mRNA_H-elongata_contig198293.5552.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig198293.5552.1 vs. uniprot
Match: A0A5R9QKQ6_9BACT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Labilibacter sediminis TaxID=2570926 RepID=A0A5R9QKQ6_9BACT) HSP 1 Score: 92.4 bits (228), Expect = 4.270e-19 Identity = 51/122 (41.80%), Postives = 70/122 (57.38%), Query Frame = 1
Query: 4 TMDEAQASSEWPQWKRAIASEMAKQTGRGVWQVVECPKGKTVLGTRVVFKRKIDKDGKIENYKCCLVGQGFRQVKGIHYEESSFPTPAQTSIRMVLSIIAALGWEARQLDVDMTYGEKPLQQ 369
T EA SSE PQWK AI SE+ W++V+ P G LG R +FKRK+ DG I+ YK LV +G+RQ +G+ Y ++ P TSIRMVL+I A + Q+DV + L++
Sbjct: 32 TYQEAVNSSEGPQWKEAIKSEIESILQNHTWELVDLPPGSKPLGYRWIFKRKMKADGSIDKYKARLVVKGYRQKEGLDYFDTYSPVTRITSIRMVLAIAAIRNLQIHQMDVKTAFLNGELEE 153
BLAST of mRNA_H-elongata_contig198293.5552.1 vs. uniprot
Match: A0A177T913_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Tilletia indica TaxID=43049 RepID=A0A177T913_9BASI) HSP 1 Score: 93.2 bits (230), Expect = 6.640e-19 Identity = 50/142 (35.21%), Postives = 76/142 (53.52%), Query Frame = 1
Query: 4 TMDEAQASSEWPQWKRAIASEMAKQTGRGVWQVVECPKGKTVLGTRVVFKRKIDKDGKIENYKCCLVGQGFRQVKGIHYEESSFPTPAQTSIRMVLSIIAALGWEARQLDVDMTYG----EKPL---QQSTNEACGHQALHC 408
T+ +A ++W W +A+ EM + G W + E P+ + ++G+R VFK K+D +G + YK LV QGF Q+ G+ Y E+ P +IR +L++ A LGW QLDV Y +KP+ Q E G + L C
Sbjct: 664 TLKDAMRRTDWALWLQAMREEMESHSEMGTWVLEEVPEDRELVGSRWVFKLKLDSEGNVARYKARLVAQGFSQIPGVDYNETYSPVTRFVTIRTLLALAAFLGWHVHQLDVITAYLYGLLDKPVFMRQPPGFEVAGKEHLAC 805
BLAST of mRNA_H-elongata_contig198293.5552.1 vs. uniprot
Match: A0A177U1E5_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177U1E5_9BASI) HSP 1 Score: 93.2 bits (230), Expect = 6.670e-19 Identity = 44/122 (36.07%), Postives = 71/122 (58.20%), Query Frame = 1
Query: 4 TMDEAQASSEWPQWKRAIASEMAKQTGRGVWQVVECPKGKTVLGTRVVFKRKIDKDGKIENYKCCLVGQGFRQVKGIHYEESSFPTPAQTSIRMVLSIIAALGWEARQLDVDMTYGEKPLQQ 369
T EA+ S+W +W +A+ +M G W +V+ P G+ +G+R V+K K+D++GK + +K LV QGF QV G+ Y E+ P S+R++L++ A GW Q+DV Y L++
Sbjct: 734 TYAEARRRSDWEKWNKAMDEQMDALVGMHTWDLVQLPPGRKAIGSRWVYKLKLDEEGKADRWKARLVAQGFTQVAGVDYFETFAPVARLDSLRVILALAAHFGWVIHQVDVVTAYLNGDLEE 855
BLAST of mRNA_H-elongata_contig198293.5552.1 vs. uniprot
Match: D1MBJ6_AGABI (Polyprotein n=1 Tax=Agaricus bisporus var. bisporus TaxID=192523 RepID=D1MBJ6_AGABI) HSP 1 Score: 93.2 bits (230), Expect = 6.740e-19 Identity = 46/115 (40.00%), Postives = 66/115 (57.39%), Query Frame = 1
Query: 4 TMDEAQASSEWPQWKRAIASEMAKQTGRGVWQVVECPKGKTVLGTRVVFKRKIDKDGKIENYKCCLVGQGFRQVKGIHYEESSFPTPAQTSIRMVLSIIAALGWEARQLDVDMTY 348
T EA ++WP WK+A+ E+A G W++V+CP G ++G++ VFK K D G I YK LV QG+ Q+ G+ Y ++ P +SIR VL+I A E Q+DV Y
Sbjct: 883 TWKEATQRTDWPLWKKAMEEELATLQAAGTWELVDCPLGINIVGSKWVFKAKKDAAGNIVRYKARLVAQGYSQIPGVDYFDTFAPVARLSSIRTVLAIATARNLEIHQIDVKGAY 997
BLAST of mRNA_H-elongata_contig198293.5552.1 vs. uniprot
Match: A0A177VQ04_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177VQ04_9BASI) HSP 1 Score: 92.4 bits (228), Expect = 1.220e-18 Identity = 43/115 (37.39%), Postives = 66/115 (57.39%), Query Frame = 1
Query: 4 TMDEAQASSEWPQWKRAIASEMAKQTGRGVWQVVECPKGKTVLGTRVVFKRKIDKDGKIENYKCCLVGQGFRQVKGIHYEESSFPTPAQTSIRMVLSIIAALGWEARQLDVDMTY 348
T+ +A S+W QW +A+ EM + G W + + P + ++G+R VFK K+D +G + YK LV QGF Q+ G+ Y E+ P +IR +L++ A GW+ QLDV Y
Sbjct: 612 TLKDAMRRSDWAQWLQAMREEMESHSEMGTWVLEKVPDDRELVGSRWVFKLKLDSEGAVSRYKARLVAQGFSQIFGVDYNETYSPVTRFVTIRTLLALAAYFGWQIHQLDVVTAY 726
BLAST of mRNA_H-elongata_contig198293.5552.1 vs. uniprot
Match: A0A177VM49_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177VM49_9BASI) HSP 1 Score: 92.0 bits (227), Expect = 1.670e-18 Identity = 45/115 (39.13%), Postives = 65/115 (56.52%), Query Frame = 1
Query: 4 TMDEAQASSEWPQWKRAIASEMAKQTGRGVWQVVECPKGKTVLGTRVVFKRKIDKDGKIENYKCCLVGQGFRQVKGIHYEESSFPTPAQTSIRMVLSIIAALGWEARQLDVDMTY 348
T+ +A ++W W A+ E+A T G W + E P + ++G+R VFK K+D DG + YK LV QGF QV G+ + E+ P +IR +L++ A LGW QLDV Y
Sbjct: 637 TLKDAMRRTDWGLWLEAMKEEIASHTEMGTWVLEELPADRDLVGSRWVFKLKLDTDGCVARYKARLVAQGFSQVPGVDFHETYSPVTRFVTIRTLLALAAYLGWHVHQLDVVTAY 751
BLAST of mRNA_H-elongata_contig198293.5552.1 vs. uniprot
Match: A0A177U0B1_9BASI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Tilletia caries TaxID=13290 RepID=A0A177U0B1_9BASI) HSP 1 Score: 91.3 bits (225), Expect = 2.660e-18 Identity = 43/108 (39.81%), Postives = 65/108 (60.19%), Query Frame = 1
Query: 25 SSEWPQWKRAIASEMAKQTGRGVWQVVECPKGKTVLGTRVVFKRKIDKDGKIENYKCCLVGQGFRQVKGIHYEESSFPTPAQTSIRMVLSIIAALGWEARQLDVDMTY 348
S+EW QWK+A+ E+A T G W +VE G ++G+R V+K K+D+DG YK LV QGF Q +GI ++E+ P ++R+V+S+ ALG +D+ Y
Sbjct: 34 SAEWAQWKQAMDEEVASLTEMGTWVLVEPRSGHNIVGSRWVYKLKLDRDGNAARYKARLVAQGFTQREGIDFKETFAPVARLVTVRLVISVALALGLHLGSIDIKTAY 141
BLAST of mRNA_H-elongata_contig198293.5552.1 vs. uniprot
Match: A0A177VSQ5_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Tilletia controversa TaxID=13291 RepID=A0A177VSQ5_9BASI) HSP 1 Score: 91.3 bits (225), Expect = 3.120e-18 Identity = 43/108 (39.81%), Postives = 65/108 (60.19%), Query Frame = 1
Query: 25 SSEWPQWKRAIASEMAKQTGRGVWQVVECPKGKTVLGTRVVFKRKIDKDGKIENYKCCLVGQGFRQVKGIHYEESSFPTPAQTSIRMVLSIIAALGWEARQLDVDMTY 348
S+EW QWK+A+ E+A T G W +VE G ++G+R V+K K+D+DG YK LV QGF Q +GI ++E+ P ++R+V+S+ ALG +D+ Y
Sbjct: 703 SAEWAQWKQAMDEEVASLTEMGTWVLVEPRSGHNIVGSRWVYKLKLDRDGNAARYKARLVAQGFTQREGIDFKETFAPVARLVTVRLVISVALALGLHLGSIDIKTAY 810
BLAST of mRNA_H-elongata_contig198293.5552.1 vs. uniprot
Match: A0A2U1QLY4_ARTAN (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1QLY4_ARTAN) HSP 1 Score: 90.9 bits (224), Expect = 3.820e-18 Identity = 50/123 (40.65%), Postives = 71/123 (57.72%), Query Frame = 1
Query: 1 TTMDEAQASSEWPQWKRAIASEMAKQTGRGVWQVVECPKGKTVLGTRVVFKRKIDKDGKIENYKCCLVGQGFRQVKGIHYEESSFPTPAQTSIRMVLSIIAALGWEARQLDVDMTYGEKPLQQ 369
T+ EA SSE PQWK AI SE+ W++V+ P G LG + +FK+K+ DG I+ YK LV +GFRQ +G+ Y ++ P TSIRM+L+I A E Q+DV + L++
Sbjct: 101 TSYREAVTSSEGPQWKEAIKSEIDSILQNHTWELVDLPPGCKPLGYKWIFKKKMKADGTIDKYKARLVIKGFRQREGLDYFDTYLPVTRITSIRMILAIAALRNLEVHQMDVKTAFLNGDLEE 223
BLAST of mRNA_H-elongata_contig198293.5552.1 vs. uniprot
Match: A0A177U095_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177U095_9BASI) HSP 1 Score: 90.9 bits (224), Expect = 4.210e-18 Identity = 50/142 (35.21%), Postives = 76/142 (53.52%), Query Frame = 1
Query: 4 TMDEAQASSEWPQWKRAIASEMAKQTGRGVWQVVECPKGKTVLGTRVVFKRKIDKDGKIENYKCCLVGQGFRQVKGIHYEESSFPTPAQTSIRMVLSIIAALGWEARQLDVDMTYG----EKPL---QQSTNEACGHQALHC 408
T+ +A +W +W A+ E+ G W++ E P+G+ V+G+R VFK K+D G + YK LV QGF Q+ G+ Y+E+ P SIR +L++ A W QLDV Y ++P+ Q + EA G + L C
Sbjct: 609 TLKDAMRRPDWAKWLEAMREEIDSHMEMGTWELAELPEGRDVVGSRWVFKLKLDSAGNVARYKGRLVAQGFSQIPGVDYDETYSPVTRFISIRTLLALAAYFHWHVHQLDVVTAYLYGLLDRPIYMRQPALFEAQGAEHLVC 750 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig198293.5552.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig198293.5552.1 >prot_H-elongata_contig198293.5552.1 ID=prot_H-elongata_contig198293.5552.1|Name=mRNA_H-elongata_contig198293.5552.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=168bp MDEAQASSEWPQWKRAIASEMAKQTGRGVWQVVECPKGKTVLGTRVVFKRback to top mRNA from alignment at H-elongata_contig198293:266..775+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig198293.5552.1 ID=mRNA_H-elongata_contig198293.5552.1|Name=mRNA_H-elongata_contig198293.5552.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=510bp|location=Sequence derived from alignment at H-elongata_contig198293:266..775+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig198293:266..775+ >mRNA_H-elongata_contig198293.5552.1 ID=mRNA_H-elongata_contig198293.5552.1|Name=mRNA_H-elongata_contig198293.5552.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1008bp|location=Sequence derived from alignment at H-elongata_contig198293:266..775+ (Himanthalia elongata Himel1 dioecious)back to top |