prot_H-elongata_contig50357.12269.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig50357.12269.1
Unique Nameprot_H-elongata_contig50357.12269.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length144
Homology
BLAST of mRNA_H-elongata_contig50357.12269.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK)

HSP 1 Score: 102 bits (254), Expect = 1.650e-22
Identity = 53/114 (46.49%), Postives = 71/114 (62.28%), Query Frame = 0
Query:   30 VGHEIRFKRKIDKDGGIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRKVLSMIAAFGWEARQLDVDMAYLETDVEEEIYVELPEAYHDSRKQVGLLKKAMYGLVHAGLLW 143
            +G +  FK K   DG +EKYK RLVAQGF QV+GI Y E+ +P     SIR +L++ A   WE  Q+DV  A+L  ++EEEIY+++P  +  S   V  LKKA+YGL  A   W
Sbjct: 1039 IGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQASREW 1152          
BLAST of mRNA_H-elongata_contig50357.12269.1 vs. uniprot
Match: A0A151RGT1_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RGT1_CAJCA)

HSP 1 Score: 98.6 bits (244), Expect = 1.870e-22
Identity = 51/122 (41.80%), Postives = 77/122 (63.11%), Query Frame = 0
Query:   24 PKREDGVGHEIRFKRKIDKDGGIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRKVLSMIAAFGWEARQLDVDMAYLETDVEEEIYVELPEAY--HDSRKQVGLLKKAMYGLVHAGLLW 143
            P+ +  +G    F  K   DG IE+YK RLVA+G+ Q  GI Y+E+ +P     ++R VL++ A FGW+  QLDV  A+L  ++EEE+Y+E+P+ +   + R +V LLKKA+YGL  +   W
Sbjct:   29 PRDKKAIGCRWIFTVKHKADGTIERYKARLVAKGYTQTYGIDYKETFAPVAKMNTVRVVLALTAHFGWDLHQLDVKSAFLHGNLEEEVYMEIPQGFKVQNERNKVCLLKKALYGLTQSLRAW 150          
BLAST of mRNA_H-elongata_contig50357.12269.1 vs. uniprot
Match: A0A438E4T4_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=6 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E4T4_VITVI)

HSP 1 Score: 100 bits (250), Expect = 5.570e-22
Identity = 52/121 (42.98%), Postives = 78/121 (64.46%), Query Frame = 0
Query:   24 PKREDGVGHEIRFKRKIDKDGGIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRKVLSMIAAFGWEARQLDVDMAYLETDVEEEIYVELPEAYHDSRK-QVGLLKKAMYGLVHAGLLW 143
            P  +  +G +  +K K + DG IE+YK RLVAQGF Q++GI Y+E  SP     S+R  L+++ A  WE  Q+DV+ A+L  D+EEE+Y++LPE +  + K +V  L+K++YGL  A   W
Sbjct:  588 PPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQEMFSPVAKMTSVRWFLAVVVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQASRQW 708          
BLAST of mRNA_H-elongata_contig50357.12269.1 vs. uniprot
Match: A0A438FT54_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FT54_VITVI)

HSP 1 Score: 100 bits (248), Expect = 8.630e-22
Identity = 53/122 (43.44%), Postives = 75/122 (61.48%), Query Frame = 0
Query:   24 PKREDGVGHEIRFKRKIDKDGGIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRKVLSMIAAFGWEARQLDVDMAYLETDVEEEIYVELPEAY--HDSRKQVGLLKKAMYGLVHAGLLW 143
            PK +  +G +  +K K++KDGG++KYK RLVA+G++Q  G+ Y+E  +P     +IR VLSM A   W   QLDV  A+L  ++EEE+Y++ P  Y       QV  LKKA+YGL  A   W
Sbjct:   63 PKGQKSIGVKWVYKTKLNKDGGVDKYKARLVAKGYKQEFGVDYKEVFAPVAKLDTIRLVLSMAAQNSWSIHQLDVKSAFLHGELEEEVYIDQPPGYVKQGYENQVYKLKKALYGLKQAPRAW 184          
BLAST of mRNA_H-elongata_contig50357.12269.1 vs. uniprot
Match: A0A438GNV2_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GNV2_VITVI)

HSP 1 Score: 100 bits (248), Expect = 9.260e-22
Identity = 52/121 (42.98%), Postives = 78/121 (64.46%), Query Frame = 0
Query:   24 PKREDGVGHEIRFKRKIDKDGGIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRKVLSMIAAFGWEARQLDVDMAYLETDVEEEIYVELPEAYHDSRK-QVGLLKKAMYGLVHAGLLW 143
            P  +  +G +  +K K + DG IE+YK RLVAQGF Q++GI Y+E+ SP     S+R  L++  A  WE  Q+DV+ A+L  D+EEE+Y++LPE +  + K +V  L+K++YGL  A   W
Sbjct:  119 PPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQETFSPVAKMTSVRCFLAIAVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQASRQW 239          
BLAST of mRNA_H-elongata_contig50357.12269.1 vs. uniprot
Match: A5BDW5_VITVI (Reverse transcriptase Ty1/copia-type domain-containing protein n=16 Tax=Vitis vinifera TaxID=29760 RepID=A5BDW5_VITVI)

HSP 1 Score: 94.4 bits (233), Expect = 9.780e-22
Identity = 50/116 (43.10%), Postives = 74/116 (63.79%), Query Frame = 0
Query:   30 VGHEIRFKRKIDKDGGIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRKVLSMIAAFGWEARQLDVDMAYLETDVEEEIYVELPEAY--HDSRKQVGLLKKAMYGLVHAGLLW 143
            +G +  FK K D  G IE+YK RLVA+GF Q +GI Y E+ SP   + S+R +L+++A F  E +Q+DV  A+L  ++EEE+Y++ PE +   D  + V  LKK++YGL  A   W
Sbjct:   26 IGCKWVFKTKKDSLGNIERYKARLVAKGFTQKEGIDYTETFSPVSKKDSLRIILALVAHFDLELQQMDVKTAFLNGELEEEVYMKQPEGFPSSDGEQLVSKLKKSIYGLKQASRQW 141          
BLAST of mRNA_H-elongata_contig50357.12269.1 vs. uniprot
Match: A0A401GXA0_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GXA0_9APHY)

HSP 1 Score: 95.9 bits (237), Expect = 1.180e-21
Identity = 49/120 (40.83%), Postives = 73/120 (60.83%), Query Frame = 0
Query:   24 PKREDGVGHEIRFKRKIDKDGGIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRKVLSMIAAFGWEARQLDVDMAYLETDVEEEIYVELPEAYHDSRKQVGLLKKAMYGLVHAGLLW 143
            PK  + VG +  F++K +K+G + KYK RLVAQG+ Q+ G+ + E+ +P     SIR +L++     WE  Q+DV  AYL  D++EEIY+  PE ++D    V  L K +YGL  +G  W
Sbjct:   10 PKDRNAVGCKWVFQKKTNKEGQVVKYKARLVAQGYSQIPGMDFLETFAPVVHLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFNDGSGHVCRLHKTLYGLKQSGHKW 129          
BLAST of mRNA_H-elongata_contig50357.12269.1 vs. uniprot
Match: A0A438FWZ5_VITVI (Retrovirus-related Pol polyprotein from transposon RE2 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FWZ5_VITVI)

HSP 1 Score: 99.8 bits (247), Expect = 1.360e-21
Identity = 53/122 (43.44%), Postives = 75/122 (61.48%), Query Frame = 0
Query:   24 PKREDGVGHEIRFKRKIDKDGGIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRKVLSMIAAFGWEARQLDVDMAYLETDVEEEIYVELPEAY--HDSRKQVGLLKKAMYGLVHAGLLW 143
            PK +  +G +  +K K++KDGG++KYK RLVA+G++Q  G+ Y+E  +P     +IR VLSM A   W   QLDV  A+L  ++EEE+Y++ P  Y       QV  LKKA+YGL  A   W
Sbjct:  349 PKGQKSIGVKWVYKTKLNKDGGVDKYKARLVAKGYKQEFGVDYKEVFAPVAKLDTIRFVLSMAAQKSWSIHQLDVKSAFLHGELEEEVYIDQPPGYVKQGYENQVYKLKKALYGLKQAPRAW 470          
BLAST of mRNA_H-elongata_contig50357.12269.1 vs. uniprot
Match: A0A5K0WT86_9MAGN (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K0WT86_9MAGN)

HSP 1 Score: 99.4 bits (246), Expect = 1.800e-21
Identity = 53/116 (45.69%), Postives = 75/116 (64.66%), Query Frame = 0
Query:   30 VGHEIRFKRKIDKDGGIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRKVLSMIAAFGWEARQLDVDMAYLETDVEEEIYVELPEAYHDSRKQ--VGLLKKAMYGLVHAGLLW 143
            VG +  +K K D  G IE+YK RLVA+GF Q++GI Y E  SP  A+ S+R VL+++A F  E  Q+DV  A+L  D++EE+Y++ P+ + +S K   V  L KA+YGL HA   W
Sbjct:  174 VGCKWVYKTKRDSKGNIERYKARLVAKGFTQMEGIDYNEIYSPVSAKESMRIVLALVAHFDLELHQMDVKTAFLNGDLDEEVYMDQPQGFSESGKDHLVCKLNKAIYGLQHASRQW 289          
BLAST of mRNA_H-elongata_contig50357.12269.1 vs. uniprot
Match: A5BCC7_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5BCC7_VITVI)

HSP 1 Score: 99.4 bits (246), Expect = 1.960e-21
Identity = 52/121 (42.98%), Postives = 77/121 (63.64%), Query Frame = 0
Query:   24 PKREDGVGHEIRFKRKIDKDGGIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRKVLSMIAAFGWEARQLDVDMAYLETDVEEEIYVELPEAYHDSRK-QVGLLKKAMYGLVHAGLLW 143
            P  +  +G +  +K K + DG IE+YK RLVAQGF Q++GI Y+E  SP     S+R  L++  A  WE  Q+DV+ A+L  D+EEE+Y++LPE +  + K +V  L+K++YGL  A   W
Sbjct:  842 PPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQEXFSPVAKMTSVRCFLAVXVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQASRQW 962          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50357.12269.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0C2WN23_AMAMK1.650e-2246.49Integrase catalytic domain-containing protein (Fra... [more]
A0A151RGT1_CAJCA1.870e-2241.80Retrovirus-related Pol polyprotein from transposon... [more]
A0A438E4T4_VITVI5.570e-2242.98Retrovirus-related Pol polyprotein from transposon... [more]
A0A438FT54_VITVI8.630e-2243.44Retrovirus-related Pol polyprotein from transposon... [more]
A0A438GNV2_VITVI9.260e-2242.98Retrovirus-related Pol polyprotein from transposon... [more]
A5BDW5_VITVI9.780e-2243.10Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A401GXA0_9APHY1.180e-2140.83Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438FWZ5_VITVI1.360e-2143.44Retrovirus-related Pol polyprotein from transposon... [more]
A0A5K0WT86_9MAGN1.800e-2145.69Reverse transcriptase Ty1/copia-type domain-contai... [more]
A5BCC7_VITVI1.960e-2142.98Uncharacterized protein n=1 Tax=Vitis vinifera Tax... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 23..143
e-value: 3.6E-26
score: 92.3
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 31..136
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 31..136

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50357contigH-elongata_contig50357:2945..3376 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50357.12269.1mRNA_H-elongata_contig50357.12269.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig50357 2892..3889 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig50357.12269.1 ID=prot_H-elongata_contig50357.12269.1|Name=mRNA_H-elongata_contig50357.12269.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=144bp
MEKSDRARDGWENYSRRVAGDRAPKREDGVGHEIRFKRKIDKDGGIEKYK
CRLVAQGFRQVKGIHYEESSSPTPAQASIRKVLSMIAAFGWEARQLDVDM
AYLETDVEEEIYVELPEAYHDSRKQVGLLKKAMYGLVHAGLLW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like