mRNA_H-elongata_contig51174.12376.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51174.12376.1
Unique NamemRNA_H-elongata_contig51174.12376.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig51174.12376.1 vs. uniprot
Match: A0A6H5L7Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y8_9PHAE)

HSP 1 Score: 188 bits (478), Expect = 3.930e-53
Identity = 92/141 (65.25%), Postives = 109/141 (77.30%), Query Frame = 1
Query:   10 MVHTISANARVPDKNTCITNMRDVKKTTMESVASLLEGEDMCVTADGWTSCANDTYMPPTVILVTRAWELITLLVSCKKSEETTTGDALADGIKAAVARHGLEGKVMAITTDCESFMVKIGRLLE-ESGVCTHIGCCNHRL 429
            MVH I  +ARVP+K  C+T MR VKK  ME V+ L+EGE +C+T+DGWTSCANDTYM  T  L+T AW+L+TL V C KSE TTTGDALA GIKA VA+HGL GKV A+TTDCE  MVK+GRLL  ++ V T IGCCN+RL
Sbjct:    1 MVHAIRPSARVPEKKDCVTTMRTVKKCMMEKVSRLIEGEQVCITSDGWTSCANDTYMSLTFTLITSAWKLVTLSVDCSKSEGTTTGDALAAGIKATVAKHGLTGKVTAVTTDCEPSMVKMGRLLAGDATVSTQIGCCNYRL 141          
BLAST of mRNA_H-elongata_contig51174.12376.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 2.010e-24
Identity = 51/105 (48.57%), Postives = 71/105 (67.62%), Query Frame = 1
Query:  115 LEGEDMCVTADGWTSCANDTYMPPTVILVTRAWELITLLVSCKKSEETTTGDALADGIKAAVARHGLEGKVMAITTDCESFMVKIGRLLEESGVCTHIGCCNHRL 429
            + GE + +T+DGWT  +NDTYM  T   ++  ++L+ L + CKK    T G+ L + +KA +AR+GL G+ +AITTDCE  MVK GRLLEE+   TH+GC  HRL
Sbjct:    1 MTGEHVALTSDGWTPASNDTYMSFTCTYISSNFDLVALCLECKKHGWRTAGEDLVEAVKAMIARNGLTGRTVAITTDCELSMVKAGRLLEENEGVTHLGCFCHRL 105          
BLAST of mRNA_H-elongata_contig51174.12376.1 vs. uniprot
Match: A0A6H5KVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI1_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 5.890e-18
Identity = 43/90 (47.78%), Postives = 60/90 (66.67%), Query Frame = 1
Query:  157 SCANDTYMPPTVILVTRAWELITLLVSCKKSEETTTGDALADGIKAAVARHGLEGKVMAITTDCESFMVKIGRLLEESGVCTHIGCCNHR 426
            S +NDTYM  T   ++  ++L+ L +  KK    TTG+ L + +KA +AR+GL G+ +A TTDCE FMVK GRLLEE+   +H+GC  HR
Sbjct:    3 SASNDTYMTFTCTYISSNFDLVALCLEYKKHGGRTTGEDLVEAVKAMIARNGLTGRTVATTTDCEPFMVKAGRLLEENEGVSHLGCFCHR 92          
BLAST of mRNA_H-elongata_contig51174.12376.1 vs. uniprot
Match: UPI0020143A6F (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Megalobrama amblycephala TaxID=75352 RepID=UPI0020143A6F)

HSP 1 Score: 61.2 bits (147), Expect = 3.490e-8
Identity = 32/119 (26.89%), Postives = 64/119 (53.78%), Query Frame = 1
Query:   82 KKTTMESVASLLEGEDMCVTADGWTSCANDTYMPPTVILVTRAWELITLLVSCKKSEETTTGDALADGIKAAVARHGLEGK---VMAITTDCESFMVKIGRLLEESGVCTHIGCCNHRL 429
            ++T  + + +L +   + +T DGWTS A  +Y+  T  ++T  WE++  ++  +   ET TG  +A+ +K+AV++ GL+     +  +T +  +  V +     E+G+  H+ C  H L
Sbjct:  100 RETKSKVIETLRKAYSVSITTDGWTSRATQSYLTVTAHVITSEWEMVNFVLQTRPLFETHTGANIAEVLKSAVSKWGLQKANHGIAVVTDNARNMDVAV----REAGLAPHVRCFAHTL 214          
BLAST of mRNA_H-elongata_contig51174.12376.1 vs. uniprot
Match: UPI001ED88F3E (E3 SUMO-protein ligase ZBED1-like n=3 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED88F3E)

HSP 1 Score: 57.8 bits (138), Expect = 5.690e-7
Identity = 40/145 (27.59%), Postives = 66/145 (45.52%), Query Frame = 1
Query:    1 FHGMVHTISANARVPDKNTCITNMRDV--KKTTMESVASLLEGEDMCVTADGWTSCANDTYMPPTVILVTRAWELITLLVSCKKSEETTTGDALADGIKAAVARHGLEGKVMAITTDCESFMVKIGRLLEESGVCTHIGCCNHRL 429
            F   +  ++ N   P + T   N  ++   KT ME    + +     +TADGWTS  ND+Y+  T   +    +L + L+ C    +  T   +AD I   +    L+ KV+A+ +D  + M+   ++L      THI C  H L
Sbjct:  150 FKSFLQLLNPNYHPPSRKTLANNYLELLYSKTAMELKEKIKKVTFCSITADGWTSATNDSYLAVTAHFICNG-QLQSALLDCIYFTDRHTATNIADEIHRIIRSWDLDSKVVALISDSAANMLAAAKILGW----THIPCFAHTL 289          
BLAST of mRNA_H-elongata_contig51174.12376.1 vs. uniprot
Match: UPI0018C29829 (zinc finger BED domain-containing protein 4 n=1 Tax=Bombyx mori TaxID=7091 RepID=UPI0018C29829)

HSP 1 Score: 57.8 bits (138), Expect = 5.730e-7
Identity = 40/126 (31.75%), Postives = 63/126 (50.00%), Query Frame = 1
Query:   52 NTCITNMRDVKKTTMESVASLLEGEDMCVTADGWTSCANDTYMPPTVILVTRAWELITLLVSCKKSEETTTGDALADGIKAAVARHGLEGKVMAITTDCESFMVKIGRLLEESGVCTHIGCCNHRL 429
            N  I  + +  K T+++   LL+ E++C+TAD WTS AN++Y+  T   +T  +EL T L+ C   +E+ T D +   +   V    L  K+  + TD  +    I R +   G   H GC  H L
Sbjct:  178 NVMIPTLFNKTKETLKT--ELLQIENICLTADLWTSRANESYLAVTGHFITDDYELKTCLLDCSNFQESHTNDNIQTVLIVMVKEWNLTNKINFVITDNAA---NIQRAISNIGW-KHYGCYGHTL 297          
BLAST of mRNA_H-elongata_contig51174.12376.1 vs. uniprot
Match: UPI000811684C (zinc finger BED domain-containing protein 1-like n=1 Tax=Rhagoletis zephyria TaxID=28612 RepID=UPI000811684C)

HSP 1 Score: 53.1 bits (126), Expect = 1.680e-5
Identity = 39/148 (26.35%), Postives = 72/148 (48.65%), Query Frame = 1
Query:    1 FHGMVHTISANARVPDKNTCITNMRDVK-KTTMESVASLL-EGEDMCVTADGWTSCANDTYMPPTVILVTRAWE---LITLLVSCKKSEETTTGDALADGIKAAVARHGLEGKVMAITTDCESFMVKIGRLLEESGVCTHIGCCNHRL 429
            F   ++ ++ N ++P + T  T++     K T+E+V + L +   +C+T DGWTS A+D++   T   ++ + E   L + L++C    +  TG+ + + ++      G+  K+  I TD  + M    R     G   H GC  H L
Sbjct:   17 FKRFINMLNPNYKLPTRKTLSTSLIPAAYKETLEAVKNRLSKAFAICLTVDGWTSRAHDSFFSVTAHYISESSERTFLASDLITCVSYADRHTGENIKNKLREICDEWGIANKIAVIVTDNAANMKAAVR----DGGWRHWGCFAHTL 160          
BLAST of mRNA_H-elongata_contig51174.12376.1 vs. uniprot
Match: UPI000B390FEB (zinc finger BED domain-containing protein 4-like n=1 Tax=Helicoverpa armigera TaxID=29058 RepID=UPI000B390FEB)

HSP 1 Score: 53.5 bits (127), Expect = 1.700e-5
Identity = 37/116 (31.90%), Postives = 60/116 (51.72%), Query Frame = 1
Query:   85 KTTMESVASLLEGEDMCVTADGWTSCANDTYMPPTVILVTRAWELITLLVSCKKSEETTTGDALADGIKAAVARHGLE-GKVMAITTDCESFMVKIGRLLEESGVCTHIGCCNHRL 429
            KTT+ S+      E +C+TAD WTS AN++Y+  T   +T  +EL T+L+ C   E++ T + +   +   ++++ L   K+  I TD  +    I R +   G   H GC  H L
Sbjct:  193 KTTLGSI------EHLCLTADLWTSRANESYLAVTGHFITEEFELKTILLDCSNFEDSHTSENIQSVLNDVMSKYELTLNKINFIVTDNAA---NIQRAVTNIGW-KHYGCYGHTL 298          
BLAST of mRNA_H-elongata_contig51174.12376.1 vs. uniprot
Match: A0A6P5VG43_DROOB (zinc finger BED domain-containing protein 1-like n=1 Tax=Drosophila obscura TaxID=7282 RepID=A0A6P5VG43_DROOB)

HSP 1 Score: 53.1 bits (126), Expect = 2.200e-5
Identity = 41/149 (27.52%), Postives = 71/149 (47.65%), Query Frame = 1
Query:    1 FHGMVHTISANARVPDK----NTCITNMRDVKKTTMESVASLLEGEDMCVTADGWTSCANDTYMPPTVILVTRAWELITLLVSCKK--SEETTTGDALADGIKAAVARHGLEGKVMAITTDCESFMVKIGRLLEESGVCTHIGCCNHRL 429
            F  ++  +    ++P K    N  I N  +  KT ++     +E  ++ +TADGWTS AN+ Y+  T   +   ++L + ++S     ++   T   +A+ I+  +   GL  KV+ I TD ++ M K     E  G+ TH  C  H L
Sbjct:   17 FRELLAEMDPRYKLPSKTHLRNVAIPNAYEDLKTKLKFALDCVE--NVAITADGWTSMANEGYLTITCHFINSEFQLNSAVLSTTTLINQTNHTAANIAESIRVVLVEWGLVEKVVCIVTDNDASMKKA---CERLGI-THFPCFAHTL 159          
BLAST of mRNA_H-elongata_contig51174.12376.1 vs. uniprot
Match: UPI00177D4E93 (zinc finger BED domain-containing protein 6-like n=1 Tax=Rhagoletis pomonella TaxID=28610 RepID=UPI00177D4E93)

HSP 1 Score: 52.8 bits (125), Expect = 3.020e-5
Identity = 39/148 (26.35%), Postives = 72/148 (48.65%), Query Frame = 1
Query:    1 FHGMVHTISANARVPDKNTCITNMRDVK-KTTMESVASLL-EGEDMCVTADGWTSCANDTYMPPTVILVTRAWE---LITLLVSCKKSEETTTGDALADGIKAAVARHGLEGKVMAITTDCESFMVKIGRLLEESGVCTHIGCCNHRL 429
            F   ++ ++ N ++P + T  T++     K T+E+V + L +   +C+T DGWTS A+D++   T   ++ + E   L + L++C    +  TG+ + + ++      G+  K+  I TD  + M    R     G   H GC  H L
Sbjct:  138 FKRFINMLNPNYKLPTRKTLSTSLIPAAYKETLEAVKNRLSKAFAICLTVDGWTSRAHDSFFSVTAHYISESSERTFLASDLITCVSYADRHTGENIKNKLREICDECGIANKIAVIVTDNAANMKAAVR----DGGWRHWGCFAHTL 281          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51174.12376.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5L7Y8_9PHAE3.930e-5365.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHP9_9PHAE2.010e-2448.57Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A6H5KVI1_9PHAE5.890e-1847.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI0020143A6F3.490e-826.89E3 SUMO-protein ligase ZBED1-like n=1 Tax=Megalobr... [more]
UPI001ED88F3E5.690e-727.59E3 SUMO-protein ligase ZBED1-like n=3 Tax=Ischnura... [more]
UPI0018C298295.730e-731.75zinc finger BED domain-containing protein 4 n=1 Ta... [more]
UPI000811684C1.680e-526.35zinc finger BED domain-containing protein 1-like n... [more]
UPI000B390FEB1.700e-531.90zinc finger BED domain-containing protein 4-like n... [more]
A0A6P5VG43_DROOB2.200e-527.52zinc finger BED domain-containing protein 1-like n... [more]
UPI00177D4E933.020e-526.35zinc finger BED domain-containing protein 6-like n... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51174contigH-elongata_contig51174:3240..3668 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.9
Seed ortholog evalue3.9e-24
Seed eggNOG ortholog2880.D8LCS5
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size429
Cds size420
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930838.2412791-CDS-H-elongata_contig51174:3239..36591622930838.2412791-CDS-H-elongata_contig51174:3239..3659Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51174 3240..3659 -
1691679591.890293-CDS-H-elongata_contig51174:3239..36591691679591.890293-CDS-H-elongata_contig51174:3239..3659Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51174 3240..3659 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930838.2579792-UTR-H-elongata_contig51174:3659..36681622930838.2579792-UTR-H-elongata_contig51174:3659..3668Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51174 3660..3668 -
1691679591.9029334-UTR-H-elongata_contig51174:3659..36681691679591.9029334-UTR-H-elongata_contig51174:3659..3668Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51174 3660..3668 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51174.12376.1prot_H-elongata_contig51174.12376.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51174 3240..3659 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51174.12376.1

>prot_H-elongata_contig51174.12376.1 ID=prot_H-elongata_contig51174.12376.1|Name=mRNA_H-elongata_contig51174.12376.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=140bp
MVHTISANARVPDKNTCITNMRDVKKTTMESVASLLEGEDMCVTADGWTS
CANDTYMPPTVILVTRAWELITLLVSCKKSEETTTGDALADGIKAAVARH
GLEGKVMAITTDCESFMVKIGRLLEESGVCTHIGCCNHRL
back to top

mRNA from alignment at H-elongata_contig51174:3240..3668-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51174.12376.1 ID=mRNA_H-elongata_contig51174.12376.1|Name=mRNA_H-elongata_contig51174.12376.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=429bp|location=Sequence derived from alignment at H-elongata_contig51174:3240..3668- (Himanthalia elongata Himel1 dioecious)
TTTCATGGAATGGTGCATACCATCAGCGCGAATGCCCGCGTTCCAGACAA GAACACCTGCATTACCAACATGCGCGATGTGAAGAAGACCACGATGGAGA GCGTCGCAAGCTTACTGGAGGGCGAAGATATGTGTGTCACTGCCGATGGC TGGACTTCTTGCGCCAACGACACGTACATGCCGCCGACAGTTATCCTTGT TACCAGGGCGTGGGAACTCATCACTCTCTTGGTGAGCTGCAAGAAGTCGG AGGAAACGACGACTGGTGATGCTCTTGCTGACGGTATCAAAGCCGCCGTG GCCAGACATGGCCTCGAGGGCAAGGTTATGGCGATTACTACAGACTGCGA GTCTTTCATGGTGAAGATAGGGCGCCTCCTCGAAGAAAGCGGCGTCTGCA CTCACATTGGTTGCTGCAATCACCGTCTC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig51174:3240..3668-

>mRNA_H-elongata_contig51174.12376.1 ID=mRNA_H-elongata_contig51174.12376.1|Name=mRNA_H-elongata_contig51174.12376.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=840bp|location=Sequence derived from alignment at H-elongata_contig51174:3240..3668- (Himanthalia elongata Himel1 dioecious)
ATGGTGCATACCATCAGCGCGAATGCCCGCGTTCCAGACAAGAACACCTG
CATTACCAACATGCGCGATGTGAAGAAGACCACGATGGAGAGCGTCGCAA
GCTTACTGGAGGGCGAAGATATGTGTGTCACTGCCGATGGCTGGACTTCT
TGCGCCAACGACACGTACATGCCGCCGACAGTTATCCTTGTTACCAGGGC
GTGGGAACTCATCACTCTCTTGGTGAGCTGCAAGAAGTCGGAGGAAACGA
CGACTGGTGATGCTCTTGCTGACGGTATCAAAGCCGCCGTGGCCAGACAT
GGCCTCGAGGGCAAGGTTATGGCGATTACTACAGACTGCGAGTCTTTCAT
GGTGAAGATAGGGCGCCTCCTCGAAGAAAGCGGCGTCTGCACTCACATTG
GTTGCTGCAATCACCGTCTCATGGTGCATACCATCAGCGCGAATGCCCGC
GTTCCAGACAAGAACACCTGCATTACCAACATGCGCGATGTGAAGAAGAC
CACGATGGAGAGCGTCGCAAGCTTACTGGAGGGCGAAGATATGTGTGTCA
CTGCCGATGGCTGGACTTCTTGCGCCAACGACACGTACATGCCGCCGACA
GTTATCCTTGTTACCAGGGCGTGGGAACTCATCACTCTCTTGGTGAGCTG
CAAGAAGTCGGAGGAAACGACGACTGGTGATGCTCTTGCTGACGGTATCA
AAGCCGCCGTGGCCAGACATGGCCTCGAGGGCAAGGTTATGGCGATTACT
ACAGACTGCGAGTCTTTCATGGTGAAGATAGGGCGCCTCCTCGAAGAAAG
CGGCGTCTGCACTCACATTGGTTGCTGCAATCACCGTCTC
back to top