mRNA_H-elongata_contig20592.5881.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20592.5881.1
Unique NamemRNA_H-elongata_contig20592.5881.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig20592.5881.1 vs. uniprot
Match: D7G7Y2_ECTSI (Major facilitator transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Y2_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 2.380e-25
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 1
Query:    1 ASPDFTNRWAMVAPAFLTHMCIGSPWAWSVMSGTLSRELGVVSSAAADWSV 153
            ASP FTNRWAMVAPAFLTHMCIGSPWAWSVMSGT+SRELG+VSSAA DWS+
Sbjct:   33 ASPSFTNRWAMVAPAFLTHMCIGSPWAWSVMSGTISRELGIVSSAAGDWSM 83          
BLAST of mRNA_H-elongata_contig20592.5881.1 vs. uniprot
Match: A0A835Z4T5_9STRA (Major facilitator transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4T5_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 4.920e-23
Identity = 42/51 (82.35%), Postives = 46/51 (90.20%), Query Frame = 1
Query:    1 ASPDFTNRWAMVAPAFLTHMCIGSPWAWSVMSGTLSRELGVVSSAAADWSV 153
            ASPDFTNRWAMV PAFLTHMCIG+PWAWSVMS TLSRE GV  ++AADWS+
Sbjct:   77 ASPDFTNRWAMVLPAFLTHMCIGTPWAWSVMSSTLSREFGVAGASAADWSI 127          
BLAST of mRNA_H-elongata_contig20592.5881.1 vs. uniprot
Match: A0A0K2U1R3_LEPSM (Uncharacterized protein n=3 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A0K2U1R3_LEPSM)

HSP 1 Score: 82.4 bits (202), Expect = 4.430e-17
Identity = 32/51 (62.75%), Postives = 43/51 (84.31%), Query Frame = 1
Query:    1 ASPDFTNRWAMVAPAFLTHMCIGSPWAWSVMSGTLSRELGVVSSAAADWSV 153
            ASPDF NRW+M  PAF TH+C+GSP+ WS +SGT+++ELG V+ A+ADWS+
Sbjct:   41 ASPDFKNRWSMFVPAFATHVCLGSPYGWSAISGTINKELGFVAPASADWSL 91          
BLAST of mRNA_H-elongata_contig20592.5881.1 vs. uniprot
Match: A0A5A8E8W6_CAFRO (Uncharacterized protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E8W6_CAFRO)

HSP 1 Score: 79.7 bits (195), Expect = 3.940e-16
Identity = 34/44 (77.27%), Postives = 41/44 (93.18%), Query Frame = 1
Query:   22 RWAMVAPAFLTHMCIGSPWAWSVMSGTLSRELGVVSSAAADWSV 153
            RWAM+APAFLTHMCIG P+AWSVMS  L+RELGVV+++AADWS+
Sbjct:  109 RWAMMAPAFLTHMCIGHPYAWSVMSSPLTRELGVVAASAADWSL 152          
BLAST of mRNA_H-elongata_contig20592.5881.1 vs. uniprot
Match: A0A7S1GCY3_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GCY3_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.370e-15
Identity = 31/50 (62.00%), Postives = 38/50 (76.00%), Query Frame = 1
Query:    1 ASPDFTNRWAMVAPAFLTHMCIGSPWAWSVMSGTLSRELGVVSSAAADWS 150
            A   F NRWAMV PAF TH+CIGSPW WSV++G + RE G V++AA DW+
Sbjct:   41 AKKGFKNRWAMVVPAFATHLCIGSPWGWSVLAGPVGREYGFVTAAAEDWT 90          
BLAST of mRNA_H-elongata_contig20592.5881.1 vs. uniprot
Match: A0A7S0STR4_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0STR4_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 2.560e-15
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 1
Query:    1 ASPDFTNRWAMVAPAFLTHMCIGSPWAWSVMSGTLSRELGVVSSAAADWSV 153
            A+ +F +RW M  PAF THMCIGSPWAWS+M+   +RE+G V+ AAADWS+
Sbjct:   59 ATKEFKSRWLMAIPAFGTHMCIGSPWAWSIMADVATREIGFVAPAAADWSL 109          
BLAST of mRNA_H-elongata_contig20592.5881.1 vs. uniprot
Match: A0A7R9YJV2_DIALT (Hypothetical protein (Fragment) n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9YJV2_DIALT)

HSP 1 Score: 72.4 bits (176), Expect = 1.470e-13
Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = 1
Query:    1 ASPDFTNRWAMVAPAFLTHMCIGSP-WAWSVMSGTLSRELGVVSSAAADWSV 153
            ASP FTNRWAM+ PAF TH+C+G P + WSV+S  + RE G V SAA DW++
Sbjct:   11 ASPGFTNRWAMMVPAFTTHLCLGGPGFGWSVLSSAIVREHGFVCSAATDWTL 62          
BLAST of mRNA_H-elongata_contig20592.5881.1 vs. uniprot
Match: A0A8J5XFQ0_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XFQ0_DIALT)

HSP 1 Score: 72.4 bits (176), Expect = 1.480e-13
Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = 1
Query:    1 ASPDFTNRWAMVAPAFLTHMCIGSP-WAWSVMSGTLSRELGVVSSAAADWSV 153
            ASP FTNRWAM+ PAF TH+C+G P + WSV+S  + RE G V SAA DW++
Sbjct:   60 ASPGFTNRWAMMVPAFTTHLCLGGPGFGWSVLSSAIVREHGFVCSAATDWTL 111          
BLAST of mRNA_H-elongata_contig20592.5881.1 vs. uniprot
Match: A0A482RPS1_9ARCH (MFS transporter (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RPS1_9ARCH)

HSP 1 Score: 71.2 bits (173), Expect = 1.780e-13
Identity = 28/51 (54.90%), Postives = 41/51 (80.39%), Query Frame = 1
Query:    1 ASPDFTNRWAMVAPAFLTHMCIGSPWAWSVMSGTLSRELGVVSSAAADWSV 153
            AS +F +RW+M+ PA   H+CIGSP+AWS+M+ T+++E G V SAA+DWS+
Sbjct:   80 ASENFKSRWSMIVPAAAIHLCIGSPYAWSLMADTITKEAGFVLSAASDWSL 130          
BLAST of mRNA_H-elongata_contig20592.5881.1 vs. uniprot
Match: UPI000C782FD4 (uncharacterized protein LOC111700759 n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C782FD4)

HSP 1 Score: 68.2 bits (165), Expect = 4.590e-12
Identity = 28/51 (54.90%), Postives = 39/51 (76.47%), Query Frame = 1
Query:    1 ASPDFTNRWAMVAPAFLTHMCIGSPWAWSVMSGTLSRELGVVSSAAADWSV 153
            A P+ TNRW M  PAF TH+C+G+P+ WS +S  L+RE G+V SAA+DW++
Sbjct:   63 AGPN-TNRWTMFVPAFATHVCLGAPYGWSAISSLLTRENGLVCSAASDWAL 112          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20592.5881.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7Y2_ECTSI2.380e-2590.20Major facilitator transporter n=2 Tax=Ectocarpus T... [more]
A0A835Z4T5_9STRA4.920e-2382.35Major facilitator transporter n=1 Tax=Tribonema mi... [more]
A0A0K2U1R3_LEPSM4.430e-1762.75Uncharacterized protein n=3 Tax=Lepeophtheirus sal... [more]
A0A5A8E8W6_CAFRO3.940e-1677.27Uncharacterized protein n=5 Tax=Cafeteria roenberg... [more]
A0A7S1GCY3_9STRA1.370e-1562.00Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S0STR4_9STRA2.560e-1560.78Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A7R9YJV2_DIALT1.470e-1359.62Hypothetical protein (Fragment) n=1 Tax=Diacronema... [more]
A0A8J5XFQ0_DIALT1.480e-1359.62Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A482RPS1_9ARCH1.780e-1354.90MFS transporter (Fragment) n=1 Tax=archaeon TaxID=... [more]
UPI000C782FD44.590e-1254.90uncharacterized protein LOC111700759 n=1 Tax=Euryt... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20592contigH-elongata_contig20592:6142..6297 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.1
Seed ortholog evalue8.4e-15
Seed eggNOG ortholog2880.D7G7Y2
EggNOG free text desc.Major Facilitator Superfamily
EggNOG OGs2QWN5@2759,COG0477@1
COG Functional cat.EGP
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size156
Cds size126
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930152.6957405-UTR-H-elongata_contig20592:6141..61711622930152.6957405-UTR-H-elongata_contig20592:6141..6171Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20592 6142..6171 +
1691679301.303453-UTR-H-elongata_contig20592:6141..61711691679301.303453-UTR-H-elongata_contig20592:6141..6171Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20592 6142..6171 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930152.7101798-CDS-H-elongata_contig20592:6171..62971622930152.7101798-CDS-H-elongata_contig20592:6171..6297Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20592 6172..6297 +
1691679301.3185356-CDS-H-elongata_contig20592:6171..62971691679301.3185356-CDS-H-elongata_contig20592:6171..6297Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20592 6172..6297 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20592.5881.1prot_H-elongata_contig20592.5881.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20592 6172..6297 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20592.5881.1

>prot_H-elongata_contig20592.5881.1 ID=prot_H-elongata_contig20592.5881.1|Name=mRNA_H-elongata_contig20592.5881.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=42bp
MVAPAFLTHMCIGSPWAWSVMSGTLSRELGVVSSAAADWSV*
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mRNA from alignment at H-elongata_contig20592:6142..6297+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20592.5881.1 ID=mRNA_H-elongata_contig20592.5881.1|Name=mRNA_H-elongata_contig20592.5881.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=156bp|location=Sequence derived from alignment at H-elongata_contig20592:6142..6297+ (Himanthalia elongata Himel1 dioecious)
GCTTCTCCAGATTTCACTAACCGCTGGGCGATGGTAGCCCCTGCCTTCCT GACGCACATGTGCATCGGGTCACCGTGGGCGTGGTCGGTCATGTCTGGCA CCCTGAGCCGGGAGCTGGGCGTCGTATCTAGCGCAGCCGCCGACTGGTCA GTATGA
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Coding sequence (CDS) from alignment at H-elongata_contig20592:6142..6297+

>mRNA_H-elongata_contig20592.5881.1 ID=mRNA_H-elongata_contig20592.5881.1|Name=mRNA_H-elongata_contig20592.5881.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=252bp|location=Sequence derived from alignment at H-elongata_contig20592:6142..6297+ (Himanthalia elongata Himel1 dioecious)
ATGGTAGCCCCTGCCTTCCTGACGCACATGTGCATCGGGTCACCGTGGGC
GTGGTCGGTCATGTCTGGCACCCTGAGCCGGGAGCTGGGCGTCGTATCTA
GCGCAGCCGCCGACTGGTCAGTATGAATGGTAGCCCCTGCCTTCCTGACG
CACATGTGCATCGGGTCACCGTGGGCGTGGTCGGTCATGTCTGGCACCCT
GAGCCGGGAGCTGGGCGTCGTATCTAGCGCAGCCGCCGACTGGTCAGTAT
GA
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