mRNA_H-elongata_contig51511.12414.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig51511.12414.1 vs. uniprot
Match: D7FJE9_ECTSI (PTIF2, plastid translation intiation factor 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJE9_ECTSI) HSP 1 Score: 298 bits (764), Expect = 2.540e-92 Identity = 146/179 (81.56%), Postives = 165/179 (92.18%), Query Frame = 1
Query: 1 SEMISEDEYFRARCKILPSGVGAITKSDVAIAAVSNAFVVGFNVGADQEASREARAIGIDIGYYSVVYNVMDDIKKRLDELVSPTPDGVYTGRAIVKMIFNIGKVGNIAGSTVEDGVVNKGASVLLKRRGRIIHEGTLKTLKNVKADVQQMVAGTECGIQVEGFEDFQEDDILECYALE 537
SEMISEDEYF+A+CK+LPSGVG ITKSDVAIA VSNAFVVGFNVGADQEA+REARA GIDIGYYSVVYNVMDDI+ +LDELVSPTPDG YTGRA+VK+IFNIGKVGNIAGS+VEDGV+NKG +VL+KR GRI+HEG LKTLKN+K D +MV GTECGIQVEGFEDFQE D++ECY ++
Sbjct: 839 SEMISEDEYFKAKCKLLPSGVGEITKSDVAIAGVSNAFVVGFNVGADQEATREARANGIDIGYYSVVYNVMDDIQAKLDELVSPTPDGEYTGRAVVKVIFNIGKVGNIAGSSVEDGVINKGGNVLVKRLGRIVHEGKLKTLKNLKVDADKMVMGTECGIQVEGFEDFQEGDLIECYKMD 1017
BLAST of mRNA_H-elongata_contig51511.12414.1 vs. uniprot
Match: A0A835ZAQ9_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAQ9_9STRA) HSP 1 Score: 236 bits (601), Expect = 8.560e-72 Identity = 115/178 (64.61%), Postives = 144/178 (80.90%), Query Frame = 1
Query: 4 EMISEDEYFRARCKILPSGVGAITKSDVAIAAVSNAFVVGFNVGADQEASREARAIGIDIGYYSVVYNVMDDIKKRLDELVSPTPDGVYTGRAIVKMIFNIGKVGNIAGSTVEDGVVNKGASVLLKRRGRIIHEGTLKTLKNVKADVQQMVAGTECGIQVEGFEDFQEDDILECYALE 537
E++SEDEYF+ CK+L +GVG +TKSD+AIA VSNA+VV FNV A+ +A +AR I+IGYY+VVY+V+D +++RLD + SPTPDGVY GRA VK+IF+IGKVGNIAGS V DG V +G++V + R GR++HEG LK LKNVKADV+ MVAGTECGIQV FEDFQE D +ECY E
Sbjct: 403 ELVSEDEYFKVTCKVLTAGVGEVTKSDIAIAGVSNAYVVCFNVAANHQAVEDARRGDIEIGYYNVVYDVLDQVQERLDRIRSPTPDGVYIGRAQVKVIFSIGKVGNIAGSEVLDGEVRRGSNVRIMRMGRVVHEGALKVLKNVKADVEAMVAGTECGIQVSDFEDFQEGDFIECYIDE 580
BLAST of mRNA_H-elongata_contig51511.12414.1 vs. uniprot
Match: A0A7S3Y8J2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8J2_HETAK) HSP 1 Score: 197 bits (501), Expect = 3.820e-56 Identity = 98/177 (55.37%), Postives = 131/177 (74.01%), Query Frame = 1
Query: 4 EMISEDEYFRARCKILPSGVGAITKSDVAIAAVSNAFVVGFNVGADQEASREARAIGIDIGYYSVVYNVMDDIKKRLDELVSPTPDGVYTGRAIVKMIFNIGKVGNIAGSTVEDGVVNKGASVLLKRRGRIIHEGTLKTLKNVKADVQQMVAGTECGIQVEGFEDFQEDDILECYAL 534
++ + DE K+L + G +TKSDVA+A+VS+A VV FNV A+ +A EAR GIDI Y S+VY+V+DD++ R+ E++SPTPDG Y G+A VK +F+IGKVG IAGS V DG V GA+V + R R+IHEG + TLKN+KAD +MVAGTECGI +E FEDF+E D++ECY +
Sbjct: 546 QLKARDEIGEVTVKVLAAAAGEVTKSDVALASVSDALVVAFNVAANFQAQEEARERGIDITYASIVYDVLDDLEARIQEVLSPTPDGEYAGKARVKQVFDIGKVGRIAGSEVLDGRVINGANVRVLRGPRVIHEGVMGTLKNLKADADEMVAGTECGIGLEAFEDFEEGDVIECYVV 722
BLAST of mRNA_H-elongata_contig51511.12414.1 vs. uniprot
Match: A0A7S2Y1F3_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1F3_9STRA) HSP 1 Score: 190 bits (483), Expect = 1.370e-53 Identity = 90/172 (52.33%), Postives = 131/172 (76.16%), Query Frame = 1
Query: 19 DEYFRARCKILPSGVGAITKSDVAIAAVSNAFVVGFNVGADQEASREARAIGIDIGYYSVVYNVMDDIKKRLDELVSPTPDGVYTGRAIVKMIFNIGKVGNIAGSTVEDGVVNKGASVLLKRRGRIIHEGTLKTLKNVKADVQQMVAGTECGIQVEGFEDFQEDDILECYAL 534
D++ K+L + G I + D+A+A+VSNA V+GFNV A+ +A +AR I++ Y +VVY ++D++++R+ E++SPTP+G Y G+A + +FNIGKVGNIAGS V DG V KG++V + R GR+IHE T+KTLKNVK DV++MVAGTECGIQ++GFE+F+ DI+E Y +
Sbjct: 547 DDFGEVTVKVLSATPGEINQGDIALASVSNALVIGFNVAANYQAQEDARKNEIEVMYATVVYEILDEMEERMQEVLSPTPEGEYIGKAEILQVFNIGKVGNIAGSNVLDGRVKKGSNVRVMRAGRVIHETTMKTLKNVKVDVEEMVAGTECGIQLQGFEEFEVGDIIESYIV 718
BLAST of mRNA_H-elongata_contig51511.12414.1 vs. uniprot
Match: A0A7S2SSV4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSV4_9STRA) HSP 1 Score: 181 bits (458), Expect = 7.740e-53 Identity = 86/177 (48.59%), Postives = 131/177 (74.01%), Query Frame = 1
Query: 4 EMISEDEYFRARCKILPSGVGAITKSDVAIAAVSNAFVVGFNVGADQEASREARAIGIDIGYYSVVYNVMDDIKKRLDELVSPTPDGVYTGRAIVKMIFNIGKVGNIAGSTVEDGVVNKGASVLLKRRGRIIHEGTLKTLKNVKADVQQMVAGTECGIQVEGFEDFQEDDILECYAL 534
E+++EDE + + K+L S VG +TKSDVAIA VS A+++ FNV A+ +A +AR G++IGYYS+VY+++++++ R+ E++SPTPDG G+A VKM+F+IGKVG IAG V DG + K +V + R RI++EG L TLK+VK DV ++ AG++CG+ E +E +E D++ECY +
Sbjct: 173 ELVAEDEITQVKVKVLQSSVGEVTKSDVAIAGVSKAWILAFNVAANFQAQEDAREKGLEIGYYSIVYDILEEMESRMQEVLSPTPDGELVGKAEVKMVFDIGKVGKIAGCGVVDGDILKAGNVRVLRGPRIVYEGQLTTLKHVKEDVTKISAGSDCGMAFEEWEGMEEGDVVECYKI 349
BLAST of mRNA_H-elongata_contig51511.12414.1 vs. uniprot
Match: W7T2T0_9STRA (Translation initiation factor if-2 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7T2T0_9STRA) HSP 1 Score: 182 bits (462), Expect = 1.050e-50 Identity = 83/174 (47.70%), Postives = 126/174 (72.41%), Query Frame = 1
Query: 16 EDEYFRARCKILPSGVGAITKSDVAIAAVSNAFVVGFNVGADQEASREARAIGIDIGYYSVVYNVMDDIKKRLDELVSPTPDGVYTGRAIVKMIFNIGKVGNIAGSTVEDGVVNKGASVLLKRRGRIIHEGTLKTLKNVKADVQQMVAGTECGIQVEGFEDFQEDDILECYALE 537
ED+ K+L SGVG +T++DVA+A VS A ++ FNV AD A EAR G++I Y++V+Y+++D ++ ++ E++SPTP+G Y G A VKM+F IGKVG +AG V DG + +G +V + R I+++G L+TL+NVK+DVQ+M AG ECG+ + +EDF+ DDI+ECY ++
Sbjct: 519 EDDRAEVGVKVLSSGVGDVTQNDVALAGVSQATILAFNVAADMNAQEEARKTGVEIEYHTVIYDILDKLEAKVQEILSPTPEGEYVGAARVKMVFEIGKVGKVAGCEVTDGTIKRGGTVRVLRGSEIVYKGPLRTLRNVKSDVQEMSAGQECGMSFKDYEDFRPDDIVECYVVD 692
BLAST of mRNA_H-elongata_contig51511.12414.1 vs. uniprot
Match: A0A7S2B294_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B294_9STRA) HSP 1 Score: 179 bits (455), Expect = 2.200e-49 Identity = 91/173 (52.60%), Postives = 126/173 (72.83%), Query Frame = 1
Query: 16 EDEYFRARCKILPSGVGAITKSDVAIAAVSNAFVVGFNVGADQEASREARAIGIDIGYYSVVYNVMDDIKKRLDELVSPTPDGVYTGRAIVKMIFNIGKVGNIAGSTVEDGVVNKGASVLLKRRGRIIHEGTLKTLKNVKADVQQMVAGTECGIQVEGFEDFQEDDILECYAL 534
++E R + K+L SGVG +T+SD+AIA VSNA+ + FNV +A +AR ++IGYYSVVY+V+D+++ R+ E++SPTP+G YTG+A VK IF+IGKVG IAG V DG V K A+ + R RI+HEG LKTLK+VK DVQ M AG+ECG+ + +E+ E DI+E Y +
Sbjct: 608 KNEIARVKVKVLLSGVGDVTQSDLAIADVSNAWTIAFNVATIYQAQEDARNKNLEIGYYSVVYDVLDEMEVRMKEVLSPTPEGDYTGKAEVKAIFDIGKVGKIAGCAVLDGEVLKSANFRVLRGPRIVHEGRLKTLKHVKEDVQSMSAGSECGVNFQDWEEMMEGDIIESYVM 780
BLAST of mRNA_H-elongata_contig51511.12414.1 vs. uniprot
Match: A0A7S2PSJ2_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PSJ2_9STRA) HSP 1 Score: 163 bits (412), Expect = 6.410e-46 Identity = 82/179 (45.81%), Postives = 123/179 (68.72%), Query Frame = 1
Query: 1 SEMISEDEYFRARCKILPSGVGAITKSDVAIAAVS-NAFVVGFNVGADQEASREARAIGIDIGYYSVVYNVMDDIKKRLDELVSPTPDGVYTGRAIVKMIFNIGKVGNIAGSTVEDGVVNKGASVLLKRRGRIIHEGTLKTLKNVKADVQQMVAGTECGIQVEGFEDFQEDDILECYAL 534
+E+ E+E K+L S G ITKSD+A+A+V+ + V+ FN GA+ A +ARA+G+ I YYSVVY+ ++ ++ R+ E++SPTP+G Y G AIV+ +FNIG GNIAGS DG++ KG++V + R +I+ E +KTL+N KA+V + G ECGI + +EDF+ DDI+E Y +
Sbjct: 172 TELRLENEEAEVGIKVLISEAGDITKSDIAVASVTPDTTVIAFNTGANAAAQDDARALGVPIEYYSVVYDAIESVECRMQEVLSPTPEGEYVGSAIVQEVFNIGGTGNIAGSKCRDGIIKKGSNVRVMRGDKILIESKVKTLRNFKAEVDAITTGDECGIGLLDYEDFEPDDIIESYVV 350
BLAST of mRNA_H-elongata_contig51511.12414.1 vs. uniprot
Match: A0A2M8CVQ4_9PROT (Translation initiation factor IF-2 n=1 Tax=Alphaproteobacteria bacterium CG_4_9_14_3_um_filter_47_13 TaxID=1973899 RepID=A0A2M8CVQ4_9PROT) HSP 1 Score: 167 bits (423), Expect = 7.930e-45 Identity = 84/173 (48.55%), Postives = 116/173 (67.05%), Query Frame = 1
Query: 16 EDEYFRARCKILPSGVGAITKSDVAIAAVSNAFVVGFNVGADQEASREARAIGIDIGYYSVVYNVMDDIKKRLDELVSPTPDGVYTGRAIVKMIFNIGKVGNIAGSTVEDGVVNKGASVLLKRRGRIIHEGTLKTLKNVKADVQQMVAGTECGIQVEGFEDFQEDDILECYAL 534
EDE K+L SG G IT+SDV +A S A ++GFNV A+ +A A GI+I YY+V+YN++DD+K L +++PT Y G+A++K +F I K+GNIAG V G V +GA V L R +IHEGTLKTLK K +V+++ GTECG+ EG+ED +E DI+ECY +
Sbjct: 655 EDENEDVTIKVLHSGAGGITESDVTLANASGAIIIGFNVRANTQARALAEHEGIEIRYYNVIYNIIDDVKNILSGMLAPTKREQYLGQALIKQVFKITKIGNIAGCVVSIGSVKRGAKVRLLREDVVIHEGTLKTLKRHKDEVKEVKEGTECGMAFEGYEDIKEGDIIECYEI 827
BLAST of mRNA_H-elongata_contig51511.12414.1 vs. uniprot
Match: A0A4Q3FK89_9HYPH (Translation initiation factor IF-2 (Fragment) n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A4Q3FK89_9HYPH) HSP 1 Score: 156 bits (394), Expect = 3.800e-44 Identity = 76/167 (45.51%), Postives = 110/167 (65.87%), Query Frame = 1
Query: 37 RCKILPSGVGAITKSDVAIAAVSNAFVVGFNVGADQEASREARAIGIDIGYYSVVYNVMDDIKKRLDELVSPTPDGVYTGRAIVKMIFNIGKVGNIAGSTVEDGVVNKGASVLLKRRGRIIHEGTLKTLKNVKADVQQMVAGTECGIQVEGFEDFQEDDILECYALE 537
R ++L SGVGAIT+SDV +A S A V+GFNV A +EA A G++I YY+++YN+MDD+K + L++PT G A + IF++ KVG IAG V DG + +GA+V L R ++HEG L LK K D +++VAG ECG+ E ++D + D++ECY +E
Sbjct: 97 RARVLSSGVGAITESDVTLAQASGAVVLGFNVRAHKEAREAADRAGVEIRYYNIIYNLMDDVKDAMSGLLAPTLRETMLGNATILEIFSVSKVGKIAGCRVTDGTIERGANVRLIRDNVVVHEGKLSQLKRFKDDAKEVVAGQECGMSFENYQDMRAGDVIECYRVE 263 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51511.12414.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig51511.12414.1 >prot_H-elongata_contig51511.12414.1 ID=prot_H-elongata_contig51511.12414.1|Name=mRNA_H-elongata_contig51511.12414.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=178bp MISEDEYFRARCKILPSGVGAITKSDVAIAAVSNAFVVGFNVGADQEASRback to top mRNA from alignment at H-elongata_contig51511:719..3080+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig51511.12414.1 ID=mRNA_H-elongata_contig51511.12414.1|Name=mRNA_H-elongata_contig51511.12414.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2362bp|location=Sequence derived from alignment at H-elongata_contig51511:719..3080+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig51511:719..3080+ >mRNA_H-elongata_contig51511.12414.1 ID=mRNA_H-elongata_contig51511.12414.1|Name=mRNA_H-elongata_contig51511.12414.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1068bp|location=Sequence derived from alignment at H-elongata_contig51511:719..3080+ (Himanthalia elongata Himel1 dioecious)back to top |