mRNA_H-elongata_contig51174.12376.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig51174.12376.1 vs. uniprot
Match: A0A6H5L7Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y8_9PHAE) HSP 1 Score: 188 bits (478), Expect = 3.930e-53 Identity = 92/141 (65.25%), Postives = 109/141 (77.30%), Query Frame = 1
Query: 10 MVHTISANARVPDKNTCITNMRDVKKTTMESVASLLEGEDMCVTADGWTSCANDTYMPPTVILVTRAWELITLLVSCKKSEETTTGDALADGIKAAVARHGLEGKVMAITTDCESFMVKIGRLLE-ESGVCTHIGCCNHRL 429
MVH I +ARVP+K C+T MR VKK ME V+ L+EGE +C+T+DGWTSCANDTYM T L+T AW+L+TL V C KSE TTTGDALA GIKA VA+HGL GKV A+TTDCE MVK+GRLL ++ V T IGCCN+RL
Sbjct: 1 MVHAIRPSARVPEKKDCVTTMRTVKKCMMEKVSRLIEGEQVCITSDGWTSCANDTYMSLTFTLITSAWKLVTLSVDCSKSEGTTTGDALAAGIKATVAKHGLTGKVTAVTTDCEPSMVKMGRLLAGDATVSTQIGCCNYRL 141
BLAST of mRNA_H-elongata_contig51174.12376.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE) HSP 1 Score: 107 bits (268), Expect = 2.010e-24 Identity = 51/105 (48.57%), Postives = 71/105 (67.62%), Query Frame = 1
Query: 115 LEGEDMCVTADGWTSCANDTYMPPTVILVTRAWELITLLVSCKKSEETTTGDALADGIKAAVARHGLEGKVMAITTDCESFMVKIGRLLEESGVCTHIGCCNHRL 429
+ GE + +T+DGWT +NDTYM T ++ ++L+ L + CKK T G+ L + +KA +AR+GL G+ +AITTDCE MVK GRLLEE+ TH+GC HRL
Sbjct: 1 MTGEHVALTSDGWTPASNDTYMSFTCTYISSNFDLVALCLECKKHGWRTAGEDLVEAVKAMIARNGLTGRTVAITTDCELSMVKAGRLLEENEGVTHLGCFCHRL 105
BLAST of mRNA_H-elongata_contig51174.12376.1 vs. uniprot
Match: A0A6H5KVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI1_9PHAE) HSP 1 Score: 88.6 bits (218), Expect = 5.890e-18 Identity = 43/90 (47.78%), Postives = 60/90 (66.67%), Query Frame = 1
Query: 157 SCANDTYMPPTVILVTRAWELITLLVSCKKSEETTTGDALADGIKAAVARHGLEGKVMAITTDCESFMVKIGRLLEESGVCTHIGCCNHR 426
S +NDTYM T ++ ++L+ L + KK TTG+ L + +KA +AR+GL G+ +A TTDCE FMVK GRLLEE+ +H+GC HR
Sbjct: 3 SASNDTYMTFTCTYISSNFDLVALCLEYKKHGGRTTGEDLVEAVKAMIARNGLTGRTVATTTDCEPFMVKAGRLLEENEGVSHLGCFCHR 92
BLAST of mRNA_H-elongata_contig51174.12376.1 vs. uniprot
Match: UPI0020143A6F (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Megalobrama amblycephala TaxID=75352 RepID=UPI0020143A6F) HSP 1 Score: 61.2 bits (147), Expect = 3.490e-8 Identity = 32/119 (26.89%), Postives = 64/119 (53.78%), Query Frame = 1
Query: 82 KKTTMESVASLLEGEDMCVTADGWTSCANDTYMPPTVILVTRAWELITLLVSCKKSEETTTGDALADGIKAAVARHGLEGK---VMAITTDCESFMVKIGRLLEESGVCTHIGCCNHRL 429
++T + + +L + + +T DGWTS A +Y+ T ++T WE++ ++ + ET TG +A+ +K+AV++ GL+ + +T + + V + E+G+ H+ C H L
Sbjct: 100 RETKSKVIETLRKAYSVSITTDGWTSRATQSYLTVTAHVITSEWEMVNFVLQTRPLFETHTGANIAEVLKSAVSKWGLQKANHGIAVVTDNARNMDVAV----REAGLAPHVRCFAHTL 214
BLAST of mRNA_H-elongata_contig51174.12376.1 vs. uniprot
Match: UPI001ED88F3E (E3 SUMO-protein ligase ZBED1-like n=3 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED88F3E) HSP 1 Score: 57.8 bits (138), Expect = 5.690e-7 Identity = 40/145 (27.59%), Postives = 66/145 (45.52%), Query Frame = 1
Query: 1 FHGMVHTISANARVPDKNTCITNMRDV--KKTTMESVASLLEGEDMCVTADGWTSCANDTYMPPTVILVTRAWELITLLVSCKKSEETTTGDALADGIKAAVARHGLEGKVMAITTDCESFMVKIGRLLEESGVCTHIGCCNHRL 429
F + ++ N P + T N ++ KT ME + + +TADGWTS ND+Y+ T + +L + L+ C + T +AD I + L+ KV+A+ +D + M+ ++L THI C H L
Sbjct: 150 FKSFLQLLNPNYHPPSRKTLANNYLELLYSKTAMELKEKIKKVTFCSITADGWTSATNDSYLAVTAHFICNG-QLQSALLDCIYFTDRHTATNIADEIHRIIRSWDLDSKVVALISDSAANMLAAAKILGW----THIPCFAHTL 289
BLAST of mRNA_H-elongata_contig51174.12376.1 vs. uniprot
Match: UPI0018C29829 (zinc finger BED domain-containing protein 4 n=1 Tax=Bombyx mori TaxID=7091 RepID=UPI0018C29829) HSP 1 Score: 57.8 bits (138), Expect = 5.730e-7 Identity = 40/126 (31.75%), Postives = 63/126 (50.00%), Query Frame = 1
Query: 52 NTCITNMRDVKKTTMESVASLLEGEDMCVTADGWTSCANDTYMPPTVILVTRAWELITLLVSCKKSEETTTGDALADGIKAAVARHGLEGKVMAITTDCESFMVKIGRLLEESGVCTHIGCCNHRL 429
N I + + K T+++ LL+ E++C+TAD WTS AN++Y+ T +T +EL T L+ C +E+ T D + + V L K+ + TD + I R + G H GC H L
Sbjct: 178 NVMIPTLFNKTKETLKT--ELLQIENICLTADLWTSRANESYLAVTGHFITDDYELKTCLLDCSNFQESHTNDNIQTVLIVMVKEWNLTNKINFVITDNAA---NIQRAISNIGW-KHYGCYGHTL 297
BLAST of mRNA_H-elongata_contig51174.12376.1 vs. uniprot
Match: UPI000811684C (zinc finger BED domain-containing protein 1-like n=1 Tax=Rhagoletis zephyria TaxID=28612 RepID=UPI000811684C) HSP 1 Score: 53.1 bits (126), Expect = 1.680e-5 Identity = 39/148 (26.35%), Postives = 72/148 (48.65%), Query Frame = 1
Query: 1 FHGMVHTISANARVPDKNTCITNMRDVK-KTTMESVASLL-EGEDMCVTADGWTSCANDTYMPPTVILVTRAWE---LITLLVSCKKSEETTTGDALADGIKAAVARHGLEGKVMAITTDCESFMVKIGRLLEESGVCTHIGCCNHRL 429
F ++ ++ N ++P + T T++ K T+E+V + L + +C+T DGWTS A+D++ T ++ + E L + L++C + TG+ + + ++ G+ K+ I TD + M R G H GC H L
Sbjct: 17 FKRFINMLNPNYKLPTRKTLSTSLIPAAYKETLEAVKNRLSKAFAICLTVDGWTSRAHDSFFSVTAHYISESSERTFLASDLITCVSYADRHTGENIKNKLREICDEWGIANKIAVIVTDNAANMKAAVR----DGGWRHWGCFAHTL 160
BLAST of mRNA_H-elongata_contig51174.12376.1 vs. uniprot
Match: UPI000B390FEB (zinc finger BED domain-containing protein 4-like n=1 Tax=Helicoverpa armigera TaxID=29058 RepID=UPI000B390FEB) HSP 1 Score: 53.5 bits (127), Expect = 1.700e-5 Identity = 37/116 (31.90%), Postives = 60/116 (51.72%), Query Frame = 1
Query: 85 KTTMESVASLLEGEDMCVTADGWTSCANDTYMPPTVILVTRAWELITLLVSCKKSEETTTGDALADGIKAAVARHGLE-GKVMAITTDCESFMVKIGRLLEESGVCTHIGCCNHRL 429
KTT+ S+ E +C+TAD WTS AN++Y+ T +T +EL T+L+ C E++ T + + + ++++ L K+ I TD + I R + G H GC H L
Sbjct: 193 KTTLGSI------EHLCLTADLWTSRANESYLAVTGHFITEEFELKTILLDCSNFEDSHTSENIQSVLNDVMSKYELTLNKINFIVTDNAA---NIQRAVTNIGW-KHYGCYGHTL 298
BLAST of mRNA_H-elongata_contig51174.12376.1 vs. uniprot
Match: A0A6P5VG43_DROOB (zinc finger BED domain-containing protein 1-like n=1 Tax=Drosophila obscura TaxID=7282 RepID=A0A6P5VG43_DROOB) HSP 1 Score: 53.1 bits (126), Expect = 2.200e-5 Identity = 41/149 (27.52%), Postives = 71/149 (47.65%), Query Frame = 1
Query: 1 FHGMVHTISANARVPDK----NTCITNMRDVKKTTMESVASLLEGEDMCVTADGWTSCANDTYMPPTVILVTRAWELITLLVSCKK--SEETTTGDALADGIKAAVARHGLEGKVMAITTDCESFMVKIGRLLEESGVCTHIGCCNHRL 429
F ++ + ++P K N I N + KT ++ +E ++ +TADGWTS AN+ Y+ T + ++L + ++S ++ T +A+ I+ + GL KV+ I TD ++ M K E G+ TH C H L
Sbjct: 17 FRELLAEMDPRYKLPSKTHLRNVAIPNAYEDLKTKLKFALDCVE--NVAITADGWTSMANEGYLTITCHFINSEFQLNSAVLSTTTLINQTNHTAANIAESIRVVLVEWGLVEKVVCIVTDNDASMKKA---CERLGI-THFPCFAHTL 159
BLAST of mRNA_H-elongata_contig51174.12376.1 vs. uniprot
Match: UPI00177D4E93 (zinc finger BED domain-containing protein 6-like n=1 Tax=Rhagoletis pomonella TaxID=28610 RepID=UPI00177D4E93) HSP 1 Score: 52.8 bits (125), Expect = 3.020e-5 Identity = 39/148 (26.35%), Postives = 72/148 (48.65%), Query Frame = 1
Query: 1 FHGMVHTISANARVPDKNTCITNMRDVK-KTTMESVASLL-EGEDMCVTADGWTSCANDTYMPPTVILVTRAWE---LITLLVSCKKSEETTTGDALADGIKAAVARHGLEGKVMAITTDCESFMVKIGRLLEESGVCTHIGCCNHRL 429
F ++ ++ N ++P + T T++ K T+E+V + L + +C+T DGWTS A+D++ T ++ + E L + L++C + TG+ + + ++ G+ K+ I TD + M R G H GC H L
Sbjct: 138 FKRFINMLNPNYKLPTRKTLSTSLIPAAYKETLEAVKNRLSKAFAICLTVDGWTSRAHDSFFSVTAHYISESSERTFLASDLITCVSYADRHTGENIKNKLREICDECGIANKIAVIVTDNAANMKAAVR----DGGWRHWGCFAHTL 281 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51174.12376.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig51174.12376.1 >prot_H-elongata_contig51174.12376.1 ID=prot_H-elongata_contig51174.12376.1|Name=mRNA_H-elongata_contig51174.12376.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=140bp MVHTISANARVPDKNTCITNMRDVKKTTMESVASLLEGEDMCVTADGWTSback to top mRNA from alignment at H-elongata_contig51174:3240..3668- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig51174.12376.1 ID=mRNA_H-elongata_contig51174.12376.1|Name=mRNA_H-elongata_contig51174.12376.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=429bp|location=Sequence derived from alignment at H-elongata_contig51174:3240..3668- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig51174:3240..3668- >mRNA_H-elongata_contig51174.12376.1 ID=mRNA_H-elongata_contig51174.12376.1|Name=mRNA_H-elongata_contig51174.12376.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=840bp|location=Sequence derived from alignment at H-elongata_contig51174:3240..3668- (Himanthalia elongata Himel1 dioecious)back to top |