prot_H-elongata_contig51511.12414.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig51511.12414.1
Unique Nameprot_H-elongata_contig51511.12414.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length178
Homology
BLAST of mRNA_H-elongata_contig51511.12414.1 vs. uniprot
Match: D7FJE9_ECTSI (PTIF2, plastid translation intiation factor 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJE9_ECTSI)

HSP 1 Score: 295 bits (755), Expect = 4.660e-91
Identity = 144/177 (81.36%), Postives = 163/177 (92.09%), Query Frame = 0
Query:    1 MISEDEYFRARCKILPSGVGAITKSDVAIAAVSNAFVVGFNVGADQEASREARAIGIDIGYYSVVYNVMDDIKKRLDELVSPTPDGVYTGRAIVKMIFNIGKVGNIAGSTVEDGVVNKGASVLLKRRGRIIHEGTLKTLKNVKADVQQMVAGTECGIQVEGFEDFQEDDILECYALE 177
            MISEDEYF+A+CK+LPSGVG ITKSDVAIA VSNAFVVGFNVGADQEA+REARA GIDIGYYSVVYNVMDDI+ +LDELVSPTPDG YTGRA+VK+IFNIGKVGNIAGS+VEDGV+NKG +VL+KR GRI+HEG LKTLKN+K D  +MV GTECGIQVEGFEDFQE D++ECY ++
Sbjct:  841 MISEDEYFKAKCKLLPSGVGEITKSDVAIAGVSNAFVVGFNVGADQEATREARANGIDIGYYSVVYNVMDDIQAKLDELVSPTPDGEYTGRAVVKVIFNIGKVGNIAGSSVEDGVINKGGNVLVKRLGRIVHEGKLKTLKNLKVDADKMVMGTECGIQVEGFEDFQEGDLIECYKMD 1017          
BLAST of mRNA_H-elongata_contig51511.12414.1 vs. uniprot
Match: A0A835ZAQ9_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAQ9_9STRA)

HSP 1 Score: 234 bits (596), Expect = 4.360e-71
Identity = 114/177 (64.41%), Postives = 143/177 (80.79%), Query Frame = 0
Query:    1 MISEDEYFRARCKILPSGVGAITKSDVAIAAVSNAFVVGFNVGADQEASREARAIGIDIGYYSVVYNVMDDIKKRLDELVSPTPDGVYTGRAIVKMIFNIGKVGNIAGSTVEDGVVNKGASVLLKRRGRIIHEGTLKTLKNVKADVQQMVAGTECGIQVEGFEDFQEDDILECYALE 177
            ++SEDEYF+  CK+L +GVG +TKSD+AIA VSNA+VV FNV A+ +A  +AR   I+IGYY+VVY+V+D +++RLD + SPTPDGVY GRA VK+IF+IGKVGNIAGS V DG V +G++V + R GR++HEG LK LKNVKADV+ MVAGTECGIQV  FEDFQE D +ECY  E
Sbjct:  404 LVSEDEYFKVTCKVLTAGVGEVTKSDIAIAGVSNAYVVCFNVAANHQAVEDARRGDIEIGYYNVVYDVLDQVQERLDRIRSPTPDGVYIGRAQVKVIFSIGKVGNIAGSEVLDGEVRRGSNVRIMRMGRVVHEGALKVLKNVKADVEAMVAGTECGIQVSDFEDFQEGDFIECYIDE 580          
BLAST of mRNA_H-elongata_contig51511.12414.1 vs. uniprot
Match: A0A7S3Y8J2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8J2_HETAK)

HSP 1 Score: 197 bits (500), Expect = 4.920e-56
Identity = 98/174 (56.32%), Postives = 129/174 (74.14%), Query Frame = 0
Query:    3 SEDEYFRARCKILPSGVGAITKSDVAIAAVSNAFVVGFNVGADQEASREARAIGIDIGYYSVVYNVMDDIKKRLDELVSPTPDGVYTGRAIVKMIFNIGKVGNIAGSTVEDGVVNKGASVLLKRRGRIIHEGTLKTLKNVKADVQQMVAGTECGIQVEGFEDFQEDDILECYAL 176
            + DE      K+L +  G +TKSDVA+A+VS+A VV FNV A+ +A  EAR  GIDI Y S+VY+V+DD++ R+ E++SPTPDG Y G+A VK +F+IGKVG IAGS V DG V  GA+V + R  R+IHEG + TLKN+KAD  +MVAGTECGI +E FEDF+E D++ECY +
Sbjct:  549 ARDEIGEVTVKVLAAAAGEVTKSDVALASVSDALVVAFNVAANFQAQEEARERGIDITYASIVYDVLDDLEARIQEVLSPTPDGEYAGKARVKQVFDIGKVGRIAGSEVLDGRVINGANVRVLRGPRVIHEGVMGTLKNLKADADEMVAGTECGIGLEAFEDFEEGDVIECYVV 722          
BLAST of mRNA_H-elongata_contig51511.12414.1 vs. uniprot
Match: A0A7S2Y1F3_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1F3_9STRA)

HSP 1 Score: 190 bits (483), Expect = 1.270e-53
Identity = 90/172 (52.33%), Postives = 131/172 (76.16%), Query Frame = 0
Query:    5 DEYFRARCKILPSGVGAITKSDVAIAAVSNAFVVGFNVGADQEASREARAIGIDIGYYSVVYNVMDDIKKRLDELVSPTPDGVYTGRAIVKMIFNIGKVGNIAGSTVEDGVVNKGASVLLKRRGRIIHEGTLKTLKNVKADVQQMVAGTECGIQVEGFEDFQEDDILECYAL 176
            D++     K+L +  G I + D+A+A+VSNA V+GFNV A+ +A  +AR   I++ Y +VVY ++D++++R+ E++SPTP+G Y G+A +  +FNIGKVGNIAGS V DG V KG++V + R GR+IHE T+KTLKNVK DV++MVAGTECGIQ++GFE+F+  DI+E Y +
Sbjct:  547 DDFGEVTVKVLSATPGEINQGDIALASVSNALVIGFNVAANYQAQEDARKNEIEVMYATVVYEILDEMEERMQEVLSPTPEGEYIGKAEILQVFNIGKVGNIAGSNVLDGRVKKGSNVRVMRAGRVIHETTMKTLKNVKVDVEEMVAGTECGIQLQGFEEFEVGDIIESYIV 718          
BLAST of mRNA_H-elongata_contig51511.12414.1 vs. uniprot
Match: A0A7S2SSV4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSV4_9STRA)

HSP 1 Score: 179 bits (453), Expect = 4.030e-52
Identity = 85/176 (48.30%), Postives = 130/176 (73.86%), Query Frame = 0
Query:    1 MISEDEYFRARCKILPSGVGAITKSDVAIAAVSNAFVVGFNVGADQEASREARAIGIDIGYYSVVYNVMDDIKKRLDELVSPTPDGVYTGRAIVKMIFNIGKVGNIAGSTVEDGVVNKGASVLLKRRGRIIHEGTLKTLKNVKADVQQMVAGTECGIQVEGFEDFQEDDILECYAL 176
            +++EDE  + + K+L S VG +TKSDVAIA VS A+++ FNV A+ +A  +AR  G++IGYYS+VY+++++++ R+ E++SPTPDG   G+A VKM+F+IGKVG IAG  V DG + K  +V + R  RI++EG L TLK+VK DV ++ AG++CG+  E +E  +E D++ECY +
Sbjct:  174 LVAEDEITQVKVKVLQSSVGEVTKSDVAIAGVSKAWILAFNVAANFQAQEDAREKGLEIGYYSIVYDILEEMESRMQEVLSPTPDGELVGKAEVKMVFDIGKVGKIAGCGVVDGDILKAGNVRVLRGPRIVYEGQLTTLKHVKEDVTKISAGSDCGMAFEEWEGMEEGDVVECYKI 349          
BLAST of mRNA_H-elongata_contig51511.12414.1 vs. uniprot
Match: W7T2T0_9STRA (Translation initiation factor if-2 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7T2T0_9STRA)

HSP 1 Score: 182 bits (462), Expect = 9.740e-51
Identity = 83/174 (47.70%), Postives = 126/174 (72.41%), Query Frame = 0
Query:    4 EDEYFRARCKILPSGVGAITKSDVAIAAVSNAFVVGFNVGADQEASREARAIGIDIGYYSVVYNVMDDIKKRLDELVSPTPDGVYTGRAIVKMIFNIGKVGNIAGSTVEDGVVNKGASVLLKRRGRIIHEGTLKTLKNVKADVQQMVAGTECGIQVEGFEDFQEDDILECYALE 177
            ED+      K+L SGVG +T++DVA+A VS A ++ FNV AD  A  EAR  G++I Y++V+Y+++D ++ ++ E++SPTP+G Y G A VKM+F IGKVG +AG  V DG + +G +V + R   I+++G L+TL+NVK+DVQ+M AG ECG+  + +EDF+ DDI+ECY ++
Sbjct:  519 EDDRAEVGVKVLSSGVGDVTQNDVALAGVSQATILAFNVAADMNAQEEARKTGVEIEYHTVIYDILDKLEAKVQEILSPTPEGEYVGAARVKMVFEIGKVGKVAGCEVTDGTIKRGGTVRVLRGSEIVYKGPLRTLRNVKSDVQEMSAGQECGMSFKDYEDFRPDDIVECYVVD 692          
BLAST of mRNA_H-elongata_contig51511.12414.1 vs. uniprot
Match: A0A7S2B294_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B294_9STRA)

HSP 1 Score: 179 bits (455), Expect = 2.050e-49
Identity = 91/173 (52.60%), Postives = 126/173 (72.83%), Query Frame = 0
Query:    4 EDEYFRARCKILPSGVGAITKSDVAIAAVSNAFVVGFNVGADQEASREARAIGIDIGYYSVVYNVMDDIKKRLDELVSPTPDGVYTGRAIVKMIFNIGKVGNIAGSTVEDGVVNKGASVLLKRRGRIIHEGTLKTLKNVKADVQQMVAGTECGIQVEGFEDFQEDDILECYAL 176
            ++E  R + K+L SGVG +T+SD+AIA VSNA+ + FNV    +A  +AR   ++IGYYSVVY+V+D+++ R+ E++SPTP+G YTG+A VK IF+IGKVG IAG  V DG V K A+  + R  RI+HEG LKTLK+VK DVQ M AG+ECG+  + +E+  E DI+E Y +
Sbjct:  608 KNEIARVKVKVLLSGVGDVTQSDLAIADVSNAWTIAFNVATIYQAQEDARNKNLEIGYYSVVYDVLDEMEVRMKEVLSPTPEGDYTGKAEVKAIFDIGKVGKIAGCAVLDGEVLKSANFRVLRGPRIVHEGRLKTLKHVKEDVQSMSAGSECGVNFQDWEEMMEGDIIESYVM 780          
BLAST of mRNA_H-elongata_contig51511.12414.1 vs. uniprot
Match: A0A7S2PSJ2_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PSJ2_9STRA)

HSP 1 Score: 162 bits (409), Expect = 1.670e-45
Identity = 81/174 (46.55%), Postives = 120/174 (68.97%), Query Frame = 0
Query:    4 EDEYFRARCKILPSGVGAITKSDVAIAAVS-NAFVVGFNVGADQEASREARAIGIDIGYYSVVYNVMDDIKKRLDELVSPTPDGVYTGRAIVKMIFNIGKVGNIAGSTVEDGVVNKGASVLLKRRGRIIHEGTLKTLKNVKADVQQMVAGTECGIQVEGFEDFQEDDILECYAL 176
            E+E      K+L S  G ITKSD+A+A+V+ +  V+ FN GA+  A  +ARA+G+ I YYSVVY+ ++ ++ R+ E++SPTP+G Y G AIV+ +FNIG  GNIAGS   DG++ KG++V + R  +I+ E  +KTL+N KA+V  +  G ECGI +  +EDF+ DDI+E Y +
Sbjct:  177 ENEEAEVGIKVLISEAGDITKSDIAVASVTPDTTVIAFNTGANAAAQDDARALGVPIEYYSVVYDAIESVECRMQEVLSPTPEGEYVGSAIVQEVFNIGGTGNIAGSKCRDGIIKKGSNVRVMRGDKILIESKVKTLRNFKAEVDAITTGDECGIGLLDYEDFEPDDIIESYVV 350          
BLAST of mRNA_H-elongata_contig51511.12414.1 vs. uniprot
Match: A0A2M8CVQ4_9PROT (Translation initiation factor IF-2 n=1 Tax=Alphaproteobacteria bacterium CG_4_9_14_3_um_filter_47_13 TaxID=1973899 RepID=A0A2M8CVQ4_9PROT)

HSP 1 Score: 167 bits (423), Expect = 7.360e-45
Identity = 84/173 (48.55%), Postives = 116/173 (67.05%), Query Frame = 0
Query:    4 EDEYFRARCKILPSGVGAITKSDVAIAAVSNAFVVGFNVGADQEASREARAIGIDIGYYSVVYNVMDDIKKRLDELVSPTPDGVYTGRAIVKMIFNIGKVGNIAGSTVEDGVVNKGASVLLKRRGRIIHEGTLKTLKNVKADVQQMVAGTECGIQVEGFEDFQEDDILECYAL 176
            EDE      K+L SG G IT+SDV +A  S A ++GFNV A+ +A   A   GI+I YY+V+YN++DD+K  L  +++PT    Y G+A++K +F I K+GNIAG  V  G V +GA V L R   +IHEGTLKTLK  K +V+++  GTECG+  EG+ED +E DI+ECY +
Sbjct:  655 EDENEDVTIKVLHSGAGGITESDVTLANASGAIIIGFNVRANTQARALAEHEGIEIRYYNVIYNIIDDVKNILSGMLAPTKREQYLGQALIKQVFKITKIGNIAGCVVSIGSVKRGAKVRLLREDVVIHEGTLKTLKRHKDEVKEVKEGTECGMAFEGYEDIKEGDIIECYEI 827          
BLAST of mRNA_H-elongata_contig51511.12414.1 vs. uniprot
Match: A0A4Q3FK89_9HYPH (Translation initiation factor IF-2 (Fragment) n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A4Q3FK89_9HYPH)

HSP 1 Score: 156 bits (394), Expect = 3.540e-44
Identity = 76/167 (45.51%), Postives = 110/167 (65.87%), Query Frame = 0
Query:   11 RCKILPSGVGAITKSDVAIAAVSNAFVVGFNVGADQEASREARAIGIDIGYYSVVYNVMDDIKKRLDELVSPTPDGVYTGRAIVKMIFNIGKVGNIAGSTVEDGVVNKGASVLLKRRGRIIHEGTLKTLKNVKADVQQMVAGTECGIQVEGFEDFQEDDILECYALE 177
            R ++L SGVGAIT+SDV +A  S A V+GFNV A +EA   A   G++I YY+++YN+MDD+K  +  L++PT      G A +  IF++ KVG IAG  V DG + +GA+V L R   ++HEG L  LK  K D +++VAG ECG+  E ++D +  D++ECY +E
Sbjct:   97 RARVLSSGVGAITESDVTLAQASGAVVLGFNVRAHKEAREAADRAGVEIRYYNIIYNLMDDVKDAMSGLLAPTLRETMLGNATILEIFSVSKVGKIAGCRVTDGTIERGANVRLIRDNVVVHEGKLSQLKRFKDDAKEVVAGQECGMSFENYQDMRAGDVIECYRVE 263          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51511.12414.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJE9_ECTSI4.660e-9181.36PTIF2, plastid translation intiation factor 2 n=2 ... [more]
A0A835ZAQ9_9STRA4.360e-7164.41P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S3Y8J2_HETAK4.920e-5656.32Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2Y1F3_9STRA1.270e-5352.33Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]
A0A7S2SSV4_9STRA4.030e-5248.30Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
W7T2T0_9STRA9.740e-5147.70Translation initiation factor if-2 n=3 Tax=Monodop... [more]
A0A7S2B294_9STRA2.050e-4952.60Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2PSJ2_9STRA1.670e-4546.55Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A2M8CVQ4_9PROT7.360e-4548.55Translation initiation factor IF-2 n=1 Tax=Alphapr... [more]
A0A4Q3FK89_9HYPH3.540e-4445.51Translation initiation factor IF-2 (Fragment) n=1 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023115Translation initiation factor IF- 2, domain 3PFAMPF11987IF-2coord: 10..73
e-value: 3.9E-17
score: 62.3
IPR036925Translation initiation factor IF-2, domain 3 superfamilyGENE3D3.40.50.10050coord: 1..83
e-value: 2.3E-19
score: 71.2
IPR036925Translation initiation factor IF-2, domain 3 superfamilySUPERFAMILY52156Initiation factor IF2/eIF5b, domain 3coord: 11..90
NoneNo IPR availableGENE3D2.40.30.10coord: 86..177
e-value: 5.8E-27
score: 95.7
NoneNo IPR availablePANTHERPTHR43381:SF5TRANSLATION INITIATION FACTOR IF-2, MITOCHONDRIALcoord: 10..175
IPR015760Translation initiation factor IF- 2PANTHERPTHR43381FAMILY NOT NAMEDcoord: 10..175
IPR000178Translation initiation factor aIF-2, bacterial-likePROSITEPS01176IF2coord: 134..156
IPR009000Translation protein, beta-barrel domain superfamilySUPERFAMILY50447Translation proteinscoord: 88..175

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51511contigH-elongata_contig51511:725..3080 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51511.12414.1mRNA_H-elongata_contig51511.12414.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig51511 719..3080 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig51511.12414.1 ID=prot_H-elongata_contig51511.12414.1|Name=mRNA_H-elongata_contig51511.12414.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=178bp
MISEDEYFRARCKILPSGVGAITKSDVAIAAVSNAFVVGFNVGADQEASR
EARAIGIDIGYYSVVYNVMDDIKKRLDELVSPTPDGVYTGRAIVKMIFNI
GKVGNIAGSTVEDGVVNKGASVLLKRRGRIIHEGTLKTLKNVKADVQQMV
AGTECGIQVEGFEDFQEDDILECYALE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR023115TIF_IF2_dom3
IPR036925TIF_IF2_dom3_sf
IPR015760TIF_IF2
IPR000178TF_IF2_bacterial-like
IPR009000Transl_B-barrel_sf