mRNA_H-elongata_contig2035.5779.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig2035.5779.1 vs. uniprot
Match: A0A6H5KVU5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU5_9PHAE) HSP 1 Score: 114 bits (285), Expect = 1.490e-27 Identity = 63/90 (70.00%), Postives = 74/90 (82.22%), Query Frame = 1
Query: 1 ARVLLSVPASAAVLERDFSTAGQLITGSRSRLASENVNMIMFLNGNQESIPVEVPLLSEVQAQEAVPRRLTNPKTEMVALSTDVKYVIPD 270
ARVLLSVPAS+AVLERDFSTAG+LITG+RSRL++ V M++FLNGNQE IP+EVP LS+ Q QEAVPRRL+NP E LS V V+PD
Sbjct: 731 ARVLLSVPASSAVLERDFSTAGRLITGARSRLSAAYVEMVLFLNGNQEYIPMEVPKLSKSQGQEAVPRRLSNPNEETERLS--VGEVVPD 818
BLAST of mRNA_H-elongata_contig2035.5779.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE) HSP 1 Score: 77.8 bits (190), Expect = 1.020e-14 Identity = 40/73 (54.79%), Postives = 53/73 (72.60%), Query Frame = 1
Query: 1 ARVLLSVPASAAVLERDFSTAGQLITGSRSRLASENVNMIMFLNGNQESIPVEVPLLSEVQAQEAVPRRLTNP 219
ARV+ PASAAVLERDFS AG+++T SRS + S+ V MIMFL+GN + IP ++ L+E A+ +P RL NP
Sbjct: 625 ARVVFGAPASAAVLERDFSNAGRMMTSSRSTMDSKYVEMIMFLHGNLDLIPEDITKLTEAAARTKIPGRLANP 697
BLAST of mRNA_H-elongata_contig2035.5779.1 vs. uniprot
Match: A0A6H5KCJ3_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ3_9PHAE) HSP 1 Score: 70.1 bits (170), Expect = 1.320e-13 Identity = 38/74 (51.35%), Postives = 51/74 (68.92%), Query Frame = 1
Query: 1 ARVLLSVPASAAVLERDFSTAGQLITGSRSRLASEN-VNMIMFLNGNQESIPVEVPLLSEVQAQEAVPRRLTNP 219
ARV+ PASAAVLERDFS AG+++T SR + S V MI+FL+GN + IP ++ L+E A+ +P RL NP
Sbjct: 13 ARVVFGAPASAAVLERDFSNAGRMMTSSRRTMDSTTYVEMILFLHGNLDLIPEDITKLTEAVARSKIPGRLANP 86
BLAST of mRNA_H-elongata_contig2035.5779.1 vs. uniprot
Match: D8LBK4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK4_ECTSI) HSP 1 Score: 67.0 bits (162), Expect = 6.240e-11 Identity = 36/80 (45.00%), Postives = 52/80 (65.00%), Query Frame = 1
Query: 1 ARVLLSVPASAAVLERDFSTAGQLITGSRSRLASENVNMIMFLNGNQESIPVEVPLLSEVQAQEAVPRRLTNPKTEMVAL 240
ARV+ PASAAVLERDF+ A ++ SRS ++ V M++FL+GN + IP ++P L + Q +P RL+NP E+ L
Sbjct: 565 ARVVFGAPASAAVLERDFTDAWCMMASSRSAGDAKYVEMVLFLHGNLDLIPEQIPELRDEDVQAKIPGRLSNPIPELHGL 644
BLAST of mRNA_H-elongata_contig2035.5779.1 vs. uniprot
Match: A0A225UGF7_9STRA (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UGF7_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 2.520e-9 Identity = 37/79 (46.84%), Postives = 51/79 (64.56%), Query Frame = 1
Query: 1 ARVLLSVPASAAVLERDFSTAGQLITGSRSRLASENVNMIMFLNGNQESIPV-EVPLLSEVQAQEAVPRRLTNPKTEMV 234
ARVL S+P+S+A +ERDF TAG+++T RS LA NV+M FLN N+ + + + P LS A E RR +N +MV
Sbjct: 43 ARVLFSIPSSSAQIERDFGTAGRMVTSQRSSLAPCNVDMTTFLNCNRTYVDITQCPKLSPNTADE---RRPSNVMVQMV 118
BLAST of mRNA_H-elongata_contig2035.5779.1 vs. uniprot
Match: H3GTQ6_PHYRM (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GTQ6_PHYRM) HSP 1 Score: 58.9 bits (141), Expect = 4.250e-9 Identity = 32/68 (47.06%), Postives = 47/68 (69.12%), Query Frame = 1
Query: 1 ARVLLSVPASAAVLERDFSTAGQLITGSRSRLASENVNMIMFLNGNQESIPV-EVPLLSEVQAQEAVP 201
ARV+ S+P+S+A +ERDF TAG+++T R+ LAS NV+M FLN N+ + + + P +S A E VP
Sbjct: 11 ARVVFSLPSSSAQIERDFGTAGRMVTPQRNSLASHNVDMTTFLNCNRCYVNIAQCPKVSAAAASERVP 78
BLAST of mRNA_H-elongata_contig2035.5779.1 vs. uniprot
Match: A0A6H5L5L6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L6_9PHAE) HSP 1 Score: 58.9 bits (141), Expect = 4.620e-9 Identity = 34/72 (47.22%), Postives = 45/72 (62.50%), Query Frame = 1
Query: 1 ARVLLSVPASAAVLERDFSTAGQLITGSRSRLASENVNMIMFLNGNQESIPVEVPLLSEVQAQEAVPRRLTN 216
ARV+ PASAAVLE DF AG+++T SRS ++ V MI+FL+GN + IP ++P A RLTN
Sbjct: 55 ARVVFGAPASAAVLEGDFGDAGRIMTSSRSTTDAKYVEMILFLHGNLDLIPEDIPACQPT----APSARLTN 122
BLAST of mRNA_H-elongata_contig2035.5779.1 vs. uniprot
Match: A0A662XG42_9STRA (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XG42_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 7.500e-8 Identity = 32/68 (47.06%), Postives = 46/68 (67.65%), Query Frame = 1
Query: 1 ARVLLSVPASAAVLERDFSTAGQLITGSRSRLASENVNMIMFLNGNQESIPV-EVPLLSEVQAQEAVP 201
ARVL S+P+S+A +ERDF TAG+++T RS LA NV+M FL+ N + + + P LS+ A E +P
Sbjct: 152 ARVLFSMPSSSAQIERDFGTAGRMVTPQRSSLAPYNVDMATFLSCNTSYVDITQCPKLSQSTATERLP 219
BLAST of mRNA_H-elongata_contig2035.5779.1 vs. uniprot
Match: A0A662XSL6_9STRA (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XSL6_9STRA) HSP 1 Score: 57.4 bits (137), Expect = 1.370e-7 Identity = 32/68 (47.06%), Postives = 46/68 (67.65%), Query Frame = 1
Query: 1 ARVLLSVPASAAVLERDFSTAGQLITGSRSRLASENVNMIMFLNGNQESIPV-EVPLLSEVQAQEAVP 201
ARVL S P+S+A +ERDF TAG+++T RS LA NV+M FL+ N+ + + + P LS+ A E +P
Sbjct: 233 ARVLFSKPSSSAQIERDFGTAGRMVTPQRSSLAPYNVDMATFLSCNRSYVDITQCPKLSQSTATERLP 300
BLAST of mRNA_H-elongata_contig2035.5779.1 vs. uniprot
Match: A0A662WKZ2_9STRA (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WKZ2_9STRA) HSP 1 Score: 55.5 bits (132), Expect = 7.270e-7 Identity = 31/71 (43.66%), Postives = 45/71 (63.38%), Query Frame = 1
Query: 1 ARVLLSVPASAAVLERDFSTAGQLITGSRSRLASENVNMIMFLNGNQESIPV-EVPLLSEVQAQEAVPRRL 210
ARV+ S+PAS+A +ERDF AGQ++ RS LA N++M FLN N++ + + P LS A E +P +
Sbjct: 620 ARVVYSMPASSAQIERDFGMAGQMVVPHRSSLAPYNIDMSTFLNCNRDYCNITQCPKLSAETASERIPSNM 690 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig2035.5779.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 23
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig2035.5779.1 >prot_H-elongata_contig2035.5779.1 ID=prot_H-elongata_contig2035.5779.1|Name=mRNA_H-elongata_contig2035.5779.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp ARVLLSVPASAAVLERDFSTAGQLITGSRSRLASENVNMIMFLNGNQESIback to top mRNA from alignment at H-elongata_contig2035:8942..9220+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig2035.5779.1 ID=mRNA_H-elongata_contig2035.5779.1|Name=mRNA_H-elongata_contig2035.5779.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=279bp|location=Sequence derived from alignment at H-elongata_contig2035:8942..9220+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig2035:8942..9220+ >mRNA_H-elongata_contig2035.5779.1 ID=mRNA_H-elongata_contig2035.5779.1|Name=mRNA_H-elongata_contig2035.5779.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig2035:8942..9220+ (Himanthalia elongata Himel1 dioecious)back to top |