mRNA_H-elongata_contig2035.5779.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig2035.5779.1
Unique NamemRNA_H-elongata_contig2035.5779.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig2035.5779.1 vs. uniprot
Match: A0A6H5KVU5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU5_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 1.490e-27
Identity = 63/90 (70.00%), Postives = 74/90 (82.22%), Query Frame = 1
Query:    1 ARVLLSVPASAAVLERDFSTAGQLITGSRSRLASENVNMIMFLNGNQESIPVEVPLLSEVQAQEAVPRRLTNPKTEMVALSTDVKYVIPD 270
            ARVLLSVPAS+AVLERDFSTAG+LITG+RSRL++  V M++FLNGNQE IP+EVP LS+ Q QEAVPRRL+NP  E   LS  V  V+PD
Sbjct:  731 ARVLLSVPASSAVLERDFSTAGRLITGARSRLSAAYVEMVLFLNGNQEYIPMEVPKLSKSQGQEAVPRRLSNPNEETERLS--VGEVVPD 818          
BLAST of mRNA_H-elongata_contig2035.5779.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 1.020e-14
Identity = 40/73 (54.79%), Postives = 53/73 (72.60%), Query Frame = 1
Query:    1 ARVLLSVPASAAVLERDFSTAGQLITGSRSRLASENVNMIMFLNGNQESIPVEVPLLSEVQAQEAVPRRLTNP 219
            ARV+   PASAAVLERDFS AG+++T SRS + S+ V MIMFL+GN + IP ++  L+E  A+  +P RL NP
Sbjct:  625 ARVVFGAPASAAVLERDFSNAGRMMTSSRSTMDSKYVEMIMFLHGNLDLIPEDITKLTEAAARTKIPGRLANP 697          
BLAST of mRNA_H-elongata_contig2035.5779.1 vs. uniprot
Match: A0A6H5KCJ3_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ3_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 1.320e-13
Identity = 38/74 (51.35%), Postives = 51/74 (68.92%), Query Frame = 1
Query:    1 ARVLLSVPASAAVLERDFSTAGQLITGSRSRLASEN-VNMIMFLNGNQESIPVEVPLLSEVQAQEAVPRRLTNP 219
            ARV+   PASAAVLERDFS AG+++T SR  + S   V MI+FL+GN + IP ++  L+E  A+  +P RL NP
Sbjct:   13 ARVVFGAPASAAVLERDFSNAGRMMTSSRRTMDSTTYVEMILFLHGNLDLIPEDITKLTEAVARSKIPGRLANP 86          
BLAST of mRNA_H-elongata_contig2035.5779.1 vs. uniprot
Match: D8LBK4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK4_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 6.240e-11
Identity = 36/80 (45.00%), Postives = 52/80 (65.00%), Query Frame = 1
Query:    1 ARVLLSVPASAAVLERDFSTAGQLITGSRSRLASENVNMIMFLNGNQESIPVEVPLLSEVQAQEAVPRRLTNPKTEMVAL 240
            ARV+   PASAAVLERDF+ A  ++  SRS   ++ V M++FL+GN + IP ++P L +   Q  +P RL+NP  E+  L
Sbjct:  565 ARVVFGAPASAAVLERDFTDAWCMMASSRSAGDAKYVEMVLFLHGNLDLIPEQIPELRDEDVQAKIPGRLSNPIPELHGL 644          
BLAST of mRNA_H-elongata_contig2035.5779.1 vs. uniprot
Match: A0A225UGF7_9STRA (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UGF7_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.520e-9
Identity = 37/79 (46.84%), Postives = 51/79 (64.56%), Query Frame = 1
Query:    1 ARVLLSVPASAAVLERDFSTAGQLITGSRSRLASENVNMIMFLNGNQESIPV-EVPLLSEVQAQEAVPRRLTNPKTEMV 234
            ARVL S+P+S+A +ERDF TAG+++T  RS LA  NV+M  FLN N+  + + + P LS   A E   RR +N   +MV
Sbjct:   43 ARVLFSIPSSSAQIERDFGTAGRMVTSQRSSLAPCNVDMTTFLNCNRTYVDITQCPKLSPNTADE---RRPSNVMVQMV 118          
BLAST of mRNA_H-elongata_contig2035.5779.1 vs. uniprot
Match: H3GTQ6_PHYRM (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GTQ6_PHYRM)

HSP 1 Score: 58.9 bits (141), Expect = 4.250e-9
Identity = 32/68 (47.06%), Postives = 47/68 (69.12%), Query Frame = 1
Query:    1 ARVLLSVPASAAVLERDFSTAGQLITGSRSRLASENVNMIMFLNGNQESIPV-EVPLLSEVQAQEAVP 201
            ARV+ S+P+S+A +ERDF TAG+++T  R+ LAS NV+M  FLN N+  + + + P +S   A E VP
Sbjct:   11 ARVVFSLPSSSAQIERDFGTAGRMVTPQRNSLASHNVDMTTFLNCNRCYVNIAQCPKVSAAAASERVP 78          
BLAST of mRNA_H-elongata_contig2035.5779.1 vs. uniprot
Match: A0A6H5L5L6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L6_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 4.620e-9
Identity = 34/72 (47.22%), Postives = 45/72 (62.50%), Query Frame = 1
Query:    1 ARVLLSVPASAAVLERDFSTAGQLITGSRSRLASENVNMIMFLNGNQESIPVEVPLLSEVQAQEAVPRRLTN 216
            ARV+   PASAAVLE DF  AG+++T SRS   ++ V MI+FL+GN + IP ++P         A   RLTN
Sbjct:   55 ARVVFGAPASAAVLEGDFGDAGRIMTSSRSTTDAKYVEMILFLHGNLDLIPEDIPACQPT----APSARLTN 122          
BLAST of mRNA_H-elongata_contig2035.5779.1 vs. uniprot
Match: A0A662XG42_9STRA (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XG42_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 7.500e-8
Identity = 32/68 (47.06%), Postives = 46/68 (67.65%), Query Frame = 1
Query:    1 ARVLLSVPASAAVLERDFSTAGQLITGSRSRLASENVNMIMFLNGNQESIPV-EVPLLSEVQAQEAVP 201
            ARVL S+P+S+A +ERDF TAG+++T  RS LA  NV+M  FL+ N   + + + P LS+  A E +P
Sbjct:  152 ARVLFSMPSSSAQIERDFGTAGRMVTPQRSSLAPYNVDMATFLSCNTSYVDITQCPKLSQSTATERLP 219          
BLAST of mRNA_H-elongata_contig2035.5779.1 vs. uniprot
Match: A0A662XSL6_9STRA (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XSL6_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.370e-7
Identity = 32/68 (47.06%), Postives = 46/68 (67.65%), Query Frame = 1
Query:    1 ARVLLSVPASAAVLERDFSTAGQLITGSRSRLASENVNMIMFLNGNQESIPV-EVPLLSEVQAQEAVP 201
            ARVL S P+S+A +ERDF TAG+++T  RS LA  NV+M  FL+ N+  + + + P LS+  A E +P
Sbjct:  233 ARVLFSKPSSSAQIERDFGTAGRMVTPQRSSLAPYNVDMATFLSCNRSYVDITQCPKLSQSTATERLP 300          
BLAST of mRNA_H-elongata_contig2035.5779.1 vs. uniprot
Match: A0A662WKZ2_9STRA (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WKZ2_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 7.270e-7
Identity = 31/71 (43.66%), Postives = 45/71 (63.38%), Query Frame = 1
Query:    1 ARVLLSVPASAAVLERDFSTAGQLITGSRSRLASENVNMIMFLNGNQESIPV-EVPLLSEVQAQEAVPRRL 210
            ARV+ S+PAS+A +ERDF  AGQ++   RS LA  N++M  FLN N++   + + P LS   A E +P  +
Sbjct:  620 ARVVYSMPASSAQIERDFGMAGQMVVPHRSSLAPYNIDMSTFLNCNRDYCNITQCPKLSAETASERIPSNM 690          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig2035.5779.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A6H5KVU5_9PHAE1.490e-2770.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JZ82_9PHAE1.020e-1454.79Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KCJ3_9PHAE1.320e-1351.35Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
D8LBK4_ECTSI6.240e-1145.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A225UGF7_9STRA2.520e-946.84Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ph... [more]
H3GTQ6_PHYRM4.250e-947.06Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ph... [more]
A0A6H5L5L6_9PHAE4.620e-947.22Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A662XG42_9STRA7.500e-847.06Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
A0A662XSL6_9STRA1.370e-747.06Dimer_Tnp_hAT domain-containing protein n=1 Tax=No... [more]
A0A662WKZ2_9STRA7.270e-743.66Dimer_Tnp_hAT domain-containing protein n=1 Tax=No... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig2035contigH-elongata_contig2035:8942..9220 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.1
Seed ortholog evalue6.4e-07
Seed eggNOG ortholog4792.ETI54656
EggNOG OGs2CZK4@1,2SARG@2759,3QH9R@4776
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size279
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930143.578363-CDS-H-elongata_contig2035:8941..92201622930143.578363-CDS-H-elongata_contig2035:8941..9220Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2035 8942..9220 +
1691679297.7698967-CDS-H-elongata_contig2035:8941..92201691679297.7698967-CDS-H-elongata_contig2035:8941..9220Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2035 8942..9220 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig2035.5779.1prot_H-elongata_contig2035.5779.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig2035 8942..9220 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig2035.5779.1

>prot_H-elongata_contig2035.5779.1 ID=prot_H-elongata_contig2035.5779.1|Name=mRNA_H-elongata_contig2035.5779.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
ARVLLSVPASAAVLERDFSTAGQLITGSRSRLASENVNMIMFLNGNQESI
PVEVPLLSEVQAQEAVPRRLTNPKTEMVALSTDVKYVIPDVFN
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mRNA from alignment at H-elongata_contig2035:8942..9220+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig2035.5779.1 ID=mRNA_H-elongata_contig2035.5779.1|Name=mRNA_H-elongata_contig2035.5779.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=279bp|location=Sequence derived from alignment at H-elongata_contig2035:8942..9220+ (Himanthalia elongata Himel1 dioecious)
GCTCGGGTTCTATTGTCTGTGCCGGCATCTGCTGCTGTTCTCGAGAGGGA CTTCAGCACGGCTGGGCAGCTTATCACCGGGTCCCGTAGCCGGCTGGCGA GTGAAAACGTGAATATGATTATGTTTCTTAACGGCAACCAGGAGTCAATC CCCGTGGAGGTGCCCTTGCTGTCAGAGGTACAGGCTCAGGAGGCAGTGCC TCGCCGGCTCACCAACCCCAAGACAGAGATGGTGGCTCTCTCTACCGACG TCAAATATGTTATCCCCGACGTCTTCAAC
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Coding sequence (CDS) from alignment at H-elongata_contig2035:8942..9220+

>mRNA_H-elongata_contig2035.5779.1 ID=mRNA_H-elongata_contig2035.5779.1|Name=mRNA_H-elongata_contig2035.5779.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig2035:8942..9220+ (Himanthalia elongata Himel1 dioecious)
GCTCGGGTTCTATTGTCTGTGCCGGCATCTGCTGCTGTTCTCGAGAGGGA
CTTCAGCACGGCTGGGCAGCTTATCACCGGGTCCCGTAGCCGGCTGGCGA
GTGAAAACGTGAATATGATTATGTTTCTTAACGGCAACCAGGAGTCAATC
CCCGTGGAGGTGCCCTTGCTGTCAGAGGTACAGGCTCAGGAGGCAGTGCC
TCGCCGGCTCACCAACCCCAAGACAGAGATGGTGGCTCTCTCTACCGACG
TCAAATATGTTATCCCCGACGTCTTCAACGCTCGGGTTCTATTGTCTGTG
CCGGCATCTGCTGCTGTTCTCGAGAGGGACTTCAGCACGGCTGGGCAGCT
TATCACCGGGTCCCGTAGCCGGCTGGCGAGTGAAAACGTGAATATGATTA
TGTTTCTTAACGGCAACCAGGAGTCAATCCCCGTGGAGGTGCCCTTGCTG
TCAGAGGTACAGGCTCAGGAGGCAGTGCCTCGCCGGCTCACCAACCCCAA
GACAGAGATGGTGGCTCTCTCTACCGACGTCAAATATGTTATCCCCGACG
TCTTCAAC
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