mRNA_H-elongata_contig20592.5881.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig20592.5881.1 vs. uniprot
Match: D7G7Y2_ECTSI (Major facilitator transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Y2_ECTSI) HSP 1 Score: 105 bits (263), Expect = 2.380e-25 Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 1
Query: 1 ASPDFTNRWAMVAPAFLTHMCIGSPWAWSVMSGTLSRELGVVSSAAADWSV 153
ASP FTNRWAMVAPAFLTHMCIGSPWAWSVMSGT+SRELG+VSSAA DWS+
Sbjct: 33 ASPSFTNRWAMVAPAFLTHMCIGSPWAWSVMSGTISRELGIVSSAAGDWSM 83
BLAST of mRNA_H-elongata_contig20592.5881.1 vs. uniprot
Match: A0A835Z4T5_9STRA (Major facilitator transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4T5_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 4.920e-23 Identity = 42/51 (82.35%), Postives = 46/51 (90.20%), Query Frame = 1
Query: 1 ASPDFTNRWAMVAPAFLTHMCIGSPWAWSVMSGTLSRELGVVSSAAADWSV 153
ASPDFTNRWAMV PAFLTHMCIG+PWAWSVMS TLSRE GV ++AADWS+
Sbjct: 77 ASPDFTNRWAMVLPAFLTHMCIGTPWAWSVMSSTLSREFGVAGASAADWSI 127
BLAST of mRNA_H-elongata_contig20592.5881.1 vs. uniprot
Match: A0A0K2U1R3_LEPSM (Uncharacterized protein n=3 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A0K2U1R3_LEPSM) HSP 1 Score: 82.4 bits (202), Expect = 4.430e-17 Identity = 32/51 (62.75%), Postives = 43/51 (84.31%), Query Frame = 1
Query: 1 ASPDFTNRWAMVAPAFLTHMCIGSPWAWSVMSGTLSRELGVVSSAAADWSV 153
ASPDF NRW+M PAF TH+C+GSP+ WS +SGT+++ELG V+ A+ADWS+
Sbjct: 41 ASPDFKNRWSMFVPAFATHVCLGSPYGWSAISGTINKELGFVAPASADWSL 91
BLAST of mRNA_H-elongata_contig20592.5881.1 vs. uniprot
Match: A0A5A8E8W6_CAFRO (Uncharacterized protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E8W6_CAFRO) HSP 1 Score: 79.7 bits (195), Expect = 3.940e-16 Identity = 34/44 (77.27%), Postives = 41/44 (93.18%), Query Frame = 1
Query: 22 RWAMVAPAFLTHMCIGSPWAWSVMSGTLSRELGVVSSAAADWSV 153
RWAM+APAFLTHMCIG P+AWSVMS L+RELGVV+++AADWS+
Sbjct: 109 RWAMMAPAFLTHMCIGHPYAWSVMSSPLTRELGVVAASAADWSL 152
BLAST of mRNA_H-elongata_contig20592.5881.1 vs. uniprot
Match: A0A7S1GCY3_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GCY3_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 1.370e-15 Identity = 31/50 (62.00%), Postives = 38/50 (76.00%), Query Frame = 1
Query: 1 ASPDFTNRWAMVAPAFLTHMCIGSPWAWSVMSGTLSRELGVVSSAAADWS 150
A F NRWAMV PAF TH+CIGSPW WSV++G + RE G V++AA DW+
Sbjct: 41 AKKGFKNRWAMVVPAFATHLCIGSPWGWSVLAGPVGREYGFVTAAAEDWT 90
BLAST of mRNA_H-elongata_contig20592.5881.1 vs. uniprot
Match: A0A7S0STR4_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0STR4_9STRA) HSP 1 Score: 77.4 bits (189), Expect = 2.560e-15 Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 1
Query: 1 ASPDFTNRWAMVAPAFLTHMCIGSPWAWSVMSGTLSRELGVVSSAAADWSV 153
A+ +F +RW M PAF THMCIGSPWAWS+M+ +RE+G V+ AAADWS+
Sbjct: 59 ATKEFKSRWLMAIPAFGTHMCIGSPWAWSIMADVATREIGFVAPAAADWSL 109
BLAST of mRNA_H-elongata_contig20592.5881.1 vs. uniprot
Match: A0A7R9YJV2_DIALT (Hypothetical protein (Fragment) n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9YJV2_DIALT) HSP 1 Score: 72.4 bits (176), Expect = 1.470e-13 Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = 1
Query: 1 ASPDFTNRWAMVAPAFLTHMCIGSP-WAWSVMSGTLSRELGVVSSAAADWSV 153
ASP FTNRWAM+ PAF TH+C+G P + WSV+S + RE G V SAA DW++
Sbjct: 11 ASPGFTNRWAMMVPAFTTHLCLGGPGFGWSVLSSAIVREHGFVCSAATDWTL 62
BLAST of mRNA_H-elongata_contig20592.5881.1 vs. uniprot
Match: A0A8J5XFQ0_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XFQ0_DIALT) HSP 1 Score: 72.4 bits (176), Expect = 1.480e-13 Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = 1
Query: 1 ASPDFTNRWAMVAPAFLTHMCIGSP-WAWSVMSGTLSRELGVVSSAAADWSV 153
ASP FTNRWAM+ PAF TH+C+G P + WSV+S + RE G V SAA DW++
Sbjct: 60 ASPGFTNRWAMMVPAFTTHLCLGGPGFGWSVLSSAIVREHGFVCSAATDWTL 111
BLAST of mRNA_H-elongata_contig20592.5881.1 vs. uniprot
Match: A0A482RPS1_9ARCH (MFS transporter (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RPS1_9ARCH) HSP 1 Score: 71.2 bits (173), Expect = 1.780e-13 Identity = 28/51 (54.90%), Postives = 41/51 (80.39%), Query Frame = 1
Query: 1 ASPDFTNRWAMVAPAFLTHMCIGSPWAWSVMSGTLSRELGVVSSAAADWSV 153
AS +F +RW+M+ PA H+CIGSP+AWS+M+ T+++E G V SAA+DWS+
Sbjct: 80 ASENFKSRWSMIVPAAAIHLCIGSPYAWSLMADTITKEAGFVLSAASDWSL 130
BLAST of mRNA_H-elongata_contig20592.5881.1 vs. uniprot
Match: UPI000C782FD4 (uncharacterized protein LOC111700759 n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C782FD4) HSP 1 Score: 68.2 bits (165), Expect = 4.590e-12 Identity = 28/51 (54.90%), Postives = 39/51 (76.47%), Query Frame = 1
Query: 1 ASPDFTNRWAMVAPAFLTHMCIGSPWAWSVMSGTLSRELGVVSSAAADWSV 153
A P+ TNRW M PAF TH+C+G+P+ WS +S L+RE G+V SAA+DW++
Sbjct: 63 AGPN-TNRWTMFVPAFATHVCLGAPYGWSAISSLLTRENGLVCSAASDWAL 112 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20592.5881.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig20592.5881.1 >prot_H-elongata_contig20592.5881.1 ID=prot_H-elongata_contig20592.5881.1|Name=mRNA_H-elongata_contig20592.5881.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=42bp MVAPAFLTHMCIGSPWAWSVMSGTLSRELGVVSSAAADWSV*back to top mRNA from alignment at H-elongata_contig20592:6142..6297+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig20592.5881.1 ID=mRNA_H-elongata_contig20592.5881.1|Name=mRNA_H-elongata_contig20592.5881.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=156bp|location=Sequence derived from alignment at H-elongata_contig20592:6142..6297+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig20592:6142..6297+ >mRNA_H-elongata_contig20592.5881.1 ID=mRNA_H-elongata_contig20592.5881.1|Name=mRNA_H-elongata_contig20592.5881.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=252bp|location=Sequence derived from alignment at H-elongata_contig20592:6142..6297+ (Himanthalia elongata Himel1 dioecious)back to top |