mRNA_H-elongata_contig50357.12269.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig50357.12269.1
Unique NamemRNA_H-elongata_contig50357.12269.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig50357.12269.1 vs. uniprot
Match: A0A4V1T029_9SPHI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Sphingobacteriaceae bacterium TaxID=2021370 RepID=A0A4V1T029_9SPHI)

HSP 1 Score: 187 bits (476), Expect = 7.270e-53
Identity = 114/290 (39.31%), Postives = 167/290 (57.59%), Query Frame = 3
Query:  141 VGHEIRFKRKIDKDGGIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRKVLSMIAAFGWEARQLDVDMAYLETDVEEEIYVELPEAYHDSRKQ--VGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADPCVFRRILHGIVVXXXXXXXDDLLVASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITLDRNAGTLKFDQHQYIQTVAEHFCVTKTS--IVPSAAGGKSFSKSDSLQTDAEVEEMRQIPYQEIVGALMWAVTMTRPGISFATHQLAKFNDNP 998
            VG +  FK K+D +G IE++K RLVA+GF Q  G+ Y+E+ SP   + S+R V++M+A +  E  Q+DV  A+L  +++EE++++ PE +    K+  V  LKK++YGL  A   W  KF   + + GF+ +  D C++ +I  G          DD+L+A+       Q    L   F +KD+GEASY +G  I+ DR+ G L   Q  YI  V E F + K S  IVP   G K FS +   + + E ++M QIPY  IVG+LM+A T TRPGISFA   L ++  NP
Sbjct:    8 VGCKWVFKTKLDSNGNIERHKARLVAKGFTQKDGVDYKETFSPVSKKDSLRIVMAMVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFVVDGKEHMVCKLKKSIYGLKQASRQWYLKFNDTVTSFGFKENIVDRCIYLKI-SGSKFIILVLYVDDILLATNDLGLLRQTKEFLSKNFEMKDMGEASYVIGIEISRDRSQGWLGLSQKAYINKVLERFKMDKCSAGIVPIQKGDK-FSLNQCPKNELERKQMEQIPYASIVGSLMYAQTCTRPGISFAVGMLGRYQSNP 295          
BLAST of mRNA_H-elongata_contig50357.12269.1 vs. uniprot
Match: A0A6A3JRZ2_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3JRZ2_9STRA)

HSP 1 Score: 177 bits (450), Expect = 1.320e-49
Identity = 109/289 (37.72%), Postives = 159/289 (55.02%), Query Frame = 3
Query:  141 VGHEIRFKRKIDKDGGIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRKVLSMIAAFGWEARQLDVDMAYLETDVEEEIYVELPEAYHDSRKQVGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADPCVF-RRILHGIVVXXXXXXXDDLLVASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITLDRNAGTLKFDQHQYIQTVAEHFCVTKTSIV--PSAAGGKSFSKSDSLQTDAEVEEMRQIPYQEIVGALMWAVTMTRPGISFATHQLAKFNDNP 998
            +G    F +K D+ G + +YK RLVA+GF+Q  GI + E+ SP     SIR VLS+ AA+ +   QLD D A+L +++++ +Y+E+P    ++R     L KA+YGL  A   W K         GF+   AD CV+ +R  +G +        DD+++A+ T  D  +    L + F +K+LG A + LG  I  D  AGTLK  Q +YI  V + F       V  P AAG K  SK+ S  TDAE   MR  PY+ ++G L++  T TRP I+F   QL++F +NP
Sbjct:   38 IGCRWVFAKKRDQYGRVVRYKARLVAKGFKQKYGIDFFETYSPVANMNSIRVVLSVCAAYEYRMEQLDADTAFLNSELKDRVYMEVPFGIENARDYQYQLNKAIYGLKQAASAWNKTIHRVFLGNGFKSCGADQCVYVKRSKNGFIYVCLYV--DDMIIAAKTSEDIREVKDALKNAFKMKELGPAKFILGMEIDHDMTAGTLKIKQTRYIDDVVKRFGQENAKPVDNPCAAGLK-LSKTQSPGTDAEQNAMRSKPYRSLIGCLLYITTCTRPDIAFMATQLSRFLENP 323          
BLAST of mRNA_H-elongata_contig50357.12269.1 vs. uniprot
Match: A0A2P6S2B9_ROSCH (Putative RNA-directed DNA polymerase n=2 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6S2B9_ROSCH)

HSP 1 Score: 181 bits (460), Expect = 3.570e-49
Identity = 111/290 (38.28%), Postives = 162/290 (55.86%), Query Frame = 3
Query:  141 VGHEIRFKRKIDKDGGIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRKVLSMIAAFGWEARQLDVDMAYLETDVEEEIYVELPEAYHDSRKQ--VGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADPCVFRRILHGIVVXXXXXXXDDLLVASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITLDRNAGTLKFDQHQYIQTVAEHFCVTKTS--IVPSAAGGKSFSKSDSLQTDAEVEEMRQIPYQEIVGALMWAVTMTRPGISFATHQLAKFNDNP 998
            VG +  FK K D +G IE+YK RLVA+GF Q +GI Y+E+ SP   + S+R +++++A F  E  Q+DV  A+L  ++EEE+++  PE +    K+  V  LKK++YGL  A   W  KF   + + GF+ +  D C++ ++  G          DD+L+AS+      +    L   F +KD+GEASY +G  I  DR+ G L   Q  YI+ V E F + K S  I P   G K FS     Q + E + M +IPY   VG+L++A T TRP ISFA   L ++  NP
Sbjct:   61 VGCKWVFKTKRDSNGNIERYKARLVAKGFTQKEGIDYKETFSPVSKKDSLRIIMALVAHFDLELHQMDVKTAFLNGNLEEEVFMNQPEGFSSKGKEHMVCKLKKSIYGLKQASRQWYLKFNDTVVSFGFKENIVDRCIYLKV-SGSKFIFLILYVDDILLASSDLGLLHETKNFLSKKFEMKDMGEASYVIGIEIFRDRSRGLLGLSQKAYIERVLERFGMEKCSPSIAPIQKGDK-FSLKQCPQNELERKGMERIPYASAVGSLVYAQTCTRPDISFAVGMLGRYQSNP 348          
BLAST of mRNA_H-elongata_contig50357.12269.1 vs. uniprot
Match: A0A5N6M1Y8_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6M1Y8_9ASTR)

HSP 1 Score: 181 bits (459), Expect = 1.100e-48
Identity = 106/291 (36.43%), Postives = 169/291 (58.08%), Query Frame = 3
Query:  141 VGHEIRFKRKIDKDGGIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRKVLSMIAAFGWEARQLDVDMAYLETDVEEEIYVELPEAYHDSRKQ--VGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADPCVFRRILHGIVVXXXXXXXDDLLVASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITLDRNAGTLKFDQHQYIQTVAEHFCVTKTSIVPSAAG---GKSFSKSDSLQTDAEVEEMRQIPYQEIVGALMWAVTMTRPGISFATHQLAKFNDNP 998
            VG +  +K K+D +G IE+YK RLVA+G+ Q +GI Y+E+ SP   + S+R V++++A F  E  Q+DV  A+L  D+ E+++++ PE +    K+  V  L K++YGL  A   W  KF   ++   F ++Q D C++ +I  G          DD+L+AS       ++ R L + F +KDLGEASY +G  I  +R+ GTL   Q  YI+ + + F + + S  PS A    G +F      +++AE+++MR IPY  +VG+LM+A   TRP I++ T  L ++  NP
Sbjct:  154 VGCKWVYKTKLDPNGNIERYKARLVAKGYTQREGIDYQETFSPVSRKDSLRIVMALVAHFDLELHQMDVKTAFLNGDLHEDVFMKQPEGFEPKGKEHMVCKLNKSIYGLKQASRQWYIKFDEVMKKHNFIKNQVDQCIYLKI-SGSKFVILVLYVDDILLASNNLDMLYESKRLLSANFDMKDLGEASYVIGIEIHRNRSIGTLGLSQKAYIERILKRFNMQQCS--PSVAPVVKGDNFGSYQCPKSEAEIDQMRLIPYASVVGSLMYAQVCTRPDIAYITGMLGRYQSNP 441          
BLAST of mRNA_H-elongata_contig50357.12269.1 vs. uniprot
Match: A0A445LQ30_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445LQ30_GLYSO)

HSP 1 Score: 184 bits (467), Expect = 2.490e-48
Identity = 111/290 (38.28%), Postives = 164/290 (56.55%), Query Frame = 3
Query:  141 VGHEIRFKRKIDKDGGIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRKVLSMIAAFGWEARQLDVDMAYLETDVEEEIYVELPEAYHDSRKQ--VGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADPCVFRRILHGIVVXXXXXXXDDLLVASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITLDRNAGTLKFDQHQYIQTVAEHFCVTKTSI--VPSAAGGKSFSKSDSLQTDAEVEEMRQIPYQEIVGALMWAVTMTRPGISFATHQLAKFNDNP 998
            VG++  FK K D  G +E+YK RLVA+GF Q  GI Y+E+ SP   + S R +++++A +  E  Q+DV  A+L  D+EE++Y++ P  +    K+  V  LKK++YGL  A   W  KF   + + GF+ +  D CV+ ++  G  V       DD+L+A+       +  + L S F +KD+GEASY +G  I  +R+ G L   Q  YI  V E F + K S   VP   G K FS +   + D E ++M  IPY  +VG++M+A T TRP ISFAT  L ++  NP
Sbjct:  938 VGYKWVFKTKRDSHGNLERYKARLVAKGFTQKDGIDYKETFSPVSRKDSFRIIMALVAHYDLELHQMDVKTAFLNGDLEEDVYMDQPMGFSVEGKEHMVCKLKKSIYGLKQASRQWYLKFNDTIVSFGFKENTVDRCVYLKV-SGSKVMFLVLYVDDILLATNDLGLFHETKKFLSSNFEMKDMGEASYVIGIEIFRNRSQGLLGLSQKAYINKVLERFRMEKCSASPVPIQKGDK-FSLAQCPKNDLERKQMEAIPYASVVGSIMYAQTCTRPDISFATGMLGRYQSNP 1225          
BLAST of mRNA_H-elongata_contig50357.12269.1 vs. uniprot
Match: A0A151STE9_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151STE9_CAJCA)

HSP 1 Score: 178 bits (451), Expect = 5.130e-48
Identity = 108/290 (37.24%), Postives = 161/290 (55.52%), Query Frame = 3
Query:  141 VGHEIRFKRKIDKDGGIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRKVLSMIAAFGWEARQLDVDMAYLETDVEEEIYVELPEAYHDSRKQ--VGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADPCVFRRILHGIVVXXXXXXXDDLLVASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITLDRNAGTLKFDQHQYIQTVAEHFCVTKTSI--VPSAAGGKSFSKSDSLQTDAEVEEMRQIPYQEIVGALMWAVTMTRPGISFATHQLAKFNDNP 998
            VG +  FK K D DG +E+YK RLVA+GF +  GI Y+E+ SP   + S R +++++A +  E  Q+DV  A+L  ++EE +Y++ P  +    K+  V  LKK++YGL  A   W  KF   + + GF+ +  D C++ ++  G  V       DD+L+A+       +  + L S F +KD+GEASY +G  I  DR+ G L   Q  YI  V E F + K S   VP   G K FS +   + D E ++M  IPY  +VG++M+A   TRP ISFA   L ++  NP
Sbjct:  228 VGCKWVFKTKRDSDGNLERYKARLVAKGFTKKDGIDYKETFSPVSRKDSFRIIMALVAHYDLELHQMDVKTAFLNGNLEENVYMDQPMGFSVEGKEHMVCKLKKSIYGLKQASRQWYLKFNDTIVSFGFKENIVDRCIYLKV-SGSKVIFLILYVDDILLATNDLGLLHETKKFLSSNFEMKDMGEASYVIGIEIFRDRSQGLLGLSQKAYINKVLERFRMEKCSASPVPIQKGDK-FSLTQCPKNDLERKQMEAIPYASVVGSIMYAQICTRPDISFAAEMLGRYQSNP 515          
BLAST of mRNA_H-elongata_contig50357.12269.1 vs. uniprot
Match: A0A5N6PN55_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PN55_9ASTR)

HSP 1 Score: 174 bits (440), Expect = 1.710e-47
Identity = 102/285 (35.79%), Postives = 164/285 (57.54%), Query Frame = 3
Query:  159 FKRKIDKDGGIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRKVLSMIAAFGWEARQLDVDMAYLETDVEEEIYVELPEAYHDSRKQ--VGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADPCVFRRILHGIVVXXXXXXXDDLLVASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITLDRNAGTLKFDQHQYIQTVAEHFCVTKTSIVPSAAG---GKSFSKSDSLQTDAEVEEMRQIPYQEIVGALMWAVTMTRPGISFATHQLAKFNDNP 998
            +K K+D +G IE+YK RLVA+G+ Q +GI Y+E+ SP   + S+R V++++A F  E  Q+DV  A+L  D+ E+++++ PE +    K+  V  L K++ GL  A   W  KF   ++   F ++Q D C++ + + G          +D+L+AS        + R L + F +KDLGEASY +G  I  +R+ GTL   Q  YI+ + + F + + S  PS A    G SF      +++AE+++MR IPY  +VG+LM+A   TRP I++ T  L ++  NP
Sbjct:   25 YKTKLDPNGNIERYKARLVAKGYTQREGIDYQETFSPVSRKYSLRIVMALVAHFDLELHQMDVKTAFLNGDLHEDVFMKQPEGFEPKGKEHMVCKLNKSICGLKQASRQWYIKFDEVMKKHNFIKNQVDQCIYLK-MSGSKFVILVLYVNDILLASNNLGMLYDSKRLLSANFDMKDLGEASYVIGIEIHRNRSIGTLGLSQKAYIERILKRFNMQQCS--PSIAPVVKGDSFGSFQCPKSEAEIDQMRLIPYASVVGSLMYAQVCTRPDIAYITGMLGRYQSNP 306          
BLAST of mRNA_H-elongata_contig50357.12269.1 vs. uniprot
Match: A0A5N6MC51_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6MC51_9ASTR)

HSP 1 Score: 181 bits (459), Expect = 2.320e-47
Identity = 106/291 (36.43%), Postives = 169/291 (58.08%), Query Frame = 3
Query:  141 VGHEIRFKRKIDKDGGIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRKVLSMIAAFGWEARQLDVDMAYLETDVEEEIYVELPEAYHDSRKQ--VGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADPCVFRRILHGIVVXXXXXXXDDLLVASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITLDRNAGTLKFDQHQYIQTVAEHFCVTKTSIVPSAAG---GKSFSKSDSLQTDAEVEEMRQIPYQEIVGALMWAVTMTRPGISFATHQLAKFNDNP 998
            VG +  +K K+D +G IE+YK RLVA+G+ Q +GI Y+E+ SP   + S+R V++++A F  E  Q+DV  A+L  D+ E+++++ PE +    K+  V  L K++YGL  A   W  KF   ++   F ++Q D C++ +I  G          DD+L+AS       ++ R L + F +KDLGEASY +G  I  +R+ GTL   Q  YI+ + + F + + S  PS A    G +F      +++AE+++MR IPY  +VG+LM+A   TRP I++ T  L ++  NP
Sbjct:  237 VGCKWVYKTKLDPNGNIERYKARLVAKGYTQREGIDYQETFSPVSRKDSLRIVMALVAHFDLELHQMDVKTAFLNGDLHEDVFMKQPEGFEPKGKEHMVCKLNKSIYGLKQASRQWYIKFDEVMKKHNFIKNQVDQCIYLKI-SGSKFVILVLYVDDILLASNNLDMLYESKRLLSANFDMKDLGEASYVIGIEIHRNRSIGTLGLSQKAYIERILKRFNMQQCS--PSVAPVVKGDNFGSYQCPKSEAEIDQMRLIPYASVVGSLMYAQVCTRPDIAYITGMLGRYQSNP 524          
BLAST of mRNA_H-elongata_contig50357.12269.1 vs. uniprot
Match: A0A2P6SMQ0_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6SMQ0_ROSCH)

HSP 1 Score: 180 bits (456), Expect = 2.610e-47
Identity = 108/290 (37.24%), Postives = 165/290 (56.90%), Query Frame = 3
Query:  141 VGHEIRFKRKIDKDGGIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRKVLSMIAAFGWEARQLDVDMAYLETDVEEEIYVELPEAYHDSRKQ--VGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADPCVFRRILHGIVVXXXXXXXDDLLVASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITLDRNAGTLKFDQHQYIQTVAEHFCVTKTSI--VPSAAGGKSFSKSDSLQTDAEVEEMRQIPYQEIVGALMWAVTMTRPGISFATHQLAKFNDNP 998
            +G +  FK K D  G IE++K RLVA+GF Q +GI++ E+ SP   + S R +++++A +  E  Q+DV  A+L  ++EEEI++  PE + ++ K+  V  LKK++YGL  A   W KKF   + + GF  +  D CV+ +++ G          DD+L+AS+  +  +     L S F +K+LGEASY LG  I  DR  G L   Q  YI  + + F +   +   VP + G K  +K+   +T+ E  EM  IPY  +VG+LM+A   TRP +SFA   L++F  NP
Sbjct:  292 IGCKWVFKTKRDVSGNIERHKARLVAKGFTQKEGIYFTETFSPVSTKDSFRIIMALVAHYDMELHQMDVKTAFLNGELEEEIFMVQPEGFIEAGKENMVCRLKKSIYGLKQASRQWYKKFDSVVSSFGFTENLVDECVYLKVV-GNNFIFLILYVDDILLASSNVKLLKDTKAFLSSNFDMKELGEASYVLGIEIKRDRKQGLLGLSQQNYISKILKRFGMETCANGEVPMSKGDK-LTKNQCPKTENEKTEMESIPYARLVGSLMYAQVCTRPDLSFAVGMLSRFQSNP 579          
BLAST of mRNA_H-elongata_contig50357.12269.1 vs. uniprot
Match: A0A2N9EM55_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EM55_FAGSY)

HSP 1 Score: 180 bits (457), Expect = 5.020e-47
Identity = 108/290 (37.24%), Postives = 162/290 (55.86%), Query Frame = 3
Query:  141 VGHEIRFKRKIDKDGGIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRKVLSMIAAFGWEARQLDVDMAYLETDVEEEIYVELPEAY--HDSRKQVGLLKKAMYGLVHAGLLW*KKFGIELEAKGFQRSQADPCVFRRILHGIVVXXXXXXXDDLLVASATKRDEEQAVRDLCSCFPIKDLGEASYYLGCHITLDRNAGTLKFDQHQYIQTVAEHFCVT--KTSIVPSAAGGKSFSKSDSLQTDAEVEEMRQIPYQEIVGALMWAVTMTRPGISFATHQLAKFNDNP 998
            +G +  FK K D  G IE+YK RLVA+GF Q +GI Y E+ SP   + S+R +L+++A F  E +Q+DV  A+L  D+EEE+Y++ PE +   D  + V  LKK++YGL  A   W  KF   + + GF  +  D C+++++  G  +       DD+L+A+  K    +  + L   F +KD+GEASY +G  I  DR  G L   Q  YI  V E F +     S+ P   G + F+ +   + D E E+M+ IPY   VG+LM+A   TRP I+FA   L ++  +P
Sbjct:  730 IGCKWVFKTKKDSLGNIERYKARLVAKGFTQKEGIDYTETFSPVSKKDSLRVILALVAHFDLELQQMDVKTAFLNGDLEEEVYMKQPEGFLSSDGEQLVCKLKKSIYGLKQASRQWYLKFHNVISSFGFVENIMDQCIYQKV-SGSKICFLVLYVDDILLATNDKGLLHEVKQFLSKNFDMKDMGEASYVIGIKIHRDRFQGILGLSQETYINKVLERFRMNDCSPSVAPIVKGDR-FNLNQCPKNDLEREQMKNIPYASAVGSLMYAQVCTRPDIAFAVGMLGRYQSDP 1017          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50357.12269.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4V1T029_9SPHI7.270e-5339.31Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3JRZ2_9STRA1.320e-4937.72Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2P6S2B9_ROSCH3.570e-4938.28Putative RNA-directed DNA polymerase n=2 Tax=Rosa ... [more]
A0A5N6M1Y8_9ASTR1.100e-4836.43Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A445LQ30_GLYSO2.490e-4838.28Retrovirus-related Pol polyprotein from transposon... [more]
A0A151STE9_CAJCA5.130e-4837.24Retrovirus-related Pol polyprotein from transposon... [more]
A0A5N6PN55_9ASTR1.710e-4735.79Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5N6MC51_9ASTR2.320e-4736.43Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2P6SMQ0_ROSCH2.610e-4737.24Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
A0A2N9EM55_FAGSY5.020e-4737.24Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50357contigH-elongata_contig50357:2892..3889 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score94.0
Seed ortholog evalue6.2e-17
Seed eggNOG ortholog3750.XP_008340360.1
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs389X1@33090,3GNF8@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size998
Cds size432
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50357.12269.1prot_H-elongata_contig50357.12269.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig50357 2945..3376 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930828.1065137-UTR-H-elongata_contig50357:2891..29441622930828.1065137-UTR-H-elongata_contig50357:2891..2944Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig50357 2892..2944 +
1691679587.9222271-UTR-H-elongata_contig50357:2891..29441691679587.9222271-UTR-H-elongata_contig50357:2891..2944Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig50357 2892..2944 +
1622930828.1347373-UTR-H-elongata_contig50357:3376..38891622930828.1347373-UTR-H-elongata_contig50357:3376..3889Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig50357 3377..3889 +
1691679587.9481094-UTR-H-elongata_contig50357:3376..38891691679587.9481094-UTR-H-elongata_contig50357:3376..3889Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig50357 3377..3889 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930828.1194868-CDS-H-elongata_contig50357:2944..33761622930828.1194868-CDS-H-elongata_contig50357:2944..3376Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50357 2945..3376 +
1691679587.9339063-CDS-H-elongata_contig50357:2944..33761691679587.9339063-CDS-H-elongata_contig50357:2944..3376Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50357 2945..3376 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig50357.12269.1

>prot_H-elongata_contig50357.12269.1 ID=prot_H-elongata_contig50357.12269.1|Name=mRNA_H-elongata_contig50357.12269.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=144bp
MEKSDRARDGWENYSRRVAGDRAPKREDGVGHEIRFKRKIDKDGGIEKYK
CRLVAQGFRQVKGIHYEESSSPTPAQASIRKVLSMIAAFGWEARQLDVDM
AYLETDVEEEIYVELPEAYHDSRKQVGLLKKAMYGLVHAGLLW*
back to top

mRNA from alignment at H-elongata_contig50357:2892..3889+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig50357.12269.1 ID=mRNA_H-elongata_contig50357.12269.1|Name=mRNA_H-elongata_contig50357.12269.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=998bp|location=Sequence derived from alignment at H-elongata_contig50357:2892..3889+ (Himanthalia elongata Himel1 dioecious)
GACCCAGAGCCGCCAACCATCGGCGAGGCGCAAGCGTCGTCGGAGTGGCC GCAATGGAAAAGAGCGATCGCGCGCGAGATGGATGGGAAAACTACTCGAG GCGTGTGGCAGGTGATAGAGCGCCCAAAAGGGAAGACGGTGTTGGGCACG AGATTAGGTTTAAGCGCAAAATCGACAAGGATGGAGGGATCGAGAAGTAT AAATGTCGTCTCGTGGCACAGGGTTTCAGGCAGGTTAAAGGCATACACTA CGAGGAATCCTCCTCTCCGACTCCTGCGCAGGCCAGCATTAGGAAGGTAC TCAGCATGATCGCGGCTTTCGGCTGGGAGGCGCGGCAGCTGGACGTCGAC ATGGCCTACCTGGAGACCGATGTGGAGGAGGAGATCTACGTTGAGCTCCC GGAGGCATACCATGATTCCAGGAAGCAAGTCGGCCTACTAAAGAAGGCAA TGTACGGACTCGTCCACGCCGGGCTGCTATGGTAAAAAAAGTTCGGGATC GAGCTCGAGGCGAAGGGTTTCCAAAGATCTCAAGCCGACCCATGCGTGTT CCGGCGGATTCTCCACGGGATAGTGGTAGTCGTCATCGTGGTCTACGTCG ATGACCTGCTGGTTGCTAGTGCGACGAAACGTGACGAGGAGCAAGCGGTG AGGGACCTGTGCTCCTGTTTCCCCATCAAGGATCTGGGGGAGGCTTCGTA TTACCTGGGGTGCCACATCACGCTGGACCGGAACGCTGGGACACTGAAGT TCGACCAGCATCAGTACATACAGACAGTGGCGGAACATTTTTGCGTGACG AAGACCAGCATCGTCCCGTCTGCGGCAGGAGGAAAATCCTTTTCGAAATC AGACAGCCTGCAAACGGACGCAGAGGTTGAAGAAATGCGCCAGATTCCCT ACCAAGAAATCGTTGGGGCCCTAATGTGGGCAGTGACGATGACCAGGCCC GGCATTTCATTCGCTACGCACCAACTAGCAAAATTCAACGACAACCCG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig50357:2892..3889+

>mRNA_H-elongata_contig50357.12269.1 ID=mRNA_H-elongata_contig50357.12269.1|Name=mRNA_H-elongata_contig50357.12269.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=864bp|location=Sequence derived from alignment at H-elongata_contig50357:2892..3889+ (Himanthalia elongata Himel1 dioecious)
ATGGAAAAGAGCGATCGCGCGCGAGATGGATGGGAAAACTACTCGAGGCG
TGTGGCAGGTGATAGAGCGCCCAAAAGGGAAGACGGTGTTGGGCACGAGA
TTAGGTTTAAGCGCAAAATCGACAAGGATGGAGGGATCGAGAAGTATAAA
TGTCGTCTCGTGGCACAGGGTTTCAGGCAGGTTAAAGGCATACACTACGA
GGAATCCTCCTCTCCGACTCCTGCGCAGGCCAGCATTAGGAAGGTACTCA
GCATGATCGCGGCTTTCGGCTGGGAGGCGCGGCAGCTGGACGTCGACATG
GCCTACCTGGAGACCGATGTGGAGGAGGAGATCTACGTTGAGCTCCCGGA
GGCATACCATGATTCCAGGAAGCAAGTCGGCCTACTAAAGAAGGCAATGT
ACGGACTCGTCCACGCCGGGCTGCTATGGTAAATGGAAAAGAGCGATCGC
GCGCGAGATGGATGGGAAAACTACTCGAGGCGTGTGGCAGGTGATAGAGC
GCCCAAAAGGGAAGACGGTGTTGGGCACGAGATTAGGTTTAAGCGCAAAA
TCGACAAGGATGGAGGGATCGAGAAGTATAAATGTCGTCTCGTGGCACAG
GGTTTCAGGCAGGTTAAAGGCATACACTACGAGGAATCCTCCTCTCCGAC
TCCTGCGCAGGCCAGCATTAGGAAGGTACTCAGCATGATCGCGGCTTTCG
GCTGGGAGGCGCGGCAGCTGGACGTCGACATGGCCTACCTGGAGACCGAT
GTGGAGGAGGAGATCTACGTTGAGCTCCCGGAGGCATACCATGATTCCAG
GAAGCAAGTCGGCCTACTAAAGAAGGCAATGTACGGACTCGTCCACGCCG
GGCTGCTATGGTAA
back to top