_H-elongata_contig55550.12975.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=420bp|location=Sequence derived from alignment at H-elongata_contig55550:898..1107+ (Himanthalia elongata Himel1 dioecious)back to top |