mRNA_H-elongata_contig50357.12269.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig50357.12269.1 vs. uniprot
Match: A0A4V1T029_9SPHI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Sphingobacteriaceae bacterium TaxID=2021370 RepID=A0A4V1T029_9SPHI) HSP 1 Score: 187 bits (476), Expect = 7.270e-53 Identity = 114/290 (39.31%), Postives = 167/290 (57.59%), Query Frame = 3
Query: 141 VGHEIRFKRKIDKDGGIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRKVLSMIAAFGWEARQLDVDMAYLETDVEEEIYVELPEAYHDSRKQ--VGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADPCVFRRILHGIVVXXXXXXXDDLLVASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITLDRNAGTLKFDQHQYIQTVAEHFCVTKTS--IVPSAAGGKSFSKSDSLQTDAEVEEMRQIPYQEIVGALMWAVTMTRPGISFATHQLAKFNDNP 998
VG + FK K+D +G IE++K RLVA+GF Q G+ Y+E+ SP + S+R V++M+A + E Q+DV A+L +++EE++++ PE + K+ V LKK++YGL A W KF + + GF+ + D C++ +I G DD+L+A+ Q L F +KD+GEASY +G I+ DR+ G L Q YI V E F + K S IVP G K FS + + + E ++M QIPY IVG+LM+A T TRPGISFA L ++ NP
Sbjct: 8 VGCKWVFKTKLDSNGNIERHKARLVAKGFTQKDGVDYKETFSPVSKKDSLRIVMAMVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFVVDGKEHMVCKLKKSIYGLKQASRQWYLKFNDTVTSFGFKENIVDRCIYLKI-SGSKFIILVLYVDDILLATNDLGLLRQTKEFLSKNFEMKDMGEASYVIGIEISRDRSQGWLGLSQKAYINKVLERFKMDKCSAGIVPIQKGDK-FSLNQCPKNELERKQMEQIPYASIVGSLMYAQTCTRPGISFAVGMLGRYQSNP 295
BLAST of mRNA_H-elongata_contig50357.12269.1 vs. uniprot
Match: A0A6A3JRZ2_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3JRZ2_9STRA) HSP 1 Score: 177 bits (450), Expect = 1.320e-49 Identity = 109/289 (37.72%), Postives = 159/289 (55.02%), Query Frame = 3
Query: 141 VGHEIRFKRKIDKDGGIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRKVLSMIAAFGWEARQLDVDMAYLETDVEEEIYVELPEAYHDSRKQVGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADPCVF-RRILHGIVVXXXXXXXDDLLVASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITLDRNAGTLKFDQHQYIQTVAEHFCVTKTSIV--PSAAGGKSFSKSDSLQTDAEVEEMRQIPYQEIVGALMWAVTMTRPGISFATHQLAKFNDNP 998
+G F +K D+ G + +YK RLVA+GF+Q GI + E+ SP SIR VLS+ AA+ + QLD D A+L +++++ +Y+E+P ++R L KA+YGL A W K GF+ AD CV+ +R +G + DD+++A+ T D + L + F +K+LG A + LG I D AGTLK Q +YI V + F V P AAG K SK+ S TDAE MR PY+ ++G L++ T TRP I+F QL++F +NP
Sbjct: 38 IGCRWVFAKKRDQYGRVVRYKARLVAKGFKQKYGIDFFETYSPVANMNSIRVVLSVCAAYEYRMEQLDADTAFLNSELKDRVYMEVPFGIENARDYQYQLNKAIYGLKQAASAWNKTIHRVFLGNGFKSCGADQCVYVKRSKNGFIYVCLYV--DDMIIAAKTSEDIREVKDALKNAFKMKELGPAKFILGMEIDHDMTAGTLKIKQTRYIDDVVKRFGQENAKPVDNPCAAGLK-LSKTQSPGTDAEQNAMRSKPYRSLIGCLLYITTCTRPDIAFMATQLSRFLENP 323
BLAST of mRNA_H-elongata_contig50357.12269.1 vs. uniprot
Match: A0A2P6S2B9_ROSCH (Putative RNA-directed DNA polymerase n=2 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6S2B9_ROSCH) HSP 1 Score: 181 bits (460), Expect = 3.570e-49 Identity = 111/290 (38.28%), Postives = 162/290 (55.86%), Query Frame = 3
Query: 141 VGHEIRFKRKIDKDGGIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRKVLSMIAAFGWEARQLDVDMAYLETDVEEEIYVELPEAYHDSRKQ--VGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADPCVFRRILHGIVVXXXXXXXDDLLVASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITLDRNAGTLKFDQHQYIQTVAEHFCVTKTS--IVPSAAGGKSFSKSDSLQTDAEVEEMRQIPYQEIVGALMWAVTMTRPGISFATHQLAKFNDNP 998
VG + FK K D +G IE+YK RLVA+GF Q +GI Y+E+ SP + S+R +++++A F E Q+DV A+L ++EEE+++ PE + K+ V LKK++YGL A W KF + + GF+ + D C++ ++ G DD+L+AS+ + L F +KD+GEASY +G I DR+ G L Q YI+ V E F + K S I P G K FS Q + E + M +IPY VG+L++A T TRP ISFA L ++ NP
Sbjct: 61 VGCKWVFKTKRDSNGNIERYKARLVAKGFTQKEGIDYKETFSPVSKKDSLRIIMALVAHFDLELHQMDVKTAFLNGNLEEEVFMNQPEGFSSKGKEHMVCKLKKSIYGLKQASRQWYLKFNDTVVSFGFKENIVDRCIYLKV-SGSKFIFLILYVDDILLASSDLGLLHETKNFLSKKFEMKDMGEASYVIGIEIFRDRSRGLLGLSQKAYIERVLERFGMEKCSPSIAPIQKGDK-FSLKQCPQNELERKGMERIPYASAVGSLVYAQTCTRPDISFAVGMLGRYQSNP 348
BLAST of mRNA_H-elongata_contig50357.12269.1 vs. uniprot
Match: A0A5N6M1Y8_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6M1Y8_9ASTR) HSP 1 Score: 181 bits (459), Expect = 1.100e-48 Identity = 106/291 (36.43%), Postives = 169/291 (58.08%), Query Frame = 3
Query: 141 VGHEIRFKRKIDKDGGIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRKVLSMIAAFGWEARQLDVDMAYLETDVEEEIYVELPEAYHDSRKQ--VGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADPCVFRRILHGIVVXXXXXXXDDLLVASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITLDRNAGTLKFDQHQYIQTVAEHFCVTKTSIVPSAAG---GKSFSKSDSLQTDAEVEEMRQIPYQEIVGALMWAVTMTRPGISFATHQLAKFNDNP 998
VG + +K K+D +G IE+YK RLVA+G+ Q +GI Y+E+ SP + S+R V++++A F E Q+DV A+L D+ E+++++ PE + K+ V L K++YGL A W KF ++ F ++Q D C++ +I G DD+L+AS ++ R L + F +KDLGEASY +G I +R+ GTL Q YI+ + + F + + S PS A G +F +++AE+++MR IPY +VG+LM+A TRP I++ T L ++ NP
Sbjct: 154 VGCKWVYKTKLDPNGNIERYKARLVAKGYTQREGIDYQETFSPVSRKDSLRIVMALVAHFDLELHQMDVKTAFLNGDLHEDVFMKQPEGFEPKGKEHMVCKLNKSIYGLKQASRQWYIKFDEVMKKHNFIKNQVDQCIYLKI-SGSKFVILVLYVDDILLASNNLDMLYESKRLLSANFDMKDLGEASYVIGIEIHRNRSIGTLGLSQKAYIERILKRFNMQQCS--PSVAPVVKGDNFGSYQCPKSEAEIDQMRLIPYASVVGSLMYAQVCTRPDIAYITGMLGRYQSNP 441
BLAST of mRNA_H-elongata_contig50357.12269.1 vs. uniprot
Match: A0A445LQ30_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445LQ30_GLYSO) HSP 1 Score: 184 bits (467), Expect = 2.490e-48 Identity = 111/290 (38.28%), Postives = 164/290 (56.55%), Query Frame = 3
Query: 141 VGHEIRFKRKIDKDGGIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRKVLSMIAAFGWEARQLDVDMAYLETDVEEEIYVELPEAYHDSRKQ--VGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADPCVFRRILHGIVVXXXXXXXDDLLVASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITLDRNAGTLKFDQHQYIQTVAEHFCVTKTSI--VPSAAGGKSFSKSDSLQTDAEVEEMRQIPYQEIVGALMWAVTMTRPGISFATHQLAKFNDNP 998
VG++ FK K D G +E+YK RLVA+GF Q GI Y+E+ SP + S R +++++A + E Q+DV A+L D+EE++Y++ P + K+ V LKK++YGL A W KF + + GF+ + D CV+ ++ G V DD+L+A+ + + L S F +KD+GEASY +G I +R+ G L Q YI V E F + K S VP G K FS + + D E ++M IPY +VG++M+A T TRP ISFAT L ++ NP
Sbjct: 938 VGYKWVFKTKRDSHGNLERYKARLVAKGFTQKDGIDYKETFSPVSRKDSFRIIMALVAHYDLELHQMDVKTAFLNGDLEEDVYMDQPMGFSVEGKEHMVCKLKKSIYGLKQASRQWYLKFNDTIVSFGFKENTVDRCVYLKV-SGSKVMFLVLYVDDILLATNDLGLFHETKKFLSSNFEMKDMGEASYVIGIEIFRNRSQGLLGLSQKAYINKVLERFRMEKCSASPVPIQKGDK-FSLAQCPKNDLERKQMEAIPYASVVGSIMYAQTCTRPDISFATGMLGRYQSNP 1225
BLAST of mRNA_H-elongata_contig50357.12269.1 vs. uniprot
Match: A0A151STE9_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151STE9_CAJCA) HSP 1 Score: 178 bits (451), Expect = 5.130e-48 Identity = 108/290 (37.24%), Postives = 161/290 (55.52%), Query Frame = 3
Query: 141 VGHEIRFKRKIDKDGGIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRKVLSMIAAFGWEARQLDVDMAYLETDVEEEIYVELPEAYHDSRKQ--VGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADPCVFRRILHGIVVXXXXXXXDDLLVASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITLDRNAGTLKFDQHQYIQTVAEHFCVTKTSI--VPSAAGGKSFSKSDSLQTDAEVEEMRQIPYQEIVGALMWAVTMTRPGISFATHQLAKFNDNP 998
VG + FK K D DG +E+YK RLVA+GF + GI Y+E+ SP + S R +++++A + E Q+DV A+L ++EE +Y++ P + K+ V LKK++YGL A W KF + + GF+ + D C++ ++ G V DD+L+A+ + + L S F +KD+GEASY +G I DR+ G L Q YI V E F + K S VP G K FS + + D E ++M IPY +VG++M+A TRP ISFA L ++ NP
Sbjct: 228 VGCKWVFKTKRDSDGNLERYKARLVAKGFTKKDGIDYKETFSPVSRKDSFRIIMALVAHYDLELHQMDVKTAFLNGNLEENVYMDQPMGFSVEGKEHMVCKLKKSIYGLKQASRQWYLKFNDTIVSFGFKENIVDRCIYLKV-SGSKVIFLILYVDDILLATNDLGLLHETKKFLSSNFEMKDMGEASYVIGIEIFRDRSQGLLGLSQKAYINKVLERFRMEKCSASPVPIQKGDK-FSLTQCPKNDLERKQMEAIPYASVVGSIMYAQICTRPDISFAAEMLGRYQSNP 515
BLAST of mRNA_H-elongata_contig50357.12269.1 vs. uniprot
Match: A0A5N6PN55_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PN55_9ASTR) HSP 1 Score: 174 bits (440), Expect = 1.710e-47 Identity = 102/285 (35.79%), Postives = 164/285 (57.54%), Query Frame = 3
Query: 159 FKRKIDKDGGIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRKVLSMIAAFGWEARQLDVDMAYLETDVEEEIYVELPEAYHDSRKQ--VGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADPCVFRRILHGIVVXXXXXXXDDLLVASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITLDRNAGTLKFDQHQYIQTVAEHFCVTKTSIVPSAAG---GKSFSKSDSLQTDAEVEEMRQIPYQEIVGALMWAVTMTRPGISFATHQLAKFNDNP 998
+K K+D +G IE+YK RLVA+G+ Q +GI Y+E+ SP + S+R V++++A F E Q+DV A+L D+ E+++++ PE + K+ V L K++ GL A W KF ++ F ++Q D C++ + + G +D+L+AS + R L + F +KDLGEASY +G I +R+ GTL Q YI+ + + F + + S PS A G SF +++AE+++MR IPY +VG+LM+A TRP I++ T L ++ NP
Sbjct: 25 YKTKLDPNGNIERYKARLVAKGYTQREGIDYQETFSPVSRKYSLRIVMALVAHFDLELHQMDVKTAFLNGDLHEDVFMKQPEGFEPKGKEHMVCKLNKSICGLKQASRQWYIKFDEVMKKHNFIKNQVDQCIYLK-MSGSKFVILVLYVNDILLASNNLGMLYDSKRLLSANFDMKDLGEASYVIGIEIHRNRSIGTLGLSQKAYIERILKRFNMQQCS--PSIAPVVKGDSFGSFQCPKSEAEIDQMRLIPYASVVGSLMYAQVCTRPDIAYITGMLGRYQSNP 306
BLAST of mRNA_H-elongata_contig50357.12269.1 vs. uniprot
Match: A0A5N6MC51_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6MC51_9ASTR) HSP 1 Score: 181 bits (459), Expect = 2.320e-47 Identity = 106/291 (36.43%), Postives = 169/291 (58.08%), Query Frame = 3
Query: 141 VGHEIRFKRKIDKDGGIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRKVLSMIAAFGWEARQLDVDMAYLETDVEEEIYVELPEAYHDSRKQ--VGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADPCVFRRILHGIVVXXXXXXXDDLLVASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITLDRNAGTLKFDQHQYIQTVAEHFCVTKTSIVPSAAG---GKSFSKSDSLQTDAEVEEMRQIPYQEIVGALMWAVTMTRPGISFATHQLAKFNDNP 998
VG + +K K+D +G IE+YK RLVA+G+ Q +GI Y+E+ SP + S+R V++++A F E Q+DV A+L D+ E+++++ PE + K+ V L K++YGL A W KF ++ F ++Q D C++ +I G DD+L+AS ++ R L + F +KDLGEASY +G I +R+ GTL Q YI+ + + F + + S PS A G +F +++AE+++MR IPY +VG+LM+A TRP I++ T L ++ NP
Sbjct: 237 VGCKWVYKTKLDPNGNIERYKARLVAKGYTQREGIDYQETFSPVSRKDSLRIVMALVAHFDLELHQMDVKTAFLNGDLHEDVFMKQPEGFEPKGKEHMVCKLNKSIYGLKQASRQWYIKFDEVMKKHNFIKNQVDQCIYLKI-SGSKFVILVLYVDDILLASNNLDMLYESKRLLSANFDMKDLGEASYVIGIEIHRNRSIGTLGLSQKAYIERILKRFNMQQCS--PSVAPVVKGDNFGSYQCPKSEAEIDQMRLIPYASVVGSLMYAQVCTRPDIAYITGMLGRYQSNP 524
BLAST of mRNA_H-elongata_contig50357.12269.1 vs. uniprot
Match: A0A2P6SMQ0_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6SMQ0_ROSCH) HSP 1 Score: 180 bits (456), Expect = 2.610e-47 Identity = 108/290 (37.24%), Postives = 165/290 (56.90%), Query Frame = 3
Query: 141 VGHEIRFKRKIDKDGGIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRKVLSMIAAFGWEARQLDVDMAYLETDVEEEIYVELPEAYHDSRKQ--VGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADPCVFRRILHGIVVXXXXXXXDDLLVASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITLDRNAGTLKFDQHQYIQTVAEHFCVTKTSI--VPSAAGGKSFSKSDSLQTDAEVEEMRQIPYQEIVGALMWAVTMTRPGISFATHQLAKFNDNP 998
+G + FK K D G IE++K RLVA+GF Q +GI++ E+ SP + S R +++++A + E Q+DV A+L ++EEEI++ PE + ++ K+ V LKK++YGL A W KKF + + GF + D CV+ +++ G DD+L+AS+ + + L S F +K+LGEASY LG I DR G L Q YI + + F + + VP + G K +K+ +T+ E EM IPY +VG+LM+A TRP +SFA L++F NP
Sbjct: 292 IGCKWVFKTKRDVSGNIERHKARLVAKGFTQKEGIYFTETFSPVSTKDSFRIIMALVAHYDMELHQMDVKTAFLNGELEEEIFMVQPEGFIEAGKENMVCRLKKSIYGLKQASRQWYKKFDSVVSSFGFTENLVDECVYLKVV-GNNFIFLILYVDDILLASSNVKLLKDTKAFLSSNFDMKELGEASYVLGIEIKRDRKQGLLGLSQQNYISKILKRFGMETCANGEVPMSKGDK-LTKNQCPKTENEKTEMESIPYARLVGSLMYAQVCTRPDLSFAVGMLSRFQSNP 579
BLAST of mRNA_H-elongata_contig50357.12269.1 vs. uniprot
Match: A0A2N9EM55_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EM55_FAGSY) HSP 1 Score: 180 bits (457), Expect = 5.020e-47 Identity = 108/290 (37.24%), Postives = 162/290 (55.86%), Query Frame = 3
Query: 141 VGHEIRFKRKIDKDGGIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRKVLSMIAAFGWEARQLDVDMAYLETDVEEEIYVELPEAY--HDSRKQVGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADPCVFRRILHGIVVXXXXXXXDDLLVASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITLDRNAGTLKFDQHQYIQTVAEHFCVT--KTSIVPSAAGGKSFSKSDSLQTDAEVEEMRQIPYQEIVGALMWAVTMTRPGISFATHQLAKFNDNP 998
+G + FK K D G IE+YK RLVA+GF Q +GI Y E+ SP + S+R +L+++A F E +Q+DV A+L D+EEE+Y++ PE + D + V LKK++YGL A W KF + + GF + D C+++++ G + DD+L+A+ K + + L F +KD+GEASY +G I DR G L Q YI V E F + S+ P G + F+ + + D E E+M+ IPY VG+LM+A TRP I+FA L ++ +P
Sbjct: 730 IGCKWVFKTKKDSLGNIERYKARLVAKGFTQKEGIDYTETFSPVSKKDSLRVILALVAHFDLELQQMDVKTAFLNGDLEEEVYMKQPEGFLSSDGEQLVCKLKKSIYGLKQASRQWYLKFHNVISSFGFVENIMDQCIYQKV-SGSKICFLVLYVDDILLATNDKGLLHEVKQFLSKNFDMKDMGEASYVIGIKIHRDRFQGILGLSQETYINKVLERFRMNDCSPSVAPIVKGDR-FNLNQCPKNDLEREQMKNIPYASAVGSLMYAQVCTRPDIAFAVGMLGRYQSDP 1017 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50357.12269.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig50357.12269.1 >prot_H-elongata_contig50357.12269.1 ID=prot_H-elongata_contig50357.12269.1|Name=mRNA_H-elongata_contig50357.12269.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=144bp MEKSDRARDGWENYSRRVAGDRAPKREDGVGHEIRFKRKIDKDGGIEKYKback to top mRNA from alignment at H-elongata_contig50357:2892..3889+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig50357.12269.1 ID=mRNA_H-elongata_contig50357.12269.1|Name=mRNA_H-elongata_contig50357.12269.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=998bp|location=Sequence derived from alignment at H-elongata_contig50357:2892..3889+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig50357:2892..3889+ >mRNA_H-elongata_contig50357.12269.1 ID=mRNA_H-elongata_contig50357.12269.1|Name=mRNA_H-elongata_contig50357.12269.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=864bp|location=Sequence derived from alignment at H-elongata_contig50357:2892..3889+ (Himanthalia elongata Himel1 dioecious)back to top |