mRNA_H-elongata_contig55399.12955.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig55399.12955.1 vs. uniprot
Match: D8LME1_ECTSI (Similarities to vacuolar protein sorting-associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LME1_ECTSI) HSP 1 Score: 376 bits (966), Expect = 2.430e-123 Identity = 189/220 (85.91%), Postives = 203/220 (92.27%), Query Frame = 1
Query: 1 QVKIYFALMHLHPLDVRVTYRSTPGSEVQDAEELTLSTIAQLDNARLCLNALQLEHAFGGRGVFAEVILKHYKMAFLTQASRGVHNVVGSFDFLGDPVGLLSNLSTGVKDFFYEPLEGLKPDGKGFLYGLGKGGTSLVSNTMQGTFNTFNKVTGSLGDTISHLSLDTDYRKMRVRERLVQGETMADSMAQGAKEFGRGVFQGVTGVIMQVQLSPQLHGSL 660
+VKIYFALMHLHPLDVR+TYR TPGS+VQDAEELTLST+AQL++ARLCLNALQLEHAFGGR VFAEV+LKHYK AFL+Q VH VVGSFDFLGDPVGLLSNLSTGVKDFFYEP+EGLKPDGKGFLYGLGKGGTSLVSNTMQGTFNTFNKVTGSLGDTIS LSLDTDYRK RVRERLV+GETMADSMAQGAKEFGRG+FQGVTGV+M+ L + G L
Sbjct: 145 EVKIYFALMHLHPLDVRITYRGTPGSDVQDAEELTLSTMAQLNDARLCLNALQLEHAFGGRAVFAEVMLKHYKFAFLSQ----VHKVVGSFDFLGDPVGLLSNLSTGVKDFFYEPIEGLKPDGKGFLYGLGKGGTSLVSNTMQGTFNTFNKVTGSLGDTISQLSLDTDYRKRRVRERLVEGETMADSMAQGAKEFGRGIFQGVTGVVMEPYLGAEKEGVL 360
BLAST of mRNA_H-elongata_contig55399.12955.1 vs. uniprot
Match: A0A6H5K0E6_9PHAE (PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0E6_9PHAE) HSP 1 Score: 373 bits (957), Expect = 1.010e-115 Identity = 188/220 (85.45%), Postives = 202/220 (91.82%), Query Frame = 1
Query: 1 QVKIYFALMHLHPLDVRVTYRSTPGSEVQDAEELTLSTIAQLDNARLCLNALQLEHAFGGRGVFAEVILKHYKMAFLTQASRGVHNVVGSFDFLGDPVGLLSNLSTGVKDFFYEPLEGLKPDGKGFLYGLGKGGTSLVSNTMQGTFNTFNKVTGSLGDTISHLSLDTDYRKMRVRERLVQGETMADSMAQGAKEFGRGVFQGVTGVIMQVQLSPQLHGSL 660
+VKIYFALMHLHPLDVR+TYR TPGS+VQDAEELTLST+AQL++ARLCLNALQLEHAFGGR VFAEV+LKHYK AFL+Q VH VVGSFDFLGDPVGLLSNLSTGVKDFFYEP+EGLKPDGKGFLYGLGKGGTSLVSNTMQGTFNTFNKVTGSLGDTIS LSLDT YRK RVRERLV+GETMADSMAQGAKEFGRG+FQGVTGV+M+ L + G L
Sbjct: 2187 EVKIYFALMHLHPLDVRITYRGTPGSDVQDAEELTLSTMAQLNDARLCLNALQLEHAFGGRAVFAEVMLKHYKFAFLSQ----VHKVVGSFDFLGDPVGLLSNLSTGVKDFFYEPIEGLKPDGKGFLYGLGKGGTSLVSNTMQGTFNTFNKVTGSLGDTISQLSLDTGYRKRRVRERLVEGETMADSMAQGAKEFGRGIFQGVTGVVMEPYLGAEKGGVL 2402
BLAST of mRNA_H-elongata_contig55399.12955.1 vs. uniprot
Match: A0A835ZA73_9STRA (PH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA73_9STRA) HSP 1 Score: 224 bits (571), Expect = 7.440e-64 Identity = 124/218 (56.88%), Postives = 150/218 (68.81%), Query Frame = 1
Query: 1 QVKIYFALMHLHPLDVRVTYRSTPGSEV-----------QDAEEL-TLSTIAQLDNARLCLNALQLEHAFGGRGVFAEVILKHYKMAFLTQASRGVHNVVGSFDFLGDPVGLLSNLSTGVKDFFYEPLEGLKPDGKGFLYGLGKGGTSLVSNTMQGTFNTFNKVTGSLGDTISHLSLDTDYRKMRVRERLVQGETMADSMAQGAKEFGRGVFQGVTGV 618
Q K+Y ALM LHP+D+R+TY+S PG E + A EL +ST+A+L+ A LCLNALQLEH FGGRG ++L+HYKMA L Q VVGSF FLGDPV L+SN+STGVKD FYEPLEGLKPDG GFL GLG+GG SLVSNT+ GTFNTF+KVTG++G+TI+ LSLD Y++ R R R+ AK+FGR GV GV
Sbjct: 2105 QPKVYVALMRLHPIDLRLTYKSLPGGEDGGAXXXXXREGEGAAELGAISTLAELEGASLCLNALQLEHTFGGRGQVLGLVLRHYKMALLRQLG----GVVGSFAFLGDPVRLMSNISTGVKDLFYEPLEGLKPDGGGFLQGLGRGGQSLVSNTLGGTFNTFDKVTGAMGNTIALLSLDAAYQRDRARARMAXXXXXXXXXTC-AKDFGRSSLDGVMGV 2317
BLAST of mRNA_H-elongata_contig55399.12955.1 vs. uniprot
Match: A0A482SSP7_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SSP7_9ARCH) HSP 1 Score: 169 bits (427), Expect = 1.620e-44 Identity = 82/207 (39.61%), Postives = 132/207 (63.77%), Query Frame = 1
Query: 4 VKIYFALMHLHPLDVRVTYRSTPGSEVQDAEELTLSTIAQLDNARLCLNALQLEHAFGGRGVFAEVILKHYKMAFLTQASRGVHNVVGSFDFLGDPVGLLSNLSTGVKDFFYEPLEGLKPDGKGFLYGLGKGGTSLVSNTMQGTFNTFNKVTGSLGDTISHLSLDTDYRKMRVRERLVQGETMADSMAQGAKEFGRGVFQGVTGVIM 624
+ +YF L+ LHPLDV + +R +P ++ +AE +S I+QLD ARLCLNAL E+AFG + +E+I+KHY+ +F Q H ++G+ D + VGL++N+ TG D FYEP++GL FL GL KGG SL S + GT + +TG +G +S L+LD+D+++ R R + ++++ + G +E G+ + +GVTG+++
Sbjct: 2636 LNLYFGLLQLHPLDVTLNFRPSPEVQISNAELAAMSIISQLDAARLCLNALIAENAFGSTTIISEIIIKHYRASFWRQ----FHKLIGATDIVEGSVGLVANIGTGFYDLFYEPIDGLLDSNSSFLNGLSKGGKSLASRAIGGTSAFTSTITGGIGKGVSLLTLDSDFQRNRSLRRFNKTTSVSEGLMVGTQELGKNIMEGVTGIVV 2838
BLAST of mRNA_H-elongata_contig55399.12955.1 vs. uniprot
Match: A0A3R7JGP2_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JGP2_9STRA) HSP 1 Score: 164 bits (414), Expect = 8.400e-43 Identity = 96/263 (36.50%), Postives = 141/263 (53.61%), Query Frame = 1
Query: 7 KIYFALMHLHPLDVRVTYRS------------------------TPGSEVQ-----------------DAEELTLSTIAQ----LDNARLCLNALQLEHAFGGRGVFAEVILKHYKMAFLTQASRGVHNVVGSFDFLGDPVGLLSNLSTGVKDFFYEPLEGLKPDGKGFLYGLGKGGTSLVSNTMQGTFNTFNKVTGSLGDTISHLSLDTDYRKMRVRERLVQGETMADSMAQGAKEFGRGVFQGVTGVIMQVQLSPQLHGSL 660
K+YFAL+H+HP+D +T+RS T G E++ A T+ ++ LDNA + LNAL +EHAFG + K+Y Q + +H ++GSFDFLG+PVG L ++ TGV+DF YEPLEGLK GKGF GL KG SL++NT+ GTF+ +K++G+ G ++LSLD Y+ R R R + + + QG+KE GV++GVTG+++ Q G++
Sbjct: 663 KVYFALLHIHPMDFDITFRSDVFQTTTTISLHEAASFKKSKISTTHGDEMKRSSSAPSAFGEGGGDDSSAMSWTIPSLTMHVPDLDNAPVRLNALMIEHAFGTSSDLTRRVSKYYTR----QLWKQLHKILGSFDFLGNPVGFLDHIGTGVRDFVYEPLEGLKIGGKGFSKGLAKGTASLMTNTVDGTFDAASKISGTFGQGFANLSLDDHYQHNRARARRRHVRGLREGLVQGSKELSLGVYEGVTGLVLNPMRGAQESGAV 921
BLAST of mRNA_H-elongata_contig55399.12955.1 vs. uniprot
Match: H3HCA5_PHYRM (Mannosyltransferase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HCA5_PHYRM) HSP 1 Score: 164 bits (414), Expect = 8.630e-43 Identity = 95/263 (36.12%), Postives = 139/263 (52.85%), Query Frame = 1
Query: 7 KIYFALMHLHPLDVRVTYRS----------------------------------TPGSEVQDAEELTLST-----------IAQLDNARLCLNALQLEHAFGGRGVFAEVILKHYKMAFLTQASRGVHNVVGSFDFLGDPVGLLSNLSTGVKDFFYEPLEGLKPDGKGFLYGLGKGGTSLVSNTMQGTFNTFNKVTGSLGDTISHLSLDTDYRKMRVRERLVQGETMADSMAQGAKEFGRGVFQGVTGVIMQVQLSPQLHGSL 660
K+YFAL+H+HP+D +T+RS P S + E + S + LDNA + LNAL +EHAFG G + K+Y Q + +H ++GSFDFLG+PVG L ++ TGV+DF YEPLEGLK GKGF GL KG SL++NT+ GTF+ +K++G+ G ++LSLD Y++ R R R + + + QG+KE GV++GV G+++ Q G++
Sbjct: 778 KVYFALLHIHPMDFDITFRSDVFQTTTTISLHEAASFKKSKITGNHDEMKRSSSAPSSFGEAGSEDSSSAMTWAIPSLTMHVPDLDNAPVRLNALMIEHAFGTSGDLTRRVSKYYTR----QLWKQLHKILGSFDFLGNPVGFLDHIGTGVRDFVYEPLEGLKIGGKGFSKGLAKGTASLMTNTVDGTFDAASKISGTFGQGFANLSLDDHYQQNRARARRRHVRGLREGLVQGSKELSLGVYEGVAGLVLNPMRGAQESGAV 1036
BLAST of mRNA_H-elongata_contig55399.12955.1 vs. uniprot
Match: A0A3F2RL93_9STRA (Mannosyltransferase n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RL93_9STRA) HSP 1 Score: 164 bits (414), Expect = 8.640e-43 Identity = 96/263 (36.50%), Postives = 141/263 (53.61%), Query Frame = 1
Query: 7 KIYFALMHLHPLDVRVTYRS------------------------TPGSEVQ-----------------DAEELTLSTIAQ----LDNARLCLNALQLEHAFGGRGVFAEVILKHYKMAFLTQASRGVHNVVGSFDFLGDPVGLLSNLSTGVKDFFYEPLEGLKPDGKGFLYGLGKGGTSLVSNTMQGTFNTFNKVTGSLGDTISHLSLDTDYRKMRVRERLVQGETMADSMAQGAKEFGRGVFQGVTGVIMQVQLSPQLHGSL 660
K+YFAL+H+HP+D +T+RS T G E++ A T+ ++ LDNA + LNAL +EHAFG + K+Y Q + +H ++GSFDFLG+PVG L ++ TGV+DF YEPLEGLK GKGF GL KG SL++NT+ GTF+ +K++G+ G ++LSLD Y+ R R R + + + QG+KE GV++GVTG+++ Q G++
Sbjct: 756 KVYFALLHIHPMDFDITFRSDVFQTTTTISLHEAASFKKSKISTTHGDEMKRSSSAPSAFGEGGGDDSSAMSWTIPSLTMHVPDLDNAPVRLNALMIEHAFGTSSDLTRRVSKYYTR----QLWKQLHKILGSFDFLGNPVGFLDHIGTGVRDFVYEPLEGLKIGGKGFSKGLAKGTASLMTNTVDGTFDAASKISGTFGQGFANLSLDDHYQHNRARARRRHVRGLREGLVQGSKELSLGVYEGVTGLVLNPMRGAQESGAV 1014
BLAST of mRNA_H-elongata_contig55399.12955.1 vs. uniprot
Match: A0A6A3U5U2_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3U5U2_9STRA) HSP 1 Score: 164 bits (414), Expect = 9.020e-43 Identity = 94/264 (35.61%), Postives = 139/264 (52.65%), Query Frame = 1
Query: 7 KIYFALMHLHPLDVRVTYRS------------------------------------------TPGSEVQDAEELTLSTIAQ----LDNARLCLNALQLEHAFGGRGVFAEVILKHYKMAFLTQASRGVHNVVGSFDFLGDPVGLLSNLSTGVKDFFYEPLEGLKPDGKGFLYGLGKGGTSLVSNTMQGTFNTFNKVTGSLGDTISHLSLDTDYRKMRVRERLVQGETMADSMAQGAKEFGRGVFQGVTGVIMQVQLSPQLHGSL 660
K+YFAL+H+HP+D +T+RS T G E A + ++ LDNA + LNAL +EHAFG G + K+Y Q + +H ++GSFDFLG+PVG L ++ TGV+DF YEPLEGLK GKGF GL KG SL++NT+ GTF+ +K++G+ G ++LSLD Y++ R R R + + + QG++E GV++GV G+++ Q G++
Sbjct: 3245 KVYFALLHIHPMDFDITFRSDVFQTSTTISLHEAASFKKMKMAGGHADELKRSSSAPFSFGETSGDESSSAMTWAIPSLTMHVPDLDNAPVRLNALMIEHAFGTSGDLTRRVSKYYTR----QLWKQLHKILGSFDFLGNPVGFLDHIGTGVRDFVYEPLEGLKIGGKGFSKGLAKGTASLMTNTVDGTFDAASKISGTFGQGFANLSLDDHYQQHRARARRRHVRGVREGLVQGSRELSLGVYEGVAGLVLNPMRGAQESGAV 3504
BLAST of mRNA_H-elongata_contig55399.12955.1 vs. uniprot
Match: W2Q5C4_PHYPN (Uncharacterized protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2Q5C4_PHYPN) HSP 1 Score: 160 bits (404), Expect = 1.990e-41 Identity = 93/260 (35.77%), Postives = 139/260 (53.46%), Query Frame = 1
Query: 7 KIYFALMHLHPLDVRVTYRS--------------------------------TPGS----EVQDAEELTLST------IAQLDNARLCLNALQLEHAFGGRGVFAEVILKHYKMAFLTQASRGVHNVVGSFDFLGDPVGLLSNLSTGVKDFFYEPLEGLKPDGKGFLYGLGKGGTSLVSNTMQGTFNTFNKVTGSLGDTISHLSLDTDYRKMRVRERLVQGETMADSMAQGAKEFGRGVFQGVTGVIMQVQLSPQLHGSL 660
K+YFAL+H+HP+D +T+RS P S +D+ +T + + LDNA + LNAL +EHAFG G + K+Y Q + +H ++GSFDFLG+PVG L ++ TGV+DF YEPLEGLK GKGF GL SL+SNT+ GTF+ +K++G+ G ++LSLD Y++ R R R + + + QG++E GV++GV G+++ Q G++
Sbjct: 3860 KVYFALLHIHPMDFDITFRSDVFQTSTTISLHEAASFKKASSHADEMKRSSSAPSSFGDSSGEDSSSVTWAIPSLTMHVPDLDNAPVRLNALMIEHAFGTSGDLTRRVSKYYTR----QLWKQLHKILGSFDFLGNPVGFLDHIGTGVRDFVYEPLEGLKIGGKGFSKGLXXXTASLMSNTVDGTFDAASKISGTFGQGFANLSLDDHYQQNRARARRRHVRGLREGLVQGSRELSLGVYEGVAGLVLNPMRGAQESGAV 4115
BLAST of mRNA_H-elongata_contig55399.12955.1 vs. uniprot
Match: V9EYS4_PHYPR (Uncharacterized protein n=6 Tax=Phytophthora parasitica TaxID=4792 RepID=V9EYS4_PHYPR) HSP 1 Score: 160 bits (404), Expect = 1.990e-41 Identity = 93/260 (35.77%), Postives = 139/260 (53.46%), Query Frame = 1
Query: 7 KIYFALMHLHPLDVRVTYRS--------------------------------TPGS----EVQDAEELTLST------IAQLDNARLCLNALQLEHAFGGRGVFAEVILKHYKMAFLTQASRGVHNVVGSFDFLGDPVGLLSNLSTGVKDFFYEPLEGLKPDGKGFLYGLGKGGTSLVSNTMQGTFNTFNKVTGSLGDTISHLSLDTDYRKMRVRERLVQGETMADSMAQGAKEFGRGVFQGVTGVIMQVQLSPQLHGSL 660
K+YFAL+H+HP+D +T+RS P S +D+ +T + + LDNA + LNAL +EHAFG G + K+Y Q + +H ++GSFDFLG+PVG L ++ TGV+DF YEPLEGLK GKGF GL SL+SNT+ GTF+ +K++G+ G ++LSLD Y++ R R R + + + QG++E GV++GV G+++ Q G++
Sbjct: 3860 KVYFALLHIHPMDFDITFRSDVFQTSTTISLHEAASFKKASSHADEMKRSSSAPSSFGDSSGEDSSSVTWAIPSLTMHVPDLDNAPVRLNALMIEHAFGTSGDLTRRVSKYYTR----QLWKQLHKILGSFDFLGNPVGFLDHIGTGVRDFVYEPLEGLKIGGKGFSKGLXXXTASLMSNTVDGTFDAASKISGTFGQGFANLSLDDHYQQNRARARRRHVRGLREGLVQGSRELSLGVYEGVAGLVLNPMRGAQESGAV 4115 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55399.12955.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig55399.12955.1 >prot_H-elongata_contig55399.12955.1 ID=prot_H-elongata_contig55399.12955.1|Name=mRNA_H-elongata_contig55399.12955.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=214bp MHLHPLDVRVTYRSTPGSEVQDAEELTLSTIAQLDNARLCLNALQLEHAFback to top mRNA from alignment at H-elongata_contig55399:454..3658+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig55399.12955.1 ID=mRNA_H-elongata_contig55399.12955.1|Name=mRNA_H-elongata_contig55399.12955.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3205bp|location=Sequence derived from alignment at H-elongata_contig55399:454..3658+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig55399:454..3658+ >mRNA_H-elongata_contig55399.12955.1 ID=mRNA_H-elongata_contig55399.12955.1|Name=mRNA_H-elongata_contig55399.12955.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1284bp|location=Sequence derived from alignment at H-elongata_contig55399:454..3658+ (Himanthalia elongata Himel1 dioecious)back to top |