mRNA_H-elongata_contig55399.12955.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55399.12955.1
Unique NamemRNA_H-elongata_contig55399.12955.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig55399.12955.1 vs. uniprot
Match: D8LME1_ECTSI (Similarities to vacuolar protein sorting-associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LME1_ECTSI)

HSP 1 Score: 376 bits (966), Expect = 2.430e-123
Identity = 189/220 (85.91%), Postives = 203/220 (92.27%), Query Frame = 1
Query:    1 QVKIYFALMHLHPLDVRVTYRSTPGSEVQDAEELTLSTIAQLDNARLCLNALQLEHAFGGRGVFAEVILKHYKMAFLTQASRGVHNVVGSFDFLGDPVGLLSNLSTGVKDFFYEPLEGLKPDGKGFLYGLGKGGTSLVSNTMQGTFNTFNKVTGSLGDTISHLSLDTDYRKMRVRERLVQGETMADSMAQGAKEFGRGVFQGVTGVIMQVQLSPQLHGSL 660
            +VKIYFALMHLHPLDVR+TYR TPGS+VQDAEELTLST+AQL++ARLCLNALQLEHAFGGR VFAEV+LKHYK AFL+Q    VH VVGSFDFLGDPVGLLSNLSTGVKDFFYEP+EGLKPDGKGFLYGLGKGGTSLVSNTMQGTFNTFNKVTGSLGDTIS LSLDTDYRK RVRERLV+GETMADSMAQGAKEFGRG+FQGVTGV+M+  L  +  G L
Sbjct:  145 EVKIYFALMHLHPLDVRITYRGTPGSDVQDAEELTLSTMAQLNDARLCLNALQLEHAFGGRAVFAEVMLKHYKFAFLSQ----VHKVVGSFDFLGDPVGLLSNLSTGVKDFFYEPIEGLKPDGKGFLYGLGKGGTSLVSNTMQGTFNTFNKVTGSLGDTISQLSLDTDYRKRRVRERLVEGETMADSMAQGAKEFGRGIFQGVTGVVMEPYLGAEKEGVL 360          
BLAST of mRNA_H-elongata_contig55399.12955.1 vs. uniprot
Match: A0A6H5K0E6_9PHAE (PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0E6_9PHAE)

HSP 1 Score: 373 bits (957), Expect = 1.010e-115
Identity = 188/220 (85.45%), Postives = 202/220 (91.82%), Query Frame = 1
Query:    1 QVKIYFALMHLHPLDVRVTYRSTPGSEVQDAEELTLSTIAQLDNARLCLNALQLEHAFGGRGVFAEVILKHYKMAFLTQASRGVHNVVGSFDFLGDPVGLLSNLSTGVKDFFYEPLEGLKPDGKGFLYGLGKGGTSLVSNTMQGTFNTFNKVTGSLGDTISHLSLDTDYRKMRVRERLVQGETMADSMAQGAKEFGRGVFQGVTGVIMQVQLSPQLHGSL 660
            +VKIYFALMHLHPLDVR+TYR TPGS+VQDAEELTLST+AQL++ARLCLNALQLEHAFGGR VFAEV+LKHYK AFL+Q    VH VVGSFDFLGDPVGLLSNLSTGVKDFFYEP+EGLKPDGKGFLYGLGKGGTSLVSNTMQGTFNTFNKVTGSLGDTIS LSLDT YRK RVRERLV+GETMADSMAQGAKEFGRG+FQGVTGV+M+  L  +  G L
Sbjct: 2187 EVKIYFALMHLHPLDVRITYRGTPGSDVQDAEELTLSTMAQLNDARLCLNALQLEHAFGGRAVFAEVMLKHYKFAFLSQ----VHKVVGSFDFLGDPVGLLSNLSTGVKDFFYEPIEGLKPDGKGFLYGLGKGGTSLVSNTMQGTFNTFNKVTGSLGDTISQLSLDTGYRKRRVRERLVEGETMADSMAQGAKEFGRGIFQGVTGVVMEPYLGAEKGGVL 2402          
BLAST of mRNA_H-elongata_contig55399.12955.1 vs. uniprot
Match: A0A835ZA73_9STRA (PH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA73_9STRA)

HSP 1 Score: 224 bits (571), Expect = 7.440e-64
Identity = 124/218 (56.88%), Postives = 150/218 (68.81%), Query Frame = 1
Query:    1 QVKIYFALMHLHPLDVRVTYRSTPGSEV-----------QDAEEL-TLSTIAQLDNARLCLNALQLEHAFGGRGVFAEVILKHYKMAFLTQASRGVHNVVGSFDFLGDPVGLLSNLSTGVKDFFYEPLEGLKPDGKGFLYGLGKGGTSLVSNTMQGTFNTFNKVTGSLGDTISHLSLDTDYRKMRVRERLVQGETMADSMAQGAKEFGRGVFQGVTGV 618
            Q K+Y ALM LHP+D+R+TY+S PG E            + A EL  +ST+A+L+ A LCLNALQLEH FGGRG    ++L+HYKMA L Q       VVGSF FLGDPV L+SN+STGVKD FYEPLEGLKPDG GFL GLG+GG SLVSNT+ GTFNTF+KVTG++G+TI+ LSLD  Y++ R R R+             AK+FGR    GV GV
Sbjct: 2105 QPKVYVALMRLHPIDLRLTYKSLPGGEDGGAXXXXXREGEGAAELGAISTLAELEGASLCLNALQLEHTFGGRGQVLGLVLRHYKMALLRQLG----GVVGSFAFLGDPVRLMSNISTGVKDLFYEPLEGLKPDGGGFLQGLGRGGQSLVSNTLGGTFNTFDKVTGAMGNTIALLSLDAAYQRDRARARMAXXXXXXXXXTC-AKDFGRSSLDGVMGV 2317          
BLAST of mRNA_H-elongata_contig55399.12955.1 vs. uniprot
Match: A0A482SSP7_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SSP7_9ARCH)

HSP 1 Score: 169 bits (427), Expect = 1.620e-44
Identity = 82/207 (39.61%), Postives = 132/207 (63.77%), Query Frame = 1
Query:    4 VKIYFALMHLHPLDVRVTYRSTPGSEVQDAEELTLSTIAQLDNARLCLNALQLEHAFGGRGVFAEVILKHYKMAFLTQASRGVHNVVGSFDFLGDPVGLLSNLSTGVKDFFYEPLEGLKPDGKGFLYGLGKGGTSLVSNTMQGTFNTFNKVTGSLGDTISHLSLDTDYRKMRVRERLVQGETMADSMAQGAKEFGRGVFQGVTGVIM 624
            + +YF L+ LHPLDV + +R +P  ++ +AE   +S I+QLD ARLCLNAL  E+AFG   + +E+I+KHY+ +F  Q     H ++G+ D +   VGL++N+ TG  D FYEP++GL      FL GL KGG SL S  + GT    + +TG +G  +S L+LD+D+++ R   R  +  ++++ +  G +E G+ + +GVTG+++
Sbjct: 2636 LNLYFGLLQLHPLDVTLNFRPSPEVQISNAELAAMSIISQLDAARLCLNALIAENAFGSTTIISEIIIKHYRASFWRQ----FHKLIGATDIVEGSVGLVANIGTGFYDLFYEPIDGLLDSNSSFLNGLSKGGKSLASRAIGGTSAFTSTITGGIGKGVSLLTLDSDFQRNRSLRRFNKTTSVSEGLMVGTQELGKNIMEGVTGIVV 2838          
BLAST of mRNA_H-elongata_contig55399.12955.1 vs. uniprot
Match: A0A3R7JGP2_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JGP2_9STRA)

HSP 1 Score: 164 bits (414), Expect = 8.400e-43
Identity = 96/263 (36.50%), Postives = 141/263 (53.61%), Query Frame = 1
Query:    7 KIYFALMHLHPLDVRVTYRS------------------------TPGSEVQ-----------------DAEELTLSTIAQ----LDNARLCLNALQLEHAFGGRGVFAEVILKHYKMAFLTQASRGVHNVVGSFDFLGDPVGLLSNLSTGVKDFFYEPLEGLKPDGKGFLYGLGKGGTSLVSNTMQGTFNTFNKVTGSLGDTISHLSLDTDYRKMRVRERLVQGETMADSMAQGAKEFGRGVFQGVTGVIMQVQLSPQLHGSL 660
            K+YFAL+H+HP+D  +T+RS                        T G E++                  A   T+ ++      LDNA + LNAL +EHAFG        + K+Y      Q  + +H ++GSFDFLG+PVG L ++ TGV+DF YEPLEGLK  GKGF  GL KG  SL++NT+ GTF+  +K++G+ G   ++LSLD  Y+  R R R      + + + QG+KE   GV++GVTG+++      Q  G++
Sbjct:  663 KVYFALLHIHPMDFDITFRSDVFQTTTTISLHEAASFKKSKISTTHGDEMKRSSSAPSAFGEGGGDDSSAMSWTIPSLTMHVPDLDNAPVRLNALMIEHAFGTSSDLTRRVSKYYTR----QLWKQLHKILGSFDFLGNPVGFLDHIGTGVRDFVYEPLEGLKIGGKGFSKGLAKGTASLMTNTVDGTFDAASKISGTFGQGFANLSLDDHYQHNRARARRRHVRGLREGLVQGSKELSLGVYEGVTGLVLNPMRGAQESGAV 921          
BLAST of mRNA_H-elongata_contig55399.12955.1 vs. uniprot
Match: H3HCA5_PHYRM (Mannosyltransferase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HCA5_PHYRM)

HSP 1 Score: 164 bits (414), Expect = 8.630e-43
Identity = 95/263 (36.12%), Postives = 139/263 (52.85%), Query Frame = 1
Query:    7 KIYFALMHLHPLDVRVTYRS----------------------------------TPGSEVQDAEELTLST-----------IAQLDNARLCLNALQLEHAFGGRGVFAEVILKHYKMAFLTQASRGVHNVVGSFDFLGDPVGLLSNLSTGVKDFFYEPLEGLKPDGKGFLYGLGKGGTSLVSNTMQGTFNTFNKVTGSLGDTISHLSLDTDYRKMRVRERLVQGETMADSMAQGAKEFGRGVFQGVTGVIMQVQLSPQLHGSL 660
            K+YFAL+H+HP+D  +T+RS                                   P S  +   E + S            +  LDNA + LNAL +EHAFG  G     + K+Y      Q  + +H ++GSFDFLG+PVG L ++ TGV+DF YEPLEGLK  GKGF  GL KG  SL++NT+ GTF+  +K++G+ G   ++LSLD  Y++ R R R      + + + QG+KE   GV++GV G+++      Q  G++
Sbjct:  778 KVYFALLHIHPMDFDITFRSDVFQTTTTISLHEAASFKKSKITGNHDEMKRSSSAPSSFGEAGSEDSSSAMTWAIPSLTMHVPDLDNAPVRLNALMIEHAFGTSGDLTRRVSKYYTR----QLWKQLHKILGSFDFLGNPVGFLDHIGTGVRDFVYEPLEGLKIGGKGFSKGLAKGTASLMTNTVDGTFDAASKISGTFGQGFANLSLDDHYQQNRARARRRHVRGLREGLVQGSKELSLGVYEGVAGLVLNPMRGAQESGAV 1036          
BLAST of mRNA_H-elongata_contig55399.12955.1 vs. uniprot
Match: A0A3F2RL93_9STRA (Mannosyltransferase n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RL93_9STRA)

HSP 1 Score: 164 bits (414), Expect = 8.640e-43
Identity = 96/263 (36.50%), Postives = 141/263 (53.61%), Query Frame = 1
Query:    7 KIYFALMHLHPLDVRVTYRS------------------------TPGSEVQ-----------------DAEELTLSTIAQ----LDNARLCLNALQLEHAFGGRGVFAEVILKHYKMAFLTQASRGVHNVVGSFDFLGDPVGLLSNLSTGVKDFFYEPLEGLKPDGKGFLYGLGKGGTSLVSNTMQGTFNTFNKVTGSLGDTISHLSLDTDYRKMRVRERLVQGETMADSMAQGAKEFGRGVFQGVTGVIMQVQLSPQLHGSL 660
            K+YFAL+H+HP+D  +T+RS                        T G E++                  A   T+ ++      LDNA + LNAL +EHAFG        + K+Y      Q  + +H ++GSFDFLG+PVG L ++ TGV+DF YEPLEGLK  GKGF  GL KG  SL++NT+ GTF+  +K++G+ G   ++LSLD  Y+  R R R      + + + QG+KE   GV++GVTG+++      Q  G++
Sbjct:  756 KVYFALLHIHPMDFDITFRSDVFQTTTTISLHEAASFKKSKISTTHGDEMKRSSSAPSAFGEGGGDDSSAMSWTIPSLTMHVPDLDNAPVRLNALMIEHAFGTSSDLTRRVSKYYTR----QLWKQLHKILGSFDFLGNPVGFLDHIGTGVRDFVYEPLEGLKIGGKGFSKGLAKGTASLMTNTVDGTFDAASKISGTFGQGFANLSLDDHYQHNRARARRRHVRGLREGLVQGSKELSLGVYEGVTGLVLNPMRGAQESGAV 1014          
BLAST of mRNA_H-elongata_contig55399.12955.1 vs. uniprot
Match: A0A6A3U5U2_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3U5U2_9STRA)

HSP 1 Score: 164 bits (414), Expect = 9.020e-43
Identity = 94/264 (35.61%), Postives = 139/264 (52.65%), Query Frame = 1
Query:    7 KIYFALMHLHPLDVRVTYRS------------------------------------------TPGSEVQDAEELTLSTIAQ----LDNARLCLNALQLEHAFGGRGVFAEVILKHYKMAFLTQASRGVHNVVGSFDFLGDPVGLLSNLSTGVKDFFYEPLEGLKPDGKGFLYGLGKGGTSLVSNTMQGTFNTFNKVTGSLGDTISHLSLDTDYRKMRVRERLVQGETMADSMAQGAKEFGRGVFQGVTGVIMQVQLSPQLHGSL 660
            K+YFAL+H+HP+D  +T+RS                                          T G E   A    + ++      LDNA + LNAL +EHAFG  G     + K+Y      Q  + +H ++GSFDFLG+PVG L ++ TGV+DF YEPLEGLK  GKGF  GL KG  SL++NT+ GTF+  +K++G+ G   ++LSLD  Y++ R R R      + + + QG++E   GV++GV G+++      Q  G++
Sbjct: 3245 KVYFALLHIHPMDFDITFRSDVFQTSTTISLHEAASFKKMKMAGGHADELKRSSSAPFSFGETSGDESSSAMTWAIPSLTMHVPDLDNAPVRLNALMIEHAFGTSGDLTRRVSKYYTR----QLWKQLHKILGSFDFLGNPVGFLDHIGTGVRDFVYEPLEGLKIGGKGFSKGLAKGTASLMTNTVDGTFDAASKISGTFGQGFANLSLDDHYQQHRARARRRHVRGVREGLVQGSRELSLGVYEGVAGLVLNPMRGAQESGAV 3504          
BLAST of mRNA_H-elongata_contig55399.12955.1 vs. uniprot
Match: W2Q5C4_PHYPN (Uncharacterized protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2Q5C4_PHYPN)

HSP 1 Score: 160 bits (404), Expect = 1.990e-41
Identity = 93/260 (35.77%), Postives = 139/260 (53.46%), Query Frame = 1
Query:    7 KIYFALMHLHPLDVRVTYRS--------------------------------TPGS----EVQDAEELTLST------IAQLDNARLCLNALQLEHAFGGRGVFAEVILKHYKMAFLTQASRGVHNVVGSFDFLGDPVGLLSNLSTGVKDFFYEPLEGLKPDGKGFLYGLGKGGTSLVSNTMQGTFNTFNKVTGSLGDTISHLSLDTDYRKMRVRERLVQGETMADSMAQGAKEFGRGVFQGVTGVIMQVQLSPQLHGSL 660
            K+YFAL+H+HP+D  +T+RS                                 P S      +D+  +T +       +  LDNA + LNAL +EHAFG  G     + K+Y      Q  + +H ++GSFDFLG+PVG L ++ TGV+DF YEPLEGLK  GKGF  GL     SL+SNT+ GTF+  +K++G+ G   ++LSLD  Y++ R R R      + + + QG++E   GV++GV G+++      Q  G++
Sbjct: 3860 KVYFALLHIHPMDFDITFRSDVFQTSTTISLHEAASFKKASSHADEMKRSSSAPSSFGDSSGEDSSSVTWAIPSLTMHVPDLDNAPVRLNALMIEHAFGTSGDLTRRVSKYYTR----QLWKQLHKILGSFDFLGNPVGFLDHIGTGVRDFVYEPLEGLKIGGKGFSKGLXXXTASLMSNTVDGTFDAASKISGTFGQGFANLSLDDHYQQNRARARRRHVRGLREGLVQGSRELSLGVYEGVAGLVLNPMRGAQESGAV 4115          
BLAST of mRNA_H-elongata_contig55399.12955.1 vs. uniprot
Match: V9EYS4_PHYPR (Uncharacterized protein n=6 Tax=Phytophthora parasitica TaxID=4792 RepID=V9EYS4_PHYPR)

HSP 1 Score: 160 bits (404), Expect = 1.990e-41
Identity = 93/260 (35.77%), Postives = 139/260 (53.46%), Query Frame = 1
Query:    7 KIYFALMHLHPLDVRVTYRS--------------------------------TPGS----EVQDAEELTLST------IAQLDNARLCLNALQLEHAFGGRGVFAEVILKHYKMAFLTQASRGVHNVVGSFDFLGDPVGLLSNLSTGVKDFFYEPLEGLKPDGKGFLYGLGKGGTSLVSNTMQGTFNTFNKVTGSLGDTISHLSLDTDYRKMRVRERLVQGETMADSMAQGAKEFGRGVFQGVTGVIMQVQLSPQLHGSL 660
            K+YFAL+H+HP+D  +T+RS                                 P S      +D+  +T +       +  LDNA + LNAL +EHAFG  G     + K+Y      Q  + +H ++GSFDFLG+PVG L ++ TGV+DF YEPLEGLK  GKGF  GL     SL+SNT+ GTF+  +K++G+ G   ++LSLD  Y++ R R R      + + + QG++E   GV++GV G+++      Q  G++
Sbjct: 3860 KVYFALLHIHPMDFDITFRSDVFQTSTTISLHEAASFKKASSHADEMKRSSSAPSSFGDSSGEDSSSVTWAIPSLTMHVPDLDNAPVRLNALMIEHAFGTSGDLTRRVSKYYTR----QLWKQLHKILGSFDFLGNPVGFLDHIGTGVRDFVYEPLEGLKIGGKGFSKGLXXXTASLMSNTVDGTFDAASKISGTFGQGFANLSLDDHYQQNRARARRRHVRGLREGLVQGSRELSLGVYEGVAGLVLNPMRGAQESGAV 4115          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55399.12955.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LME1_ECTSI2.430e-12385.91Similarities to vacuolar protein sorting-associate... [more]
A0A6H5K0E6_9PHAE1.010e-11585.45PH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A835ZA73_9STRA7.440e-6456.88PH domain-containing protein n=1 Tax=Tribonema min... [more]
A0A482SSP7_9ARCH1.620e-4439.61Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A3R7JGP2_9STRA8.400e-4336.50Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
H3HCA5_PHYRM8.630e-4336.12Mannosyltransferase n=1 Tax=Phytophthora ramorum T... [more]
A0A3F2RL93_9STRA8.640e-4336.50Mannosyltransferase n=1 Tax=Phytophthora kernoviae... [more]
A0A6A3U5U2_9STRA9.020e-4335.61Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
W2Q5C4_PHYPN1.990e-4135.77Uncharacterized protein n=1 Tax=Phytophthora paras... [more]
V9EYS4_PHYPR1.990e-4135.77Uncharacterized protein n=6 Tax=Phytophthora paras... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55399contigH-elongata_contig55399:454..3658 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score365.9
Seed ortholog evalue1.3e-98
Seed eggNOG ortholog2880.D8LME1
EggNOG free text desc.regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
EggNOG OGsCOG5043@1,KOG1809@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionsimilarities to vacuolar protein sorting-associated protein
Ec32 orthologEc-05_002440.1
Exons5
Model size666
Cds size642
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55399.12955.1prot_H-elongata_contig55399.12955.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55399 478..3658 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930903.071936-UTR-H-elongata_contig55399:453..4771622930903.071936-UTR-H-elongata_contig55399:453..477Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig55399 454..477 +
1691679618.2021668-UTR-H-elongata_contig55399:453..4771691679618.2021668-UTR-H-elongata_contig55399:453..477Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig55399 454..477 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930903.0914614-CDS-H-elongata_contig55399:477..5901622930903.0914614-CDS-H-elongata_contig55399:477..590Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55399 478..590 +
1691679618.2158475-CDS-H-elongata_contig55399:477..5901691679618.2158475-CDS-H-elongata_contig55399:477..590Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55399 478..590 +
1622930903.1087618-CDS-H-elongata_contig55399:1341..14531622930903.1087618-CDS-H-elongata_contig55399:1341..1453Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55399 1342..1453 +
1691679618.223823-CDS-H-elongata_contig55399:1341..14531691679618.223823-CDS-H-elongata_contig55399:1341..1453Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55399 1342..1453 +
1622930903.1248877-CDS-H-elongata_contig55399:1702..18821622930903.1248877-CDS-H-elongata_contig55399:1702..1882Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55399 1703..1882 +
1691679618.2331195-CDS-H-elongata_contig55399:1702..18821691679618.2331195-CDS-H-elongata_contig55399:1702..1882Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55399 1703..1882 +
1622930903.142207-CDS-H-elongata_contig55399:2722..28331622930903.142207-CDS-H-elongata_contig55399:2722..2833Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55399 2723..2833 +
1691679618.2426312-CDS-H-elongata_contig55399:2722..28331691679618.2426312-CDS-H-elongata_contig55399:2722..2833Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55399 2723..2833 +
1622930903.1588304-CDS-H-elongata_contig55399:3532..36581622930903.1588304-CDS-H-elongata_contig55399:3532..3658Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55399 3533..3658 +
1691679618.252067-CDS-H-elongata_contig55399:3532..36581691679618.252067-CDS-H-elongata_contig55399:3532..3658Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55399 3533..3658 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55399.12955.1

>prot_H-elongata_contig55399.12955.1 ID=prot_H-elongata_contig55399.12955.1|Name=mRNA_H-elongata_contig55399.12955.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=214bp
MHLHPLDVRVTYRSTPGSEVQDAEELTLSTIAQLDNARLCLNALQLEHAF
GGRGVFAEVILKHYKMAFLTQASRGVHNVVGSFDFLGDPVGLLSNLSTGV
KDFFYEPLEGLKPDGKGFLYGLGKGGTSLVSNTMQGTFNTFNKVTGSLGD
TISHLSLDTDYRKMRVRERLVQGETMADSMAQGAKEFGRGVFQGVTGVIM
QVQLSPQLHGSLS*
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mRNA from alignment at H-elongata_contig55399:454..3658+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55399.12955.1 ID=mRNA_H-elongata_contig55399.12955.1|Name=mRNA_H-elongata_contig55399.12955.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3205bp|location=Sequence derived from alignment at H-elongata_contig55399:454..3658+ (Himanthalia elongata Himel1 dioecious)
CAGGTCAAGATATACTTTGCGCTCATGCACCTGCATCCGCTGGACGTCCG CGTCACGTATCGGTCGACTCCCGGCTCAGAGGTCCAAGACGCCGAGGAGC TGACCCTCTCGACCATCGCTCAGCTCGACAACGCCAGGTCGGCAAAGGCC CTTGTACCGTTTGCTTTATACTAGAATAGAGATAAAACATAGTCTAGAAT ATAAATATATATAGATATATGTATAGATATGTGTATATATACATATTAGT ATAGAACGGAAAGGACCCAGTGGCGGTGTTATTAGTATTTTTTAATTAGT AGTAGTGTATACTATTTTGGAAACGTTGAGAAGGTCGTCGTTAAATTCCA CGGTGGATATATAAGCGAGTCGATTTGACCACGCGAGAGCATGCCGTGGA TCCAAGGCGTGTGGCGTCCTCGATGACGTCGGGCGACAGACATCTAACCC CTCACGTTCTTTATCAACATTTATTCTGTGTTTTTTTTTGCCTATCCTGA AGTATACATTTTGTTTTTTACCTGGTTTTGGTCACTTTTTTGTATTGTTA GTAGTATTTTAGCCACTTTTTCACGTAAGCCCTTCCCCCGGGTGATGCGC GCAGGAGGCGTTGCGAAGAGCAGGCAAATAAAATTCTGGTTGGATTCGGT TCTATATCATTTTCCACGGGACGCCTAAAAAACGCATGGTGTCTTGTCAG CTTGTTGTTGAGGGGATGGAATGAAACGCCCTAATAATAGTACTACTGTT TAGACATTCCGATTGTTGCGACGACGATTGCGATTGTTTGTCGCTCAAAG CACCCCCCCCAACCCCACCCCTCACCCCCGAGGAAACAATGCCGACCTAC CCGCTTGTGTATGTGTCTGTTTATGTTCTCTCCGCCAGGCTGTGCCTCAA CGCGTTGCAGCTGGAGCACGCCTTCGGTGGCCGTGGTGTCTTCGCAGAGG TTATCCTAAAGCACTACAAGATGGCGTTCCTGACCCAGGCGAGTCGCGGG GTCAGGGGTCACACGCCCTTTTCGCCTAAAGAACGGCAAGACAAGCAGCC TCGTGTCTCTTATCATTAGGGAGTGTCGGTGCTCGGGGTGGACTAGCGAG GGTCTTCAAGCCGTGGTCGTGTTTCGTAGTCCTCTACTGTATATCTGTCT GTCTCTTTCATCTCATGGAAGACATTTTTTCTCCCAGCCCCCCCATCTTC CCTTGCCCTTGTCCTTGCCTTGCGTTGCCCTGTCCTGCCTCCGTCACAGG TGCACAATGTCGTGGGCAGCTTCGACTTCCTGGGAGATCCTGTAGGACTG CTATCGAACCTCTCCACCGGCGTGAAGGATTTCTTTTACGAGCCCTTGGA GGGTCTCAAGCCGGACGGGAAGGGGTTCTTGTACGGCCTGGGGAAAGGGG GCACCTCGCTCGTGTCCAACACAATGCAGGTGGGTCGGTGGGTGGGTGGG TGTTTGACCGGCGCTGAGAGCGAACTCGCAACCCCCCCCCAAAAAACAAT AAAATAACATAAAAAATCCTAGTGTATCGCTCTCGAAGGATTATTTCCGC AGAGCTCATTTTTTTCTATTTTGTTTTTCTTCTCATTTAAGTTAAGTCCA ATGGCTCAAAACCTATTTCTGCAGAGCACATTTTTATGGTTGTTTTGTTA TTGTTTTTGTTGTTTTTTCCCCTCAACATTTTGAGTTATGATAGGCTCCC TATCGTTTTGAAGAATTTTCTTAACTCCTCAATCTGTTTTTTTACATACT AAATGTATAACAAAACTTGAAATCCAGTTCCAAAAGGGTTAAGAGCACTT GATTTTCCTTTCTTTTTTTCAAACACACAAGTTTATATAGCCTAAAAGAC CCGGTTAGACAGGAAAATGTTAATCTATTTTGTAGGAGTAGTATGTAATG CCTCCTGGCGTTGTAATACCTCCTTAAAATATAACGAGCGTTCACGCTTA AAATAAGCTTGACGGAAGTCATCGTCTCGAACAGGCACAGACCATATATA TGTATATATGTAAATAGAGAGAGCTCAAGCGTGTTGGGAGAGGGTCGTTC GCGGAGATATAGCCGAATGCTACACCATCAGTCTCCCCCTCCCCCTATCA CCCTCCTCAGACCTTTAGCGCGAATCAATCAAATCGGACACGCACCAGCG GCGCCGACACCAGGATTATTTTCCTCTTACCGAAACCGCGAGGGCGTGTG CTGAACTCGTTTGTGCCTCTCCGCTACTGCTGCTGCTGCTGCTGACTCCA TCGTTTTCATATATCCAAGGGAACCTTCAACACGTTCAACAAGGTTACGG GCTCGCTCGGAGATACGATCTCCCATCTCTCTCTCGACACCGACTACCGC AAGATGAGGGTACGAGAGCGCCTCGTGCAGGTAAGAAAGAGGAGGCTTTT CGGGAGTTATTAATATTTGAGAGGGGAAATATGGTGGGAGAGGGGGGATA GAGACGGAGGATGGGGGGAAGTCCCTACGTTAGCATTCATCACATCACGG GTCATCGCCTTAATATATACTCGATATGCTGGTCTCTCTAGAAAACCGCT CGCTCCTTTTTCATGATTTATTCCGTATAATGTACCAGTAGTCTTTTGAT GTATTTCCAGCTCAACACCCCCCCTCCCCCCCCTCCCCACCCCACCCCAA CCTCGCCGTCTTCTTTATGTTATGTTATGTTATTTATTTTTCTCTCGATT CCCCCGAAAAATTCCTTGTGCTCTGTCGCACCCCCATGTATGTATGTATG TATATATATATATATATATATGGTCATTACATATAGCAAGATCAACCGGA TTTGGTTGCCTTCTGCTCGTGATCAGCTGAACAGGGAAAATATGTTTCCC CTGTCCCCGTTCGCGCGTGAGAATTTGGTCTCGCGAGACGGGTTCAGCAT TCCCGTCCCGCGTCAGTAAAGCTTTTTGAGGGAGTTATGAAGATTTTTTT AAAGGGAATATTATGTCTATAGAGTAAAGCTATACGTAATAACATAATAC AGTGCATAATAATAGCCGTCTCAAGTGATCCTTTCCTCCCCGTCTCCCCC TTTTCCCCCGCCCCTTTTTGATGTGAAAGGGAGAGACCATGGCGGACAGC ATGGCGCAGGGTGCTAAGGAGTTCGGACGGGGTGTTTTCCAGGGGGTCAC TGGCGTCATCATGCAGGTGCAGCTTTCTCCCCAGCTTCACGGCTCGTTAT CATAA
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Coding sequence (CDS) from alignment at H-elongata_contig55399:454..3658+

>mRNA_H-elongata_contig55399.12955.1 ID=mRNA_H-elongata_contig55399.12955.1|Name=mRNA_H-elongata_contig55399.12955.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1284bp|location=Sequence derived from alignment at H-elongata_contig55399:454..3658+ (Himanthalia elongata Himel1 dioecious)
ATGCACCTGCATCCGCTGGACGTCCGCGTCACGTATCGGTCGACTCCCGG
CTCAGAGGTCCAAGACGCCGAGGAGCTGACCCTCTCGACCATCGCTCAGC
TCGACAACGCCAGATGCACCTGCATCCGCTGGACGTCCGCGTCACGTATC
GGTCGACTCCCGGCTCAGAGGTCCAAGACGCCGAGGAGCTGACCCTCTCG
ACCATCGCTCAGCTCGACAACGCCAGGCTGTGCCTCAACGCGTTGCAGCT
GGAGCACGCCTTCGGTGGCCGTGGTGTCTTCGCAGAGGTTATCCTAAAGC
ACTACAAGATGGCGTTCCTGACCCAGGCGAGTCGCGGGGCTGTGCCTCAA
CGCGTTGCAGCTGGAGCACGCCTTCGGTGGCCGTGGTGTCTTCGCAGAGG
TTATCCTAAAGCACTACAAGATGGCGTTCCTGACCCAGGCGAGTCGCGGG
GTGCACAATGTCGTGGGCAGCTTCGACTTCCTGGGAGATCCTGTAGGACT
GCTATCGAACCTCTCCACCGGCGTGAAGGATTTCTTTTACGAGCCCTTGG
AGGGTCTCAAGCCGGACGGGAAGGGGTTCTTGTACGGCCTGGGGAAAGGG
GGCACCTCGCTCGTGTCCAACACAATGCAGGTGCACAATGTCGTGGGCAG
CTTCGACTTCCTGGGAGATCCTGTAGGACTGCTATCGAACCTCTCCACCG
GCGTGAAGGATTTCTTTTACGAGCCCTTGGAGGGTCTCAAGCCGGACGGG
AAGGGGTTCTTGTACGGCCTGGGGAAAGGGGGCACCTCGCTCGTGTCCAA
CACAATGCAGGGAACCTTCAACACGTTCAACAAGGTTACGGGCTCGCTCG
GAGATACGATCTCCCATCTCTCTCTCGACACCGACTACCGCAAGATGAGG
GTACGAGAGCGCCTCGTGCAGGGAACCTTCAACACGTTCAACAAGGTTAC
GGGCTCGCTCGGAGATACGATCTCCCATCTCTCTCTCGACACCGACTACC
GCAAGATGAGGGTACGAGAGCGCCTCGTGCAGGGAGAGACCATGGCGGAC
AGCATGGCGCAGGGTGCTAAGGAGTTCGGACGGGGTGTTTTCCAGGGGGT
CACTGGCGTCATCATGCAGGTGCAGCTTTCTCCCCAGCTTCACGGCTCGT
TATCATAAGGAGAGACCATGGCGGACAGCATGGCGCAGGGTGCTAAGGAG
TTCGGACGGGGTGTTTTCCAGGGGGTCACTGGCGTCATCATGCAGGTGCA
GCTTTCTCCCCAGCTTCACGGCTCGTTATCATAA
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